Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007546.1

Orthogroup ID

OG0005799

Physical Location & Seq

Genomic Coordinates Forward (+)

60484 .. 60813

Gene Structure 330 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007546.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 330 bp

atggcaagccaagctcgcaaaggcggtgtctccctcccggagcggcggaaccctaagaaggacgatggcggcgacggcgtcatcgccaggatctcccagtcccaaatcctcgctcgaggcaagcaagtcacctccgacgccggctacgtcgccaagaagctgctgaggagcaccggcaaggccgcctggatcttcggcaccaccttcctcatccttgtcgtccctctcatcatcgagatggaccgcgagcagcagctcaccgagctcgagttccagcaggccaacatcctcggcacctccgccggcggctccgctcctccggccaagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005741 GO:0005742 GO:0005773 GO:0005774 GO:0006605 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0007006 GO:0008104 GO:0008150 GO:0008320 GO:0008565 GO:0009536 GO:0009987 GO:0015031 GO:0015399 GO:0015405 GO:0015450 GO:0015833 GO:0016020 GO:0016021 GO:0016043 GO:0017038 GO:0019867 GO:0022804 GO:0022857 GO:0022884 GO:0030150 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031306 GO:0031307 GO:0031966 GO:0031967 GO:0031968 GO:0031975 GO:0032592 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0042887 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044437 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0044743 GO:0045040 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0061024 GO:0065002 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072655 GO:0072657 GO:0090150 GO:0090151 GO:0098573 GO:0098588 GO:0098796 GO:0098798 GO:0098799 GO:0098805 GO:1904680 GO:1990542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tom22

Protein Analysis

109

Amino Acids

11.62

Weight (kDa)

9.89

Isoelectric Point (pI)

60.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005799)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04070 AT5G43970
fragaria_vesca	FvH4_2g20580
malus_domestica	MD00G1060300.v1.1 MD13G1221200.v1.1 MD15G1267400.v1.1 MD15G1267500.v1.1
prunus_persica	Prupe.1G047800_v2.0.a1 Prupe.8G216100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0395371 RchiOBHm_Chr6g0286751
rosa_laevigata	RLG00000012545
rosa_multiflora	Rmu_sc0007546.1_g000010 Rmu_sc0036247.1_g000001
rosa_roxburghii	Rroxscaffold_7G00182040
rosa_rugosa	Rorug03G0358000 Rorug06G0182800
rosa_samantha	Rh4BG057800 Rh4CG063300 Rh4DG054400 Rh6AG295200 Rh6BG299100 Rh6CG299100 Rh6DG291000
rosa_wichuraiana	Rw0G003270 Rw0G007690 Rw4G004730 Rw6G025420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	197, 293
AccBSI	CCGCTC	2 cut(s)	43, 314
AccII	CGCG	1 cut(s)	246
AciI	CCGC	9 cut(s)	24, 43, 46, 69, 183, 244, 300, 306, 312
AclWI	GGATC	2 cut(s)	98, 197
AcoI	YGGCCR	1 cut(s)	321
AcyI	GRCGYC	2 cut(s)	78, 138
AfiI	CCNNNNNNNGG	1 cut(s)	58
AjnI	CCWGG	2 cut(s)	86, 185
AluBI	AGCT	4 cut(s)	14, 160, 256, 265
AluI	AGCT	4 cut(s)	14, 160, 256, 265
Alw21I	GWGCWC	2 cut(s)	173, 267
Alw26I	GTCTC	1 cut(s)	34
AlwI	GGATC	2 cut(s)	98, 197
Ama87I	CYCGRG	2 cut(s)	114, 266
AoxI	GGCC	3 cut(s)	180, 279, 321
ApeKI	GCWGC	3 cut(s)	160, 250, 253
ArsI	GACNNNNNNTTYG	2 cut(s)	12, 44
AspS9I	GGNCC	1 cut(s)	241
AsuC2I	CCSGG	1 cut(s)	38
AsuHPI	GGTGA	2 cut(s)	121, 250
AvaI	CYCGRG	2 cut(s)	114, 266
AvaII	GGWCC	1 cut(s)	241
BanI	GGYRCC	2 cut(s)	197, 293
BanII	GRGCYC	1 cut(s)	267
Bbv12I	GWGCWC	2 cut(s)	173, 267
BbvCI	CCTCAGC	1 cut(s)	164
BbvI	GCAGC	3 cut(s)	147, 262, 265
BccI	CCATC	2 cut(s)	59, 232
BceAI	ACGGC	1 cut(s)	91
BciT130I	CCWGG	2 cut(s)	88, 187
BcnI	CCSGG	1 cut(s)	38
BcoDI	GTCTC	1 cut(s)	34
BisI	GCNGC	7 cut(s)	44, 70, 161, 183, 251, 254, 307
BlsI	GCNGC	7 cut(s)	45, 71, 162, 184, 252, 255, 308
Bme1390I	CCNGG	3 cut(s)	38, 88, 187
Bme18I	GGWCC	1 cut(s)	241
BmeT110I	CYCGRG	2 cut(s)	114, 266
BmgT120I	GGNCC	1 cut(s)	241
BmiI	GGNNCC	4 cut(s)	50, 199, 295, 310
BmrFI	CCNGG	3 cut(s)	38, 88, 187
BmrI	ACTGGG	1 cut(s)	91
BmuI	ACTGGG	1 cut(s)	91
Bpu10I	CCTNAGC	1 cut(s)	164
BpuMI	CCSGG	1 cut(s)	38
BsaHI	GRCGYC	2 cut(s)	78, 138
BsaJI	CCNNGG	1 cut(s)	289
Bsc4I	CCNNNNNNNGG	1 cut(s)	58
Bse118I	RCCGGY	3 cut(s)	140, 173, 302
Bse1I	ACTGG	1 cut(s)	97
BseBI	CCWGG	2 cut(s)	88, 187
BseDI	CCNNGG	1 cut(s)	289
BseGI	GGATG	2 cut(s)	210, 285
BseLI	CCNNNNNNNGG	1 cut(s)	58
BseMII	CTCAG	1 cut(s)	155
BseNI	ACTGG	1 cut(s)	97
BseRI	GAGGAG	2 cut(s)	181, 306
BseXI	GCAGC	3 cut(s)	147, 262, 265
Bsh1236I	CGCG	1 cut(s)	246
BshFI	GGCC	3 cut(s)	182, 281, 323
BshNI	GGYRCC	2 cut(s)	197, 293
BsiHKAI	GWGCWC	2 cut(s)	173, 267
BsiHKCI	CYCGRG	2 cut(s)	114, 266
BsiSI	CCGG	5 cut(s)	38, 141, 174, 303, 320
BslFI	GGGAC	2 cut(s)	85, 206
BslI	CCNNNNNNNGG	1 cut(s)	58
BsmAI	GTCTC	1 cut(s)	34
BsmFI	GGGAC	2 cut(s)	85, 206
BsnI	GGCC	3 cut(s)	182, 281, 323
BsoBI	CYCGRG	2 cut(s)	114, 266
Bsp1286I	GDGCHC	2 cut(s)	173, 267
Bsp143I	GATC	2 cut(s)	90, 189
BspACI	CCGC	9 cut(s)	24, 43, 46, 69, 183, 244, 300, 306, 312
BspANI	GGCC	3 cut(s)	182, 281, 323
BspCNI	CTCAG	1 cut(s)	156
BspFNI	CGCG	1 cut(s)	246
BspLI	GGNNCC	4 cut(s)	50, 199, 295, 310
BspPI	GGATC	2 cut(s)	98, 197
BspT107I	GGYRCC	2 cut(s)	197, 293
BsrBI	CCGCTC	2 cut(s)	43, 314
BsrFI	RCCGGY	3 cut(s)	140, 173, 302
BsrI	ACTGG	1 cut(s)	97
BssAI	RCCGGY	3 cut(s)	140, 173, 302
BssECI	CCNNGG	1 cut(s)	289
BssMI	GATC	2 cut(s)	90, 189
BssNI	GRCGYC	2 cut(s)	78, 138
Bst2UI	CCWGG	2 cut(s)	88, 187
BstACI	GRCGYC	2 cut(s)	78, 138
BstC8I	GCNNGC	7 cut(s)	7, 16, 122, 142, 248, 279, 304
BstDEI	CTNAG	2 cut(s)	54, 164
BstF5I	GGATG	2 cut(s)	210, 285
BstFNI	CGCG	1 cut(s)	246
BstKTI	GATC	2 cut(s)	93, 192
BstMAI	GTCTC	1 cut(s)	34
BstMBI	GATC	2 cut(s)	90, 189
BstMWI	GCNNNNNNNGC	5 cut(s)	11, 15, 75, 262, 320
BstNI	CCWGG	2 cut(s)	88, 187
BstSCI	CCNGG	3 cut(s)	36, 86, 185
BstUI	CGCG	1 cut(s)	246
BstV1I	GCAGC	3 cut(s)	147, 262, 265
BstX2I	RGATCY	2 cut(s)	90, 189
BstYI	RGATCY	2 cut(s)	90, 189
BsuRI	GGCC	3 cut(s)	182, 281, 323
BtgZI	GCGATG	1 cut(s)	67
BtsCI	GGATG	2 cut(s)	210, 285
Cac8I	GCNNGC	7 cut(s)	7, 16, 122, 142, 248, 279, 304
Cfr10I	RCCGGY	3 cut(s)	140, 173, 302
Cfr13I	GGNCC	1 cut(s)	241
CseI	GACGC	2 cut(s)	67, 146
DdeI	CTNAG	2 cut(s)	54, 164
DpnI	GATC	2 cut(s)	92, 191
DpnII	GATC	2 cut(s)	90, 189
EaeI	YGGCCR	1 cut(s)	321
EciI	GGCGGA	2 cut(s)	61, 289
Ecl136II	GAGCTC	1 cut(s)	265
Eco24I	GRGCYC	1 cut(s)	267
Eco47I	GGWCC	1 cut(s)	241
Eco53kI	GAGCTC	1 cut(s)	265
Eco88I	CYCGRG	2 cut(s)	114, 266
EcoICRI	GAGCTC	1 cut(s)	265
EcoRII	CCWGG	2 cut(s)	86, 185
EcoT38I	GRGCYC	1 cut(s)	267
FaqI	GGGAC	2 cut(s)	85, 206
Fnu4HI	GCNGC	7 cut(s)	44, 70, 161, 183, 251, 254, 307
FokI	GGATG	2 cut(s)	197, 272
FriOI	GRGCYC	1 cut(s)	267
Fsp4HI	GCNGC	7 cut(s)	44, 70, 161, 183, 251, 254, 307
GluI	GCNGC	7 cut(s)	44, 70, 161, 183, 251, 254, 307
HaeIII	GGCC	3 cut(s)	182, 281, 323
HapII	CCGG	5 cut(s)	38, 141, 174, 303, 320
HgaI	GACGC	2 cut(s)	67, 146
Hin1I	GRCGYC	2 cut(s)	78, 138
HpaII	CCGG	5 cut(s)	38, 141, 174, 303, 320
HphI	GGTGA	2 cut(s)	121, 250
Hpy188I	TCNGA	1 cut(s)	136
Hpy188III	TCNNGA	1 cut(s)	235
Hpy99I	CGWCG	3 cut(s)	77, 140, 152
HpyAV	CCTTC	2 cut(s)	52, 214
HpyCH4IV	ACGT	1 cut(s)	147
HpyF10VI	GCNNNNNNNGC	5 cut(s)	11, 15, 75, 262, 320
HpyF3I	CTNAG	2 cut(s)	54, 164
HpySE526I	ACGT	1 cut(s)	147
Hsp92I	GRCGYC	2 cut(s)	78, 138
KroI	GCCGGC	2 cut(s)	140, 302
KroNI	GCCGGC	2 cut(s)	142, 304
Kzo9I	GATC	2 cut(s)	90, 189
LmnI	GCTCC	4 cut(s)	40, 168, 314, 319
Lsp1109I	GCAGC	3 cut(s)	147, 262, 265
MaeII	ACGT	1 cut(s)	147
MaeIII	GTNAC	1 cut(s)	127
MalI	GATC	2 cut(s)	92, 191
MbiI	CCGCTC	2 cut(s)	43, 314
MboI	GATC	2 cut(s)	90, 189
MboII	GAAGA	1 cut(s)	184
MflI	RGATCY	2 cut(s)	90, 189
MhlI	GDGCHC	2 cut(s)	173, 267
MmeI	TCCRAC	1 cut(s)	159
MreI	CGCCGGCG	1 cut(s)	302
MroNI	GCCGGC	2 cut(s)	140, 302
MslI	CAYNNNNRTG	1 cut(s)	236
MspI	CCGG	5 cut(s)	38, 141, 174, 303, 320
MspR9I	CCNGG	3 cut(s)	38, 88, 187
MvaI	CCWGG	2 cut(s)	88, 187
MvnI	CGCG	1 cut(s)	246
MwoI	GCNNNNNNNGC	5 cut(s)	11, 15, 75, 262, 320
NaeI	GCCGGC	2 cut(s)	142, 304
NciI	CCSGG	1 cut(s)	38
NdeII	GATC	2 cut(s)	90, 189
NgoMIV	GCCGGC	2 cut(s)	140, 302
NlaIV	GGNNCC	4 cut(s)	50, 199, 295, 310
NmeAIII	GCCGAG	1 cut(s)	270
NmuCI	GTSAC	1 cut(s)	127
PaeR7I	CTCGAG	2 cut(s)	114, 266
PcsI	WCGNNNNNNNCGW	2 cut(s)	69, 144
PdiI	GCCGGC	2 cut(s)	142, 304
PflFI	GACNNNGTC	1 cut(s)	77
PfoI	TCCNGGA	1 cut(s)	36
PkrI	GCNGC	7 cut(s)	45, 71, 162, 184, 252, 255, 308
Psp124BI	GAGCTC	1 cut(s)	267
Psp6I	CCWGG	2 cut(s)	86, 185
PspGI	CCWGG	2 cut(s)	86, 185
PspN4I	GGNNCC	4 cut(s)	50, 199, 295, 310
PspPI	GGNCC	1 cut(s)	241
PspXI	VCTCGAGB	2 cut(s)	114, 266
PsuI	RGATCY	2 cut(s)	90, 189
PsyI	GACNNNGTC	1 cut(s)	77
RseI	CAYNNNNRTG	1 cut(s)	236
SacI	GAGCTC	1 cut(s)	267
SatI	GCNGC	7 cut(s)	44, 70, 161, 183, 251, 254, 307
Sau3AI	GATC	2 cut(s)	90, 189
Sau96I	GGNCC	1 cut(s)	241
ScrFI	CCNGG	3 cut(s)	38, 88, 187
SduI	GDGCHC	2 cut(s)	173, 267
SetI	ASST	8 cut(s)	16, 134, 150, 162, 206, 258, 267, 299
Sfr274I	CTCGAG	2 cut(s)	114, 266
SgrAI	CRCCGGYG	1 cut(s)	302
SinI	GGWCC	1 cut(s)	241
SlaI	CTCGAG	2 cut(s)	114, 266
SmiMI	CAYNNNNRTG	1 cut(s)	236
SmlI	CTYRAG	2 cut(s)	114, 266
SmoI	CTYRAG	2 cut(s)	114, 266
SsiI	CCGC	9 cut(s)	24, 43, 46, 69, 183, 244, 300, 306, 312
SstI	GAGCTC	1 cut(s)	267
StyD4I	CCNGG	3 cut(s)	36, 86, 185
TaiI	ACGT	1 cut(s)	150
TaqI	TCGA	3 cut(s)	115, 234, 267
TauI	GCSGC	4 cut(s)	46, 72, 185, 309
TseFI	GTSAC	1 cut(s)	127
TseI	GCWGC	3 cut(s)	160, 250, 253
Tsp45I	GTSAC	1 cut(s)	127
Tth111I	GACNNNGTC	1 cut(s)	77
VpaK11BI	GGWCC	1 cut(s)	241
XhoI	CTCGAG	2 cut(s)	114, 266

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.