Rroxscaffold_2G00117170

DTW

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0007999
Physical Location & Seq
Reverse (-)
44684308 .. 44688679
4372 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00117170.1

Sequence Viewer

Length: 1203 bp
ATGGCCTCCCCCTCAAGGGCCATCGCATTCAAATGTTCTCCCTCTCTGGCATTTTCTTCGAAAACGCGGATGGACTCGAAACCCAGAACCCTTCAAAACCCATTTTCTAGTTCAACTTCAGGCGCTGCTTCAAGAGAAGCTCGTACAGGCGACACTGCTGAAGCCTCTATCACATTGCAGGAATGGCAGGGTTGGGGCACCAGCTCCCCCATCCCCGCCATGGTCACCAAAATTGTTCAGGATTTGAAGGTTTTGGAGAAAGATATTGATGCCCAAATGAGCTTTGGTGGCAGTGGTGGCAAGCTTCAGTGTAAAGTTCAGATGTGTAATGCTTTATCTATCGCTGAGGGAGATTTTAAAGTGCAAGAGGATAGAAAACACAGGAAGACATATAAGGCTTTAGGTGACTCTGAACAAAAGATTCAGTTTTTTTCAGCTAGACAAATAGCATGCCGCTTGCTTGGAAGTAGAGGCTACCTTTGTCAAAAGTGCTGGCTTCCTTTGGAAGATTGTATGTGTTCAAGAGTGGTACAGTGCCCTCTTTGGCCTCGAATGCGATTCTGGTTGTATATGCATCCAAAGGATTTCTTAAGACAGAACAATACTGGAAAGTTGTTATGGCAAGTATTTGGCACTGAAGCTGCAACTTTGTGCCTCTTCGGCATAGCTGAACAGGAAGAAATAATGTGGGATGCATTTAAGCTAGCAGGAAAAAGCAATGTTTGGTGCCTCTATCCCAACAAAAATGCTGTGTTAACTTCTGTTCAGGATGTCTTTGGCCAAGAATCTTCAGCTGATCTGGAAGGTCCATATACCAAGATAAATGAAGATAGAACTCTGAATTTCATTTTGATTGATGGAACATGGAACAATTCTGTTGCGATATTCCGTCGCCTGAAGGATCAAGCAAAGTTAGTATGGGGAGGAGAGGATTTTCCTTGTATTTCCCTGGCCACTGGTGCTTCTGCAATGCATAAACTTCGGCCCCAACCATCATTGGATCGTACCTGTACAGCAGCAGCAGCTATTGGCCTCCTCTCCGAGCTGCACGCTCTTCCAGAGTTCAGGTCCCATGGATTTGATAAGCAGGCTGAAGTTGTAGAGGATGCTTTAGTTGTACTATTAGAGGCTCTAACAAATAGACGACTTCGGATGGGCAGGTCCATCAGTCGTAAAGTAAGACATACGAGTGATTTTGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DTW

Protein Analysis

400

Amino Acids

44.65

Weight (kDa)

8.9

Isoelectric Point (pI)

46.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DTW PF03942 159 - 382 6.1e-39 DTW domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1149
AccB1I GGYRCC 2 cut(s) 197, 726
AccII CGCG 1 cut(s) 67
AciI CCGC 3 cut(s) 67, 216, 454
AclWI GGATC 2 cut(s) 909, 1008
AcoI YGGCCR 2 cut(s) 778, 951
AcsI RAATTY 1 cut(s) 841
AcuI CTGAAG 7 cut(s) 102, 180, 290, 657, 774, 917, 1113
AfaI GTAC 5 cut(s) 145, 531, 1006, 1012, 1119
AfiI CCNNNNNNNGG 3 cut(s) 15, 16, 220
AflII CTTAAG 1 cut(s) 589
AgsI TTSAA 6 cut(s) 31, 95, 114, 132, 247, 522
AjnI CCWGG 1 cut(s) 948
AlwI GGATC 2 cut(s) 909, 1008
AlwNI CAGNNNCTG 1 cut(s) 125
AoxI GGCC 7 cut(s) 3, 18, 545, 778, 951, 983, 1030
ApeKI GCWGC 6 cut(s) 125, 641, 1016, 1019, 1022, 1045
ApoI RAATTY 1 cut(s) 841
AspLEI GCGC 1 cut(s) 125
AspS9I GGNCC 5 cut(s) 18, 806, 984, 1068, 1161
AsuHPI GGTGA 2 cut(s) 217, 416
AsuII TTCGAA 1 cut(s) 59
AsuNHI GCTAGC 1 cut(s) 703
AvaII GGWCC 3 cut(s) 806, 1068, 1161
BaeGI GKGCMC 2 cut(s) 200, 539
BalI TGGCCA 2 cut(s) 780, 953
BanI GGYRCC 2 cut(s) 197, 726
BbsI GAAGAC 1 cut(s) 392
BbvCI CCTCAGC 1 cut(s) 345
BbvI GCAGC 6 cut(s) 112, 628, 1028, 1031, 1032, 1034
BccI CCATC 7 cut(s) 29, 64, 218, 851, 1000, 1147, 1172
BcgI CGANNNNNNTGC 4 cut(s) 39, 73, 962, 996
BciT130I CCWGG 1 cut(s) 950
BfaI CTAG 3 cut(s) 108, 438, 704
BfoI RGCGCY 1 cut(s) 126
BfrI CTTAAG 1 cut(s) 589
BfuAI ACCTGC 1 cut(s) 1149
BglI GCCNNNNNGGC 1 cut(s) 660
BisI GCNGC 7 cut(s) 126, 454, 642, 1017, 1020, 1023, 1046
BlsI GCNGC 7 cut(s) 127, 455, 643, 1018, 1021, 1024, 1047
Bme1390I CCNGG 1 cut(s) 950
Bme18I GGWCC 3 cut(s) 806, 1068, 1161
BmgT120I GGNCC 5 cut(s) 18, 806, 984, 1068, 1161
BmiI GGNNCC 4 cut(s) 199, 728, 986, 1070
BmrFI CCNGG 1 cut(s) 950
BmsI GCATC 4 cut(s) 259, 583, 682, 1096
BmtI GCTAGC 1 cut(s) 707
BpiI GAAGAC 1 cut(s) 392
Bpu10I CCTNAGC 1 cut(s) 345
Bpu14I TTCGAA 1 cut(s) 59
BsaJI CCNNGG 3 cut(s) 219, 948, 1072
Bsc4I CCNNNNNNNGG 3 cut(s) 15, 16, 220
Bse1I ACTGG 2 cut(s) 610, 961
Bse3DI GCAATG 3 cut(s) 173, 724, 975
BseBI CCWGG 1 cut(s) 950
BseDI CCNNGG 3 cut(s) 219, 948, 1072
BseGI GGATG 7 cut(s) 75, 210, 574, 697, 775, 1111, 1158
BseLI CCNNNNNNNGG 3 cut(s) 15, 16, 220
BseMI GCAATG 3 cut(s) 173, 724, 975
BseMII CTCAG 1 cut(s) 336
BseNI ACTGG 2 cut(s) 610, 961
BseRI GAGGAG 2 cut(s) 939, 1025
BseSI GKGCMC 2 cut(s) 200, 539
BseXI GCAGC 6 cut(s) 112, 628, 1028, 1031, 1032, 1034
BsgI GTGCAG 1 cut(s) 1031
Bsh1236I CGCG 1 cut(s) 67
BshFI GGCC 7 cut(s) 5, 20, 547, 780, 953, 985, 1032
BshNI GGYRCC 2 cut(s) 197, 726
BslFI GGGAC 1 cut(s) 1054
BslI CCNNNNNNNGG 3 cut(s) 15, 16, 220
BsmFI GGGAC 1 cut(s) 1054
BsmI GAATGC 2 cut(s) 26, 558
BsnI GGCC 7 cut(s) 5, 20, 547, 780, 953, 985, 1032
Bsp119I TTCGAA 1 cut(s) 59
Bsp1286I GDGCHC 2 cut(s) 200, 539
Bsp1407I TGTACA 1 cut(s) 1010
Bsp143I GATC 3 cut(s) 796, 901, 1000
Bsp19I CCATGG 2 cut(s) 219, 1072
BspACI CCGC 3 cut(s) 67, 216, 454
BspANI GGCC 7 cut(s) 5, 20, 547, 780, 953, 985, 1032
BspCNI CTCAG 1 cut(s) 337
BspFNI CGCG 1 cut(s) 67
BspLI GGNNCC 4 cut(s) 199, 728, 986, 1070
BspMI ACCTGC 1 cut(s) 1149
BspOI GCTAGC 1 cut(s) 707
BspPI GGATC 2 cut(s) 909, 1008
BspQI GCTCTTC 1 cut(s) 1059
BspT104I TTCGAA 1 cut(s) 59
BspT107I GGYRCC 2 cut(s) 197, 726
BspTI CTTAAG 1 cut(s) 589
BsrDI GCAATG 3 cut(s) 173, 724, 975
BsrGI TGTACA 1 cut(s) 1010
BsrI ACTGG 2 cut(s) 610, 961
BssECI CCNNGG 3 cut(s) 219, 948, 1072
BssMI GATC 3 cut(s) 796, 901, 1000
BssT1I CCWWGG 2 cut(s) 219, 1072
Bst2UI CCWGG 1 cut(s) 950
Bst4CI ACNGT 1 cut(s) 534
Bst6I CTCTTC 2 cut(s) 662, 1059
BstAFI CTTAAG 1 cut(s) 589
BstAUI TGTACA 1 cut(s) 1010
BstBI TTCGAA 1 cut(s) 59
BstC8I GCNNGC 7 cut(s) 302, 451, 458, 494, 705, 1050, 1089
BstDEI CTNAG 1 cut(s) 345
BstDSI CCRYGG 2 cut(s) 219, 1072
BstEII GGTNACC 1 cut(s) 223
BstF5I GGATG 7 cut(s) 75, 210, 574, 697, 775, 1111, 1158
BstFNI CGCG 1 cut(s) 67
BstH2I RGCGCY 1 cut(s) 126
BstHHI GCGC 1 cut(s) 125
BstKTI GATC 3 cut(s) 799, 904, 1003
BstMBI GATC 3 cut(s) 796, 901, 1000
BstMWI GCNNNNNNNGC 7 cut(s) 184, 288, 297, 553, 660, 959, 1022
BstNI CCWGG 1 cut(s) 950
BstNSI RCATGY 1 cut(s) 453
BstPI GGTNACC 1 cut(s) 223
BstSCI CCNGG 1 cut(s) 948
BstSLI GKGCMC 2 cut(s) 200, 539
BstUI CGCG 1 cut(s) 67
BstV1I GCAGC 6 cut(s) 112, 628, 1028, 1031, 1032, 1034
BstV2I GAAGAC 1 cut(s) 392
BsuRI GGCC 7 cut(s) 5, 20, 547, 780, 953, 985, 1032
BtgI CCRYGG 2 cut(s) 219, 1072
BtgZI GCGATG 1 cut(s) 7
BtsCI GGATG 7 cut(s) 75, 210, 574, 697, 775, 1111, 1158
BtsI GCAGTG 2 cut(s) 153, 298
BtsIMutI CAGTG 6 cut(s) 153, 298, 314, 539, 633, 954
BveI ACCTGC 1 cut(s) 1149
Cac8I GCNNGC 7 cut(s) 302, 451, 458, 494, 705, 1050, 1089
CaiI CAGNNNCTG 1 cut(s) 125
CfoI GCGC 1 cut(s) 125
Cfr13I GGNCC 5 cut(s) 18, 806, 984, 1068, 1161
Csp6I GTAC 5 cut(s) 144, 530, 1005, 1011, 1118
CviAII CATG 4 cut(s) 220, 450, 864, 1073
CviQI GTAC 5 cut(s) 144, 530, 1005, 1011, 1118
DdeI CTNAG 1 cut(s) 345
DpnI GATC 3 cut(s) 798, 903, 1002
DpnII GATC 3 cut(s) 796, 901, 1000
DraI TTTAAA 1 cut(s) 358
EaeI YGGCCR 2 cut(s) 778, 951
Eam1104I CTCTTC 2 cut(s) 662, 1059
EarI CTCTTC 2 cut(s) 662, 1059
Eco130I CCWWGG 2 cut(s) 219, 1072
Eco47I GGWCC 3 cut(s) 806, 1068, 1161
Eco57I CTGAAG 7 cut(s) 102, 180, 290, 657, 774, 917, 1113
Eco91I GGTNACC 1 cut(s) 223
EcoO109I RGGNCCY 1 cut(s) 1068
EcoO65I GGTNACC 1 cut(s) 223
EcoRII CCWGG 1 cut(s) 948
EcoT14I CCWWGG 2 cut(s) 219, 1072
EcoT22I ATGCAT 3 cut(s) 576, 697, 975
ErhI CCWWGG 2 cut(s) 219, 1072
FaeI CATG 4 cut(s) 223, 453, 867, 1076
FalI AAGNNNNNCTT 2 cut(s) 572, 604
FaqI GGGAC 1 cut(s) 1054
FatI CATG 4 cut(s) 219, 449, 863, 1072
FauI CCCGC 1 cut(s) 223
Fnu4HI GCNGC 7 cut(s) 126, 454, 642, 1017, 1020, 1023, 1046
FokI GGATG 7 cut(s) 82, 197, 561, 704, 782, 1118, 1165
Fsp4HI GCNGC 7 cut(s) 126, 454, 642, 1017, 1020, 1023, 1046
FspBI CTAG 3 cut(s) 108, 438, 704
GlaI GCGC 1 cut(s) 124
GluI GCNGC 7 cut(s) 126, 454, 642, 1017, 1020, 1023, 1046
HaeII RGCGCY 1 cut(s) 126
HaeIII GGCC 7 cut(s) 5, 20, 547, 780, 953, 985, 1032
HhaI GCGC 1 cut(s) 125
Hin1II CATG 4 cut(s) 223, 453, 867, 1076
Hin6I GCGC 1 cut(s) 123
HinP1I GCGC 1 cut(s) 123
HincII GTYRAC 1 cut(s) 756
HindII GTYRAC 1 cut(s) 756
HindIII AAGCTT 1 cut(s) 302
HinfI GANTC 5 cut(s) 74, 407, 421, 558, 785
HpaI GTTAAC 1 cut(s) 756
HphI GGTGA 2 cut(s) 217, 416
Hpy166II GTNNAC 1 cut(s) 756
Hpy188I TCNGA 5 cut(s) 321, 412, 840, 1042, 1152
Hpy188III TCNNGA 6 cut(s) 132, 239, 522, 767, 800, 1058
Hpy8I GTNNAC 1 cut(s) 756
Hpy99I CGWCG 1 cut(s) 894
HpyAV CCTTC 4 cut(s) 101, 241, 797, 892
HpyCH4III ACNGT 1 cut(s) 534
HpyCH4V TGCA 8 cut(s) 178, 364, 574, 644, 695, 968, 973, 1048
HpyF10VI GCNNNNNNNGC 7 cut(s) 184, 288, 297, 553, 660, 959, 1022
HpyF3I CTNAG 1 cut(s) 345
Hsp92II CATG 4 cut(s) 223, 453, 867, 1076
HspAI GCGC 1 cut(s) 123
KspAI GTTAAC 1 cut(s) 756
Kzo9I GATC 3 cut(s) 796, 901, 1000
LguI GCTCTTC 1 cut(s) 1059
LmnI GCTCC 1 cut(s) 209
Lsp1109I GCAGC 6 cut(s) 112, 628, 1028, 1031, 1032, 1034
LweI GCATC 4 cut(s) 259, 583, 682, 1096
MaeI CTAG 3 cut(s) 108, 438, 704
MaeIII GTNAC 2 cut(s) 223, 404
MalI GATC 3 cut(s) 798, 903, 1002
MboI GATC 3 cut(s) 796, 901, 1000
MboII GAAGA 8 cut(s) 48, 397, 518, 649, 689, 780, 839, 1046
MhlI GDGCHC 2 cut(s) 200, 539
MlsI TGGCCA 2 cut(s) 780, 953
MluCI AATT 3 cut(s) 231, 841, 871
MluNI TGGCCA 2 cut(s) 780, 953
MlyI GAGTC 2 cut(s) 68, 401
Mox20I TGGCCA 2 cut(s) 780, 953
Mph1103I ATGCAT 3 cut(s) 576, 697, 975
MscI TGGCCA 2 cut(s) 780, 953
MseI TTAA 5 cut(s) 357, 590, 699, 755, 1201
MslI CAYNNNNRTG 2 cut(s) 31, 1188
Msp20I TGGCCA 2 cut(s) 780, 953
MspA1I CMGCKG 1 cut(s) 794
MspCI CTTAAG 1 cut(s) 589
MspR9I CCNGG 1 cut(s) 950
Mva1269I GAATGC 2 cut(s) 26, 558
MvaI CCWGG 1 cut(s) 950
MvnI CGCG 1 cut(s) 67
MwoI GCNNNNNNNGC 7 cut(s) 184, 288, 297, 553, 660, 959, 1022
NcoI CCATGG 2 cut(s) 219, 1072
NdeII GATC 3 cut(s) 796, 901, 1000
NheI GCTAGC 1 cut(s) 703
NlaIII CATG 4 cut(s) 223, 453, 867, 1076
NlaIV GGNNCC 4 cut(s) 199, 728, 986, 1070
NmuCI GTSAC 2 cut(s) 223, 404
NsiI ATGCAT 3 cut(s) 576, 697, 975
NspI RCATGY 1 cut(s) 453
NspV TTCGAA 1 cut(s) 59
PaeI GCATGC 1 cut(s) 453
PciSI GCTCTTC 1 cut(s) 1059
PctI GAATGC 2 cut(s) 26, 558
PfeI GAWTC 3 cut(s) 421, 558, 785
PkrI GCNGC 7 cut(s) 127, 455, 643, 1018, 1021, 1024, 1047
PleI GAGTC 2 cut(s) 68, 401
PpsI GAGTC 2 cut(s) 68, 401
PpuMI RGGWCCY 1 cut(s) 1068
Psp5II RGGWCCY 1 cut(s) 1068
Psp6I CCWGG 1 cut(s) 948
PspEI GGTNACC 1 cut(s) 223
PspGI CCWGG 1 cut(s) 948
PspN4I GGNNCC 4 cut(s) 199, 728, 986, 1070
PspPI GGNCC 5 cut(s) 18, 806, 984, 1068, 1161
PspPPI RGGWCCY 1 cut(s) 1068
PstNI CAGNNNCTG 1 cut(s) 125
PvuII CAGCTG 1 cut(s) 794
RsaI GTAC 5 cut(s) 145, 531, 1006, 1012, 1119
RsaNI GTAC 5 cut(s) 144, 530, 1005, 1011, 1118
RseI CAYNNNNRTG 2 cut(s) 31, 1188
SapI GCTCTTC 1 cut(s) 1059
SaqAI TTAA 5 cut(s) 357, 590, 699, 755, 1201
SatI GCNGC 7 cut(s) 126, 454, 642, 1017, 1020, 1023, 1046
Sau3AI GATC 3 cut(s) 796, 901, 1000
Sau96I GGNCC 5 cut(s) 18, 806, 984, 1068, 1161
SchI GAGTC 2 cut(s) 68, 401
ScrFI CCNGG 1 cut(s) 950
SduI GDGCHC 2 cut(s) 200, 539
SfaNI GCATC 4 cut(s) 259, 583, 682, 1096
SfuI TTCGAA 1 cut(s) 59
SinI GGWCC 3 cut(s) 806, 1068, 1161
SmiMI CAYNNNNRTG 2 cut(s) 31, 1188
SmlI CTYRAG 2 cut(s) 13, 589
SmoI CTYRAG 2 cut(s) 13, 589
SphI GCATGC 1 cut(s) 453
Sse9I AATT 3 cut(s) 231, 841, 871
SsiI CCGC 3 cut(s) 67, 216, 454
SspMI CTAG 3 cut(s) 108, 438, 704
StyD4I CCNGG 1 cut(s) 948
StyI CCWWGG 2 cut(s) 219, 1072
TaaI ACNGT 1 cut(s) 534
TaqI TCGA 3 cut(s) 59, 77, 550
TasI AATT 3 cut(s) 231, 841, 871
TatI WGTACW 2 cut(s) 1010, 1117
TauI GCSGC 1 cut(s) 456
TfiI GAWTC 3 cut(s) 421, 558, 785
Tru1I TTAA 5 cut(s) 357, 590, 699, 755, 1201
Tru9I TTAA 5 cut(s) 357, 590, 699, 755, 1201
TscAI CASTG 6 cut(s) 160, 298, 314, 539, 640, 961
TseFI GTSAC 2 cut(s) 223, 404
TseI GCWGC 6 cut(s) 125, 641, 1016, 1019, 1022, 1045
Tsp45I GTSAC 2 cut(s) 223, 404
TspDTI ATGAA 2 cut(s) 835, 840
TspGWI ACGGA 1 cut(s) 878
TspRI CASTG 6 cut(s) 160, 298, 314, 539, 640, 961
Vha464I CTTAAG 1 cut(s) 589
VpaK11BI GGWCC 3 cut(s) 806, 1068, 1161
XapI RAATTY 1 cut(s) 841
XceI RCATGY 1 cut(s) 453
XcmI CCANNNNNNNNNTGG 2 cut(s) 217, 281
XspI CTAG 3 cut(s) 108, 438, 704
Zsp2I ATGCAT 3 cut(s) 576, 697, 975
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.