Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0007999

Physical Location & Seq

Genomic Coordinates Reverse (-)

22730477 .. 22734283

Gene Structure 3807 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g24410.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1161 bp

ATGGCGTCACCCGCAAGGGCTTTAACATTGAAATGCTCTCCTTGTATCGCCTTCTCCACCAAAACCCTTATGGACTCCAAACCCACAACTCTTCACAGACCCTTTTCATGTTCAATTTCTGGGTCGCCCCCACGAGAAGCTCGTACAAGCGGCGTTCAAGAAGGCGCTATCACATTGCAGGAATGGCAGGGTTGGGGCACCGCGTCTCCAGTTCCCGCCTTGGTTACCAAAATTGTTGAGGATTTGAAGGCTTTGGAAAAAGATATTGATACCCAGATGAGCTTTGGTGGTAGTCGTGGAAAACTTCAGGGAGATTTCAAAGTGCAAGAGGATAAAAAACACCGAAAAACATATCAGGCTTTAGGTGATTCTGAACAAAAGCTCCAATTCTTTTCAGCTCGACAAATAGCATGTCGTTTGCTCGGAAGTAGGGGCTACCTTTGTCAAAAGTGCTGGCTTCCCTCTGAAGAAGATTGTATGTGTTCTAGAGTCACACAATGCACTCTATGGAATAGAATGCGGTTCTGGTTATATATGCATCCCAAGGACTTCTTGCGGCAGAACAACACTGGGAAGTTGTTATGGCAAGTATTTGGCACTGAGGCTGCAACTTTGTGCCTCTTTGGCATTTCTGAACATGAAGAAATAATGTGGAATGCATTGAAGCTTGCAGGAAAAAGCAATACTTGGTGCCTGTATCCCAACAAAAATGGAGTGTTAAAATCAGTTGAGGATGTCTTTGGCCAAGAACCGTCACCATATCTGGAAGGAACAGATACTAAGACAGATAAAGATAGGACTCTGAATTTCATTTTGATTGATGGAACATGGAACAATTCAGTTGCAATATTCAGTCGGCTGAAGGATCAAGGAGTGTCAGTATGGGGAGATGGAGACTTTCCTTGTATTTCCCTGGCCACTGGTACTTCTGCGATGCACAAACTTCGGCCCCAACCATCATGGGATCGTACCTGTACAGCAGGAGCTGCTATTGGCCTCCTCTCTGAGCTGCAACTTCTTCCAGAGTTCAGCTCCTTTGGATTAGATAAACAGGCTGAAGCTGTAGAGGATACTTTAGTTTTATTATTAGAAGCACTGACAAATAGGCGGCTTCGGATGGGCAGGTCCATCACTCGCAAAGTACGACACACAATTTGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DTW

Protein Analysis

387

Amino Acids

43.2

Weight (kDa)

8.69

Isoelectric Point (pI)

48.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007999)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03687 AT1G03687
fragaria_vesca	FvH4_6g26190 FvH4_6g26190 FvH4_6g26190
malus_domestica	MD17G1241000.v1.1
prunus_persica	Prupe.3G137200_v2.0.a1 Prupe.3G137200_v2.0.a1 Prupe.3G137200_v2.0.a1 Prupe.3G137200_v2.0.a1
pyrus_communis	pycom17g24410
rosa_chinensis	RchiOBHm_Chr2g0126401
rosa_laevigata	RLG00000018904
rosa_multiflora	Rmu_co8240339.1_g000001 Rmu_ssc0000476.1_g000001
rosa_roxburghii	Rroxscaffold_2G00117170
rosa_rugosa	Rorug02G0263100 Rorug02G0263200
rosa_samantha	Rh2AG319900 Rh2BG328500 Rh2CG308000 Rh2DG347800 Rh7CG318700
rosa_wichuraiana	Rw2G025930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1113
AccB1I	GGYRCC	2 cut(s)	197, 690
AccII	CGCG	1 cut(s)	203
AciI	CCGC	7 cut(s)	12, 150, 201, 216, 520, 556, 1108
AclWI	GGATC	2 cut(s)	873, 972
AcoI	YGGCCR	2 cut(s)	742, 915
AcsI	RAATTY	1 cut(s)	805
AcuI	CTGAAG	4 cut(s)	290, 486, 881, 1077
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	5 cut(s)	145, 925, 970, 976, 1143
AgsI	TTSAA	6 cut(s)	31, 114, 158, 247, 319, 664
AjnI	CCWGG	1 cut(s)	912
AloI	GAACNNNNNNTCC	2 cut(s)	366, 398
AluBI	AGCT	9 cut(s)	140, 282, 382, 398, 667, 986, 1009, 1032, 1061
AluI	AGCT	9 cut(s)	140, 282, 382, 398, 667, 986, 1009, 1032, 1061
Alw26I	GTCTC	2 cut(s)	210, 888
AlwI	GGATC	2 cut(s)	873, 972
AlwNI	CAGNNNCTG	1 cut(s)	986
AoxI	GGCC	4 cut(s)	742, 915, 947, 994
ApeKI	GCWGC	3 cut(s)	605, 986, 1009
ApoI	RAATTY	1 cut(s)	805
ArsI	GACNNNNNNTTYG	3 cut(s)	397, 429, 1137
AspLEI	GCGC	1 cut(s)	167
AspS9I	GGNCC	2 cut(s)	948, 1125
AsuHPI	GGTGA	2 cut(s)	377, 747
AvaII	GGWCC	1 cut(s)	1125
BaeGI	GKGCMC	1 cut(s)	200
BaeI	ACNNNNGTAYC	2 cut(s)	1062, 1095
BalI	TGGCCA	2 cut(s)	744, 917
BanI	GGYRCC	2 cut(s)	197, 690
BauI	CACGAG	1 cut(s)	132
BbvI	GCAGC	3 cut(s)	592, 973, 996
BccI	CCATC	5 cut(s)	815, 884, 964, 1111, 1136
BcgI	CGANNNNNNTGC	2 cut(s)	926, 960
BciT130I	CCWGG	1 cut(s)	914
BciVI	GTATCC	2 cut(s)	708, 1063
BcoDI	GTCTC	2 cut(s)	210, 888
BfaI	CTAG	1 cut(s)	486
BfmI	CTRYAG	1 cut(s)	1062
BfoI	RGCGCY	1 cut(s)	168
BfuAI	ACCTGC	1 cut(s)	1113
BfuI	GTATCC	2 cut(s)	708, 1063
BglI	GCCNNNNNGGC	1 cut(s)	624
BisI	GCNGC	6 cut(s)	151, 557, 606, 987, 1010, 1109
BlsI	GCNGC	6 cut(s)	152, 558, 607, 988, 1011, 1110
Bme1390I	CCNGG	1 cut(s)	914
Bme18I	GGWCC	1 cut(s)	1125
BmgT120I	GGNCC	2 cut(s)	948, 1125
BmiI	GGNNCC	3 cut(s)	199, 692, 950
BmrFI	CCNGG	1 cut(s)	914
BmrI	ACTGGG	1 cut(s)	579
BmsI	GCATC	2 cut(s)	547, 924
BmuI	ACTGGG	1 cut(s)	579
BplI	GAGNNNNNCTC	2 cut(s)	1016, 1048
BpmI	CTGGAG	1 cut(s)	192
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	3 cut(s)	219, 543, 912
BsaXI	ACNNNNNCTCC	6 cut(s)	190, 220, 366, 396, 864, 894
Bse1I	ACTGG	3 cut(s)	209, 574, 925
Bse3DI	GCAATG	1 cut(s)	173
BseBI	CCWGG	1 cut(s)	914
BseDI	CCNNGG	3 cut(s)	219, 543, 912
BseGI	GGATG	3 cut(s)	538, 739, 1122
BseMI	GCAATG	1 cut(s)	173
BseMII	CTCAG	2 cut(s)	591, 996
BseNI	ACTGG	3 cut(s)	209, 574, 925
BseRI	GAGGAG	1 cut(s)	989
BseSI	GKGCMC	1 cut(s)	200
BseXI	GCAGC	3 cut(s)	592, 973, 996
Bsh1236I	CGCG	1 cut(s)	203
BshFI	GGCC	4 cut(s)	744, 917, 949, 996
BshNI	GGYRCC	2 cut(s)	197, 690
BsmAI	GTCTC	2 cut(s)	210, 888
BsmBI	CGTCTC	1 cut(s)	210
BsmI	GAATGC	2 cut(s)	522, 661
BsnI	GGCC	4 cut(s)	744, 917, 949, 996
Bsp1286I	GDGCHC	1 cut(s)	200
Bsp1407I	TGTACA	1 cut(s)	974
Bsp143I	GATC	2 cut(s)	865, 964
BspACI	CCGC	7 cut(s)	12, 150, 201, 216, 520, 556, 1108
BspANI	GGCC	4 cut(s)	744, 917, 949, 996
BspCNI	CTCAG	2 cut(s)	592, 997
BspFNI	CGCG	1 cut(s)	203
BspLI	GGNNCC	3 cut(s)	199, 692, 950
BspMI	ACCTGC	1 cut(s)	1113
BspPI	GGATC	2 cut(s)	873, 972
BspT107I	GGYRCC	2 cut(s)	197, 690
BsrDI	GCAATG	1 cut(s)	173
BsrGI	TGTACA	1 cut(s)	974
BsrI	ACTGG	3 cut(s)	209, 574, 925
BssECI	CCNNGG	3 cut(s)	219, 543, 912
BssMI	GATC	2 cut(s)	865, 964
BssNI	GRCGYC	1 cut(s)	5
BssSI	CACGAG	1 cut(s)	132
BssT1I	CCWWGG	2 cut(s)	219, 543
Bst2BI	CACGAG	1 cut(s)	132
Bst2UI	CCWGG	1 cut(s)	914
Bst4CI	ACNGT	1 cut(s)	753
Bst6I	CTCTTC	1 cut(s)	96
BstACI	GRCGYC	1 cut(s)	5
BstAPI	GCANNNNNTGC	1 cut(s)	986
BstAUI	TGTACA	1 cut(s)	974
BstC8I	GCNNGC	2 cut(s)	455, 669
BstDEI	CTNAG	3 cut(s)	600, 780, 1005
BstEII	GGTNACC	1 cut(s)	223
BstF5I	GGATG	3 cut(s)	538, 739, 1122
BstFNI	CGCG	1 cut(s)	203
BstH2I	RGCGCY	1 cut(s)	168
BstHHI	GCGC	1 cut(s)	167
BstKTI	GATC	2 cut(s)	868, 967
BstMAI	GTCTC	2 cut(s)	210, 888
BstMBI	GATC	2 cut(s)	865, 964
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 184, 624, 986
BstNI	CCWGG	1 cut(s)	914
BstNSI	RCATGY	1 cut(s)	414
BstPI	GGTNACC	1 cut(s)	223
BstSCI	CCNGG	1 cut(s)	912
BstSFI	CTRYAG	1 cut(s)	1062
BstSLI	GKGCMC	1 cut(s)	200
BstUI	CGCG	1 cut(s)	203
BstV1I	GCAGC	3 cut(s)	592, 973, 996
BsuI	GTATCC	2 cut(s)	708, 1063
BsuRI	GGCC	4 cut(s)	744, 917, 949, 996
BtgZI	GCGATG	1 cut(s)	947
BtsCI	GGATG	3 cut(s)	538, 739, 1122
BtsIMutI	CAGTG	4 cut(s)	567, 597, 918, 1094
BveI	ACCTGC	1 cut(s)	1113
Cac8I	GCNNGC	2 cut(s)	455, 669
CaiI	CAGNNNCTG	1 cut(s)	986
CfoI	GCGC	1 cut(s)	167
Cfr13I	GGNCC	2 cut(s)	948, 1125
CseI	GACGC	1 cut(s)	192
Csp6I	GTAC	5 cut(s)	144, 924, 969, 975, 1142
CviAII	CATG	5 cut(s)	108, 411, 638, 828, 960
CviQI	GTAC	5 cut(s)	144, 924, 969, 975, 1142
DdeI	CTNAG	3 cut(s)	600, 780, 1005
DpnI	GATC	2 cut(s)	867, 966
DpnII	GATC	2 cut(s)	865, 964
EaeI	YGGCCR	2 cut(s)	742, 915
Eam1104I	CTCTTC	1 cut(s)	96
EarI	CTCTTC	1 cut(s)	96
Eco130I	CCWWGG	2 cut(s)	219, 543
Eco47I	GGWCC	1 cut(s)	1125
Eco57I	CTGAAG	4 cut(s)	290, 486, 881, 1077
Eco91I	GGTNACC	1 cut(s)	223
EcoO65I	GGTNACC	1 cut(s)	223
EcoRII	CCWGG	1 cut(s)	912
EcoT14I	CCWWGG	2 cut(s)	219, 543
EcoT22I	ATGCAT	2 cut(s)	540, 661
ErhI	CCWWGG	2 cut(s)	219, 543
Esp3I	CGTCTC	1 cut(s)	210
FaeI	CATG	5 cut(s)	111, 414, 641, 831, 963
FalI	AAGNNNNNCTT	4 cut(s)	536, 568, 670, 702
FatI	CATG	5 cut(s)	107, 410, 637, 827, 959
FauI	CCCGC	2 cut(s)	19, 223
Fnu4HI	GCNGC	6 cut(s)	151, 557, 606, 987, 1010, 1109
FokI	GGATG	3 cut(s)	525, 746, 1129
Fsp4HI	GCNGC	6 cut(s)	151, 557, 606, 987, 1010, 1109
FspBI	CTAG	1 cut(s)	486
GlaI	GCGC	1 cut(s)	166
GluI	GCNGC	6 cut(s)	151, 557, 606, 987, 1010, 1109
GsuI	CTGGAG	1 cut(s)	192
HaeII	RGCGCY	1 cut(s)	168
HaeIII	GGCC	4 cut(s)	744, 917, 949, 996
HgaI	GACGC	1 cut(s)	192
HhaI	GCGC	1 cut(s)	167
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	5 cut(s)	111, 414, 641, 831, 963
Hin6I	GCGC	1 cut(s)	165
HinP1I	GCGC	1 cut(s)	165
HindIII	AAGCTT	1 cut(s)	665
HinfI	GANTC	4 cut(s)	74, 368, 489, 799
HphI	GGTGA	2 cut(s)	377, 747
Hpy188I	TCNGA	7 cut(s)	373, 425, 466, 634, 804, 1006, 1116
Hpy188III	TCNNGA	4 cut(s)	158, 486, 764, 1022
HpyAV	CCTTC	5 cut(s)	61, 155, 241, 761, 856
HpyCH4III	ACNGT	1 cut(s)	753
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 184, 624, 986
HpyF3I	CTNAG	3 cut(s)	600, 780, 1005
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	5 cut(s)	111, 414, 641, 831, 963
HspAI	GCGC	1 cut(s)	165
Kzo9I	GATC	2 cut(s)	865, 964
LmnI	GCTCC	3 cut(s)	387, 983, 1037
Lsp1109I	GCAGC	3 cut(s)	592, 973, 996
LweI	GCATC	2 cut(s)	547, 924
MaeI	CTAG	1 cut(s)	486
MaeIII	GTNAC	4 cut(s)	6, 223, 490, 753
MalI	GATC	2 cut(s)	867, 966
MboI	GATC	2 cut(s)	865, 964
MboII	GAAGA	5 cut(s)	83, 479, 482, 653, 1010
MhlI	GDGCHC	1 cut(s)	200
MlsI	TGGCCA	2 cut(s)	744, 917
MluCI	AATT	6 cut(s)	114, 231, 386, 805, 835, 1152
MluNI	TGGCCA	2 cut(s)	744, 917
MlyI	GAGTC	3 cut(s)	68, 498, 793
MnlI	CCTC	9 cut(s)	232, 322, 472, 595, 629, 724, 1007, 1010, 1060
Mox20I	TGGCCA	2 cut(s)	744, 917
Mph1103I	ATGCAT	2 cut(s)	540, 661
MscI	TGGCCA	2 cut(s)	744, 917
MseI	TTAA	2 cut(s)	23, 719
MslI	CAYNNNNRTG	1 cut(s)	31
Msp20I	TGGCCA	2 cut(s)	744, 917
MspR9I	CCNGG	1 cut(s)	914
Mva1269I	GAATGC	2 cut(s)	522, 661
MvaI	CCWGG	1 cut(s)	914
MvnI	CGCG	1 cut(s)	203
MwoI	GCNNNNNNNGC	4 cut(s)	11, 184, 624, 986
NdeII	GATC	2 cut(s)	865, 964
NlaIII	CATG	5 cut(s)	111, 414, 641, 831, 963
NlaIV	GGNNCC	3 cut(s)	199, 692, 950
NmuCI	GTSAC	3 cut(s)	6, 490, 753
NsiI	ATGCAT	2 cut(s)	540, 661
NspI	RCATGY	1 cut(s)	414
PcsI	WCGNNNNNNNCGW	2 cut(s)	139, 1141
PctI	GAATGC	2 cut(s)	522, 661
PfeI	GAWTC	1 cut(s)	368
PkrI	GCNGC	6 cut(s)	152, 558, 607, 988, 1011, 1110
PleI	GAGTC	3 cut(s)	68, 497, 793
PpsI	GAGTC	3 cut(s)	68, 497, 793
Psp6I	CCWGG	1 cut(s)	912
PspEI	GGTNACC	1 cut(s)	223
PspGI	CCWGG	1 cut(s)	912
PspN4I	GGNNCC	3 cut(s)	199, 692, 950
PspPI	GGNCC	2 cut(s)	948, 1125
PstNI	CAGNNNCTG	1 cut(s)	986
RsaI	GTAC	5 cut(s)	145, 925, 970, 976, 1143
RsaNI	GTAC	5 cut(s)	144, 924, 969, 975, 1142
RseI	CAYNNNNRTG	1 cut(s)	31
SaqAI	TTAA	2 cut(s)	23, 719
SatI	GCNGC	6 cut(s)	151, 557, 606, 987, 1010, 1109
Sau3AI	GATC	2 cut(s)	865, 964
Sau96I	GGNCC	2 cut(s)	948, 1125
SchI	GAGTC	3 cut(s)	68, 498, 793
ScrFI	CCNGG	1 cut(s)	914
SduI	GDGCHC	1 cut(s)	200
SfaNI	GCATC	2 cut(s)	547, 924
SfcI	CTRYAG	1 cut(s)	1062
SinI	GGWCC	1 cut(s)	1125
SmiMI	CAYNNNNRTG	1 cut(s)	31
Sse9I	AATT	6 cut(s)	114, 231, 386, 805, 835, 1152
SsiI	CCGC	7 cut(s)	12, 150, 201, 216, 520, 556, 1108
SspI	AATATT	1 cut(s)	849
SspMI	CTAG	1 cut(s)	486
StyD4I	CCNGG	1 cut(s)	912
StyI	CCWWGG	2 cut(s)	219, 543
TaaI	ACNGT	1 cut(s)	753
TaqI	TCGA	1 cut(s)	400
TasI	AATT	6 cut(s)	114, 231, 386, 805, 835, 1152
TatI	WGTACW	1 cut(s)	974
TauI	GCSGC	3 cut(s)	153, 559, 1111
TfiI	GAWTC	1 cut(s)	368
Tru1I	TTAA	2 cut(s)	23, 719
Tru9I	TTAA	2 cut(s)	23, 719
TscAI	CASTG	4 cut(s)	574, 604, 925, 1101
TseFI	GTSAC	3 cut(s)	6, 490, 753
TseI	GCWGC	3 cut(s)	605, 986, 1009
Tsp45I	GTSAC	3 cut(s)	6, 490, 753
TspDTI	ATGAA	3 cut(s)	96, 654, 799
TspRI	CASTG	4 cut(s)	574, 604, 925, 1101
VpaK11BI	GGWCC	1 cut(s)	1125
XapI	RAATTY	1 cut(s)	805
XbaI	TCTAGA	1 cut(s)	485
XceI	RCATGY	1 cut(s)	414
XcmI	CCANNNNNNNNNTGG	2 cut(s)	67, 281
XspI	CTAG	1 cut(s)	486
Zsp2I	ATGCAT	2 cut(s)	540, 661

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.