Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005799

Physical Location & Seq

Genomic Coordinates Reverse (-)

1050505 .. 1051194

Gene Structure 690 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G04070.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 285 bp

ATGGCGCCTAAGAAAATCGGAGCCGGCAAAGGCGATTCGAGCATCTTGGCGAAGATTTCAAACTACGATATCGTTTCTCAGGGAAGACGCGCCGCTTGCGATGCCGTCTACGTGTCGAAGAAGCTGTTAAAGAGCACCGGGAAGGCGGCGTGGATCGCCGGTACGACGTTTCTCATCCTTGCCGTGCCTTTGATCTTAGAGTTGGAGCAAGATCATCGATTAGGCGAGATAGATTTTGAGCAGGCGAGTCTTCTCGGAACCCCACCGGTCGGTGCGATGCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005741 GO:0005742 GO:0005773 GO:0005774 GO:0006605 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0007006 GO:0008104 GO:0008150 GO:0008320 GO:0008565 GO:0009536 GO:0009987 GO:0015031 GO:0015399 GO:0015405 GO:0015450 GO:0015833 GO:0016020 GO:0016021 GO:0016043 GO:0017038 GO:0019867 GO:0022804 GO:0022857 GO:0022884 GO:0030150 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031306 GO:0031307 GO:0031966 GO:0031967 GO:0031968 GO:0031975 GO:0032592 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0042887 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044437 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0044743 GO:0045040 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0061024 GO:0065002 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072655 GO:0072657 GO:0090150 GO:0090151 GO:0098573 GO:0098588 GO:0098796 GO:0098798 GO:0098799 GO:0098805 GO:1904680 GO:1990542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tom22

Protein Analysis

94

Amino Acids

9.94

Weight (kDa)

8.82

Isoelectric Point (pI)

41.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Tom22	PF04281	37 - 78	3.8e-06	Mitochondrial import receptor subunit Tom22

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005799)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04070 AT5G43970
fragaria_vesca	FvH4_2g20580
malus_domestica	MD00G1060300.v1.1 MD13G1221200.v1.1 MD15G1267400.v1.1 MD15G1267500.v1.1
prunus_persica	Prupe.1G047800_v2.0.a1 Prupe.8G216100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0395371 RchiOBHm_Chr6g0286751
rosa_laevigata	RLG00000012545
rosa_multiflora	Rmu_sc0007546.1_g000010 Rmu_sc0036247.1_g000001
rosa_roxburghii	Rroxscaffold_7G00182040
rosa_rugosa	Rorug03G0358000 Rorug06G0182800
rosa_samantha	Rh4BG057800 Rh4CG063300 Rh4DG054400 Rh6AG295200 Rh6BG299100 Rh6CG299100 Rh6DG291000
rosa_wichuraiana	Rw0G003270 Rw0G007690 Rw4G004730 Rw6G025420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	4
AccI	GTMKAC	1 cut(s)	108
AccII	CGCG	1 cut(s)	90
AciI	CCGC	2 cut(s)	93, 146
AclWI	GGATC	1 cut(s)	161
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	1 cut(s)	163
AfiI	CCNNNNNNNGG	1 cut(s)	269
AflIII	ACRYGT	1 cut(s)	111
AgeI	ACCGGT	1 cut(s)	265
AgsI	TTSAA	1 cut(s)	60
AluBI	AGCT	1 cut(s)	124
AluI	AGCT	1 cut(s)	124
Alw21I	GWGCWC	1 cut(s)	137
AlwI	GGATC	1 cut(s)	161
AsiGI	ACCGGT	1 cut(s)	265
AspLEI	GCGC	2 cut(s)	7, 92
AsuC2I	CCSGG	1 cut(s)	139
BanI	GGYRCC	1 cut(s)	4
BbsI	GAAGAC	2 cut(s)	91, 242
Bbv12I	GWGCWC	1 cut(s)	137
BceAI	ACGGC	2 cut(s)	89, 167
BcgI	CGANNNNNNTGC	2 cut(s)	197, 231
BcnI	CCSGG	1 cut(s)	139
BfoI	RGCGCY	1 cut(s)	8
BisI	GCNGC	2 cut(s)	93, 147
BlsI	GCNGC	2 cut(s)	94, 148
Bme1390I	CCNGG	1 cut(s)	139
BmiI	GGNNCC	3 cut(s)	6, 22, 259
BmrFI	CCNGG	1 cut(s)	139
BmsI	GCATC	3 cut(s)	51, 91, 267
BpiI	GAAGAC	2 cut(s)	91, 242
BpuMI	CCSGG	1 cut(s)	139
Bsa29I	ATCGAT	1 cut(s)	217
BsaAI	YACGTR	1 cut(s)	112
BsaHI	GRCGYC	1 cut(s)	5
BsaWI	WCCGGW	1 cut(s)	265
Bsc4I	CCNNNNNNNGG	1 cut(s)	269
Bse118I	RCCGGY	3 cut(s)	23, 158, 265
BseCI	ATCGAT	1 cut(s)	217
BseGI	GGATG	1 cut(s)	174
BseLI	CCNNNNNNNGG	1 cut(s)	269
BseMII	CTCAG	1 cut(s)	92
Bsh1236I	CGCG	1 cut(s)	90
Bsh1285I	CGRYCG	1 cut(s)	270
BshNI	GGYRCC	1 cut(s)	4
BshTI	ACCGGT	1 cut(s)	265
BshVI	ATCGAT	1 cut(s)	217
BsiEI	CGRYCG	1 cut(s)	270
BsiHKAI	GWGCWC	1 cut(s)	137
BsiSI	CCGG	4 cut(s)	24, 138, 159, 266
BslI	CCNNNNNNNGG	1 cut(s)	269
Bsp1286I	GDGCHC	1 cut(s)	137
Bsp143I	GATC	3 cut(s)	153, 192, 211
BspACI	CCGC	2 cut(s)	93, 146
BspCNI	CTCAG	1 cut(s)	91
BspDI	ATCGAT	1 cut(s)	217
BspFNI	CGCG	1 cut(s)	90
BspLI	GGNNCC	3 cut(s)	6, 22, 259
BspPI	GGATC	1 cut(s)	161
BspT107I	GGYRCC	1 cut(s)	4
BsrFI	RCCGGY	3 cut(s)	23, 158, 265
BssAI	RCCGGY	3 cut(s)	23, 158, 265
BssMI	GATC	3 cut(s)	153, 192, 211
BssNI	GRCGYC	1 cut(s)	5
BstACI	GRCGYC	1 cut(s)	5
BstBAI	YACGTR	1 cut(s)	112
BstC8I	GCNNGC	3 cut(s)	25, 97, 243
BstDEI	CTNAG	3 cut(s)	9, 78, 196
BstF5I	GGATG	1 cut(s)	174
BstFNI	CGCG	1 cut(s)	90
BstH2I	RGCGCY	1 cut(s)	8
BstHHI	GCGC	2 cut(s)	7, 92
BstKTI	GATC	3 cut(s)	156, 195, 214
BstMBI	GATC	3 cut(s)	153, 192, 211
BstMCI	CGRYCG	1 cut(s)	270
BstMWI	GCNNNNNNNGC	4 cut(s)	39, 96, 101, 155
BstSCI	CCNGG	1 cut(s)	137
BstUI	CGCG	1 cut(s)	90
BstV2I	GAAGAC	2 cut(s)	91, 242
Bsu15I	ATCGAT	1 cut(s)	217
BsuTUI	ATCGAT	1 cut(s)	217
BtgZI	GCGATG	1 cut(s)	114
BtsCI	GGATG	1 cut(s)	174
Cac8I	GCNNGC	3 cut(s)	25, 97, 243
CfoI	GCGC	2 cut(s)	7, 92
Cfr10I	RCCGGY	3 cut(s)	23, 158, 265
ClaI	ATCGAT	1 cut(s)	217
CseI	GACGC	1 cut(s)	96
Csp6I	GTAC	1 cut(s)	162
CspAI	ACCGGT	1 cut(s)	265
CviJI	RGCY	2 cut(s)	23, 124
CviKI_1	RGCY	2 cut(s)	23, 124
CviQI	GTAC	1 cut(s)	162
DdeI	CTNAG	3 cut(s)	9, 78, 196
DinI	GGCGCC	1 cut(s)	6
DpnI	GATC	3 cut(s)	155, 194, 213
DpnII	GATC	3 cut(s)	153, 192, 211
Eco32I	GATATC	1 cut(s)	70
EcoRV	GATATC	1 cut(s)	70
EgeI	GGCGCC	1 cut(s)	6
EheI	GGCGCC	1 cut(s)	6
FblI	GTMKAC	1 cut(s)	108
Fnu4HI	GCNGC	2 cut(s)	93, 147
FokI	GGATG	1 cut(s)	161
Fsp4HI	GCNGC	2 cut(s)	93, 147
GlaI	GCGC	2 cut(s)	6, 91
GluI	GCNGC	2 cut(s)	93, 147
HaeII	RGCGCY	1 cut(s)	8
HapII	CCGG	4 cut(s)	24, 138, 159, 266
HgaI	GACGC	1 cut(s)	96
HhaI	GCGC	2 cut(s)	7, 92
Hin1I	GRCGYC	1 cut(s)	5
Hin6I	GCGC	2 cut(s)	5, 90
HinP1I	GCGC	2 cut(s)	5, 90
HinfI	GANTC	2 cut(s)	35, 247
HpaII	CCGG	4 cut(s)	24, 138, 159, 266
Hpy166II	GTNNAC	1 cut(s)	109
Hpy188I	TCNGA	2 cut(s)	20, 257
Hpy8I	GTNNAC	1 cut(s)	109
Hpy99I	CGWCG	1 cut(s)	169
HpyAV	CCTTC	1 cut(s)	136
HpyCH4IV	ACGT	2 cut(s)	111, 167
HpyF10VI	GCNNNNNNNGC	4 cut(s)	39, 96, 101, 155
HpyF3I	CTNAG	3 cut(s)	9, 78, 196
HpySE526I	ACGT	2 cut(s)	111, 167
Hsp92I	GRCGYC	1 cut(s)	5
HspAI	GCGC	2 cut(s)	5, 90
KasI	GGCGCC	1 cut(s)	4
KroI	GCCGGC	1 cut(s)	23
KroNI	GCCGGC	1 cut(s)	25
Kzo9I	GATC	3 cut(s)	153, 192, 211
LmnI	GCTCC	2 cut(s)	20, 205
LpnPI	CCDG	6 cut(s)	37, 65, 151, 172, 227, 279
LweI	GCATC	3 cut(s)	51, 91, 267
MaeII	ACGT	2 cut(s)	111, 167
MalI	GATC	3 cut(s)	155, 194, 213
MboI	GATC	3 cut(s)	153, 192, 211
MboII	GAAGA	4 cut(s)	64, 96, 130, 242
MhlI	GDGCHC	1 cut(s)	137
Mly113I	GGCGCC	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	256
MmeI	TCCRAC	1 cut(s)	183
MroNI	GCCGGC	1 cut(s)	23
MseI	TTAA	1 cut(s)	128
MspI	CCGG	4 cut(s)	24, 138, 159, 266
MspR9I	CCNGG	1 cut(s)	139
MvnI	CGCG	1 cut(s)	90
MwoI	GCNNNNNNNGC	4 cut(s)	39, 96, 101, 155
NaeI	GCCGGC	1 cut(s)	25
NarI	GGCGCC	1 cut(s)	5
NciI	CCSGG	1 cut(s)	139
NdeII	GATC	3 cut(s)	153, 192, 211
NgoMIV	GCCGGC	1 cut(s)	23
NlaIV	GGNNCC	3 cut(s)	6, 22, 259
PdiI	GCCGGC	1 cut(s)	25
PfeI	GAWTC	1 cut(s)	35
PinAI	ACCGGT	1 cut(s)	265
PkrI	GCNGC	2 cut(s)	94, 148
PleI	GAGTC	1 cut(s)	255
PluTI	GGCGCC	1 cut(s)	8
PpsI	GAGTC	1 cut(s)	255
Ppu21I	YACGTR	1 cut(s)	112
PspN4I	GGNNCC	3 cut(s)	6, 22, 259
RsaI	GTAC	1 cut(s)	163
RsaNI	GTAC	1 cut(s)	162
SaqAI	TTAA	1 cut(s)	128
SatI	GCNGC	2 cut(s)	93, 147
Sau3AI	GATC	3 cut(s)	153, 192, 211
SchI	GAGTC	1 cut(s)	256
ScrFI	CCNGG	1 cut(s)	139
SduI	GDGCHC	1 cut(s)	137
SetI	ASST	3 cut(s)	114, 126, 170
SfaNI	GCATC	3 cut(s)	51, 91, 267
SfoI	GGCGCC	1 cut(s)	6
SsiI	CCGC	2 cut(s)	93, 146
SspDI	GGCGCC	1 cut(s)	4
StyD4I	CCNGG	1 cut(s)	137
TaiI	ACGT	2 cut(s)	114, 170
TaqI	TCGA	3 cut(s)	38, 116, 217
TauI	GCSGC	2 cut(s)	95, 149
TfiI	GAWTC	1 cut(s)	35
Tru1I	TTAA	1 cut(s)	128
Tru9I	TTAA	1 cut(s)	128
XmiI	GTMKAC	1 cut(s)	108

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.