Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0005799

Physical Location & Seq

Genomic Coordinates Forward (+)

47994462 .. 47997205

Gene Structure 2744 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG299100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGTCGCTACATTTCCAAAACCACAAGGACTCAAAAAGAAAAACCTTAACCCTTCAACAAAGGGTAACGACATGTCGTTTCCACAGCCATTTACATAAACAGAAGGCAAAGGCCAAAAGCCGCAGAGAGAGAGAGAGAGCAACAACCACACACACTGAGACACACACACACGAAGAGCTCTTCTTCTCTCTCTCTGTGATGGCAAGCCCAGCTCGCAAAGGCGGAGTCTCCCTCCCGGAGAGGCGGAACCCTAAGAAGGACGACGGCGGCGACGGCGTCATCGCCAGGATCTCCCAGTCCCAAATCCTCGCTCGCGGCAAGCAAGTCACCTCCGACGCCGGCTACGTCGCCAAGAAGCTGCTGAAGAGCACCGGCAAGGCCGCCTGGATCTTCGGCACCACCTTCCTCATCCTCGTCGTCCCTCTCATCATCGAGATGGACCGCGAGCAGCAGCTCACCGAGCTCGAGTTGCAGCAGGCCAACATCCTCGGCACCTCCGCCGGCGGCTCCGCTCCTCCGGCCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005741 GO:0005742 GO:0005773 GO:0005774 GO:0006605 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0007006 GO:0008104 GO:0008150 GO:0008320 GO:0008565 GO:0009536 GO:0009987 GO:0015031 GO:0015399 GO:0015405 GO:0015450 GO:0015833 GO:0016020 GO:0016021 GO:0016043 GO:0017038 GO:0019867 GO:0022804 GO:0022857 GO:0022884 GO:0030150 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031306 GO:0031307 GO:0031966 GO:0031967 GO:0031968 GO:0031975 GO:0032592 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0042887 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044437 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0044743 GO:0045040 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0061024 GO:0065002 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072655 GO:0072657 GO:0090150 GO:0090151 GO:0098573 GO:0098588 GO:0098796 GO:0098798 GO:0098799 GO:0098805 GO:1904680 GO:1990542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tom22

Protein Analysis

175

Amino Acids

19.45

Weight (kDa)

10.24

Isoelectric Point (pI)

59.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Tom22	PF04281	110 - 160	1.9e-07	Mitochondrial import receptor subunit Tom22

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005799)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04070 AT5G43970
fragaria_vesca	FvH4_2g20580
malus_domestica	MD00G1060300.v1.1 MD13G1221200.v1.1 MD15G1267400.v1.1 MD15G1267500.v1.1
prunus_persica	Prupe.1G047800_v2.0.a1 Prupe.8G216100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0395371 RchiOBHm_Chr6g0286751
rosa_laevigata	RLG00000012545
rosa_multiflora	Rmu_sc0007546.1_g000010 Rmu_sc0036247.1_g000001
rosa_roxburghii	Rroxscaffold_7G00182040
rosa_rugosa	Rorug03G0358000 Rorug06G0182800
rosa_samantha	Rh4BG057800 Rh4CG063300 Rh4DG054400 Rh6AG295200 Rh6BG299100 Rh6CG299100 Rh6DG291000
rosa_wichuraiana	Rw0G003270 Rw0G007690 Rw4G004730 Rw6G025420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	395, 491
AccBSI	CCGCTC	1 cut(s)	512
AccII	CGCG	2 cut(s)	315, 444
AclWI	GGATC	2 cut(s)	296, 395
AcoI	YGGCCR	1 cut(s)	519
AcuI	CTGAAG	1 cut(s)	383
AcyI	GRCGYC	2 cut(s)	276, 336
AfiI	CCNNNNNNNGG	1 cut(s)	256
AflIII	ACRYGT	1 cut(s)	71
AgsI	TTSAA	1 cut(s)	56
AjnI	CCWGG	2 cut(s)	284, 383
AluBI	AGCT	5 cut(s)	178, 212, 358, 454, 463
AluI	AGCT	5 cut(s)	178, 212, 358, 454, 463
Alw21I	GWGCWC	3 cut(s)	180, 371, 465
Alw26I	GTCTC	2 cut(s)	152, 232
AlwI	GGATC	2 cut(s)	296, 395
Ama87I	CYCGRG	1 cut(s)	464
AoxI	GGCC	4 cut(s)	111, 378, 477, 519
ApeKI	GCWGC	4 cut(s)	358, 448, 451, 472
ArsI	GACNNNNNNTTYG	2 cut(s)	210, 242
AspS9I	GGNCC	1 cut(s)	439
AsuC2I	CCSGG	1 cut(s)	236
AsuHPI	GGTGA	2 cut(s)	319, 448
AvaI	CYCGRG	1 cut(s)	464
AvaII	GGWCC	1 cut(s)	439
BanI	GGYRCC	2 cut(s)	395, 491
BanII	GRGCYC	2 cut(s)	180, 465
Bbv12I	GWGCWC	3 cut(s)	180, 371, 465
BbvI	GCAGC	4 cut(s)	345, 460, 463, 484
BccI	CCATC	2 cut(s)	193, 430
BceAI	ACGGC	2 cut(s)	280, 289
BciT130I	CCWGG	2 cut(s)	286, 385
BcnI	CCSGG	1 cut(s)	236
BcoDI	GTCTC	2 cut(s)	152, 232
BisI	GCNGC	9 cut(s)	121, 268, 316, 359, 381, 449, 452, 473, 505
BlsI	GCNGC	9 cut(s)	122, 269, 317, 360, 382, 450, 453, 474, 506
Bme1390I	CCNGG	3 cut(s)	236, 286, 385
Bme18I	GGWCC	1 cut(s)	439
BmeT110I	CYCGRG	1 cut(s)	464
BmgT120I	GGNCC	1 cut(s)	439
BmiI	GGNNCC	4 cut(s)	248, 397, 493, 508
BmrFI	CCNGG	3 cut(s)	236, 286, 385
BmrI	ACTGGG	1 cut(s)	289
BmuI	ACTGGG	1 cut(s)	289
BplI	GAGNNNNNCTC	2 cut(s)	216, 248
BpuMI	CCSGG	1 cut(s)	236
BsaHI	GRCGYC	2 cut(s)	276, 336
BsaJI	CCNNGG	1 cut(s)	487
Bsc4I	CCNNNNNNNGG	1 cut(s)	256
Bse118I	RCCGGY	3 cut(s)	338, 371, 500
Bse1I	ACTGG	1 cut(s)	295
BseBI	CCWGG	2 cut(s)	286, 385
BseDI	CCNNGG	1 cut(s)	487
BseGI	GGATG	2 cut(s)	408, 483
BseLI	CCNNNNNNNGG	1 cut(s)	256
BseMII	CTCAG	1 cut(s)	147
BseNI	ACTGG	1 cut(s)	295
BseRI	GAGGAG	1 cut(s)	504
BseXI	GCAGC	4 cut(s)	345, 460, 463, 484
BseYI	CCCAGC	1 cut(s)	208
Bsh1236I	CGCG	2 cut(s)	315, 444
BshFI	GGCC	4 cut(s)	113, 380, 479, 521
BshNI	GGYRCC	2 cut(s)	395, 491
BsiHKAI	GWGCWC	3 cut(s)	180, 371, 465
BsiHKCI	CYCGRG	1 cut(s)	464
BsiSI	CCGG	5 cut(s)	236, 339, 372, 501, 518
BslFI	GGGAC	2 cut(s)	283, 404
BslI	CCNNNNNNNGG	1 cut(s)	256
BsmAI	GTCTC	2 cut(s)	152, 232
BsmFI	GGGAC	2 cut(s)	283, 404
BsnI	GGCC	4 cut(s)	113, 380, 479, 521
BsoBI	CYCGRG	1 cut(s)	464
Bsp1286I	GDGCHC	3 cut(s)	180, 371, 465
Bsp143I	GATC	2 cut(s)	288, 387
BspANI	GGCC	4 cut(s)	113, 380, 479, 521
BspCNI	CTCAG	1 cut(s)	148
BspFNI	CGCG	2 cut(s)	315, 444
BspLI	GGNNCC	4 cut(s)	248, 397, 493, 508
BspPI	GGATC	2 cut(s)	296, 395
BspQI	GCTCTTC	3 cut(s)	168, 185, 359
BspT107I	GGYRCC	2 cut(s)	395, 491
BsrBI	CCGCTC	1 cut(s)	512
BsrFI	RCCGGY	3 cut(s)	338, 371, 500
BsrI	ACTGG	1 cut(s)	295
BssAI	RCCGGY	3 cut(s)	338, 371, 500
BssECI	CCNNGG	1 cut(s)	487
BssMI	GATC	2 cut(s)	288, 387
BssNI	GRCGYC	2 cut(s)	276, 336
Bst2UI	CCWGG	2 cut(s)	286, 385
Bst6I	CTCTTC	3 cut(s)	168, 185, 359
BstACI	GRCGYC	2 cut(s)	276, 336
BstC8I	GCNNGC	8 cut(s)	205, 214, 313, 320, 340, 446, 477, 502
BstDEI	CTNAG	2 cut(s)	156, 252
BstF5I	GGATG	2 cut(s)	408, 483
BstFNI	CGCG	2 cut(s)	315, 444
BstKTI	GATC	2 cut(s)	291, 390
BstMAI	GTCTC	2 cut(s)	152, 232
BstMBI	GATC	2 cut(s)	288, 387
BstMWI	GCNNNNNNNGC	6 cut(s)	209, 213, 273, 460, 469, 518
BstNI	CCWGG	2 cut(s)	286, 385
BstNSI	RCATGY	1 cut(s)	75
BstSCI	CCNGG	3 cut(s)	234, 284, 383
BstUI	CGCG	2 cut(s)	315, 444
BstV1I	GCAGC	4 cut(s)	345, 460, 463, 484
BstX2I	RGATCY	2 cut(s)	288, 387
BstYI	RGATCY	2 cut(s)	288, 387
BsuRI	GGCC	4 cut(s)	113, 380, 479, 521
BtgZI	GCGATG	1 cut(s)	265
BtsCI	GGATG	2 cut(s)	408, 483
BtsIMutI	CAGTG	1 cut(s)	153
Cac8I	GCNNGC	8 cut(s)	205, 214, 313, 320, 340, 446, 477, 502
Cfr10I	RCCGGY	3 cut(s)	338, 371, 500
Cfr13I	GGNCC	1 cut(s)	439
CseI	GACGC	2 cut(s)	265, 344
CviAII	CATG	1 cut(s)	72
DdeI	CTNAG	2 cut(s)	156, 252
DpnI	GATC	2 cut(s)	290, 389
DpnII	GATC	2 cut(s)	288, 387
EaeI	YGGCCR	1 cut(s)	519
Eam1104I	CTCTTC	3 cut(s)	168, 185, 359
EarI	CTCTTC	3 cut(s)	168, 185, 359
EciI	GGCGGA	3 cut(s)	237, 259, 487
Ecl136II	GAGCTC	2 cut(s)	178, 463
Eco24I	GRGCYC	2 cut(s)	180, 465
Eco47I	GGWCC	1 cut(s)	439
Eco53kI	GAGCTC	2 cut(s)	178, 463
Eco57I	CTGAAG	1 cut(s)	383
Eco88I	CYCGRG	1 cut(s)	464
EcoICRI	GAGCTC	2 cut(s)	178, 463
EcoRII	CCWGG	2 cut(s)	284, 383
EcoT38I	GRGCYC	2 cut(s)	180, 465
FaeI	CATG	1 cut(s)	75
FaiI	YATR	2 cut(s)	73, 96
FaqI	GGGAC	2 cut(s)	283, 404
FatI	CATG	1 cut(s)	71
Fnu4HI	GCNGC	9 cut(s)	121, 268, 316, 359, 381, 449, 452, 473, 505
FokI	GGATG	2 cut(s)	395, 470
FriOI	GRGCYC	2 cut(s)	180, 465
Fsp4HI	GCNGC	9 cut(s)	121, 268, 316, 359, 381, 449, 452, 473, 505
GluI	GCNGC	9 cut(s)	121, 268, 316, 359, 381, 449, 452, 473, 505
GsaI	CCCAGC	1 cut(s)	212
HaeIII	GGCC	4 cut(s)	113, 380, 479, 521
HapII	CCGG	5 cut(s)	236, 339, 372, 501, 518
HgaI	GACGC	2 cut(s)	265, 344
Hin1I	GRCGYC	2 cut(s)	276, 336
Hin1II	CATG	1 cut(s)	75
HinfI	GANTC	2 cut(s)	29, 225
HpaII	CCGG	5 cut(s)	236, 339, 372, 501, 518
HphI	GGTGA	2 cut(s)	319, 448
Hpy188I	TCNGA	1 cut(s)	334
Hpy188III	TCNNGA	1 cut(s)	433
Hpy99I	CGWCG	5 cut(s)	266, 275, 338, 350, 419
HpyAV	CCTTC	4 cut(s)	62, 97, 250, 412
HpyCH4IV	ACGT	1 cut(s)	345
HpyCH4V	TGCA	1 cut(s)	472
HpyF10VI	GCNNNNNNNGC	6 cut(s)	209, 213, 273, 460, 469, 518
HpyF3I	CTNAG	2 cut(s)	156, 252
HpySE526I	ACGT	1 cut(s)	345
Hsp92I	GRCGYC	2 cut(s)	276, 336
Hsp92II	CATG	1 cut(s)	75
KroI	GCCGGC	2 cut(s)	338, 500
KroNI	GCCGGC	2 cut(s)	340, 502
Kzo9I	GATC	2 cut(s)	288, 387
LguI	GCTCTTC	3 cut(s)	168, 185, 359
LmnI	GCTCC	2 cut(s)	512, 517
Lsp1109I	GCAGC	4 cut(s)	345, 460, 463, 484
MaeII	ACGT	1 cut(s)	345
MaeIII	GTNAC	2 cut(s)	64, 325
MalI	GATC	2 cut(s)	290, 389
MbiI	CCGCTC	1 cut(s)	512
MboI	GATC	2 cut(s)	288, 387
MboII	GAAGA	5 cut(s)	172, 175, 185, 376, 382
MflI	RGATCY	2 cut(s)	288, 387
MhlI	GDGCHC	3 cut(s)	180, 371, 465
MlyI	GAGTC	2 cut(s)	23, 234
MmeI	TCCRAC	1 cut(s)	357
MreI	CGCCGGCG	1 cut(s)	500
MroNI	GCCGGC	2 cut(s)	338, 500
MseI	TTAA	1 cut(s)	47
MslI	CAYNNNNRTG	1 cut(s)	434
MspI	CCGG	5 cut(s)	236, 339, 372, 501, 518
MspR9I	CCNGG	3 cut(s)	236, 286, 385
MvaI	CCWGG	2 cut(s)	286, 385
MvnI	CGCG	2 cut(s)	315, 444
MwoI	GCNNNNNNNGC	6 cut(s)	209, 213, 273, 460, 469, 518
NaeI	GCCGGC	2 cut(s)	340, 502
NciI	CCSGG	1 cut(s)	236
NdeII	GATC	2 cut(s)	288, 387
NgoMIV	GCCGGC	2 cut(s)	338, 500
NlaIII	CATG	1 cut(s)	75
NlaIV	GGNNCC	4 cut(s)	248, 397, 493, 508
NmeAIII	GCCGAG	1 cut(s)	468
NmuCI	GTSAC	1 cut(s)	325
NspI	RCATGY	1 cut(s)	75
PaeR7I	CTCGAG	1 cut(s)	464
PciI	ACATGT	1 cut(s)	71
PciSI	GCTCTTC	3 cut(s)	168, 185, 359
PcsI	WCGNNNNNNNCGW	2 cut(s)	267, 342
PdiI	GCCGGC	2 cut(s)	340, 502
PflFI	GACNNNGTC	1 cut(s)	275
PfoI	TCCNGGA	1 cut(s)	234
PkrI	GCNGC	9 cut(s)	122, 269, 317, 360, 382, 450, 453, 474, 506
PleI	GAGTC	2 cut(s)	23, 233
PpsI	GAGTC	2 cut(s)	23, 233
PscI	ACATGT	1 cut(s)	71
Psp124BI	GAGCTC	2 cut(s)	180, 465
Psp6I	CCWGG	2 cut(s)	284, 383
PspFI	CCCAGC	1 cut(s)	208
PspGI	CCWGG	2 cut(s)	284, 383
PspN4I	GGNNCC	4 cut(s)	248, 397, 493, 508
PspPI	GGNCC	1 cut(s)	439
PspXI	VCTCGAGB	1 cut(s)	464
PsuI	RGATCY	2 cut(s)	288, 387
PsyI	GACNNNGTC	1 cut(s)	275
RseI	CAYNNNNRTG	1 cut(s)	434
SacI	GAGCTC	2 cut(s)	180, 465
SapI	GCTCTTC	3 cut(s)	168, 185, 359
SaqAI	TTAA	1 cut(s)	47
SatI	GCNGC	9 cut(s)	121, 268, 316, 359, 381, 449, 452, 473, 505
Sau3AI	GATC	2 cut(s)	288, 387
Sau96I	GGNCC	1 cut(s)	439
SchI	GAGTC	2 cut(s)	23, 234
ScrFI	CCNGG	3 cut(s)	236, 286, 385
SduI	GDGCHC	3 cut(s)	180, 371, 465
Sfr274I	CTCGAG	1 cut(s)	464
SgrAI	CRCCGGYG	1 cut(s)	500
SinI	GGWCC	1 cut(s)	439
SlaI	CTCGAG	1 cut(s)	464
SmiMI	CAYNNNNRTG	1 cut(s)	434
SmlI	CTYRAG	1 cut(s)	464
SmoI	CTYRAG	1 cut(s)	464
SstI	GAGCTC	2 cut(s)	180, 465
StyD4I	CCNGG	3 cut(s)	234, 284, 383
TaiI	ACGT	1 cut(s)	348
TaqI	TCGA	2 cut(s)	432, 465
TauI	GCSGC	5 cut(s)	123, 270, 318, 383, 507
Tru1I	TTAA	1 cut(s)	47
Tru9I	TTAA	1 cut(s)	47
TscAI	CASTG	1 cut(s)	160
TseFI	GTSAC	1 cut(s)	325
TseI	GCWGC	4 cut(s)	358, 448, 451, 472
Tsp45I	GTSAC	1 cut(s)	325
TspRI	CASTG	1 cut(s)	160
Tth111I	GACNNNGTC	1 cut(s)	275
VpaK11BI	GGWCC	1 cut(s)	439
XceI	RCATGY	1 cut(s)	75
XhoI	CTCGAG	1 cut(s)	464

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.