Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0005799

Physical Location & Seq

Genomic Coordinates Forward (+)

11197983 .. 11198291

Gene Structure 309 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1060300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

ATGGCGGCCCAAGCTCGAAAAGGCGGAATCTCCCTCCCGGAACGGCGGAACCCTAAGAAGGAAGGCGACGGCGTGATCGCGAAGCTCGCGCAGTCCGAAATTGTCATTCGGGGAAAGCAAGCCGCAAACGACGCCGCATTTGTCACGAAGAAGCTCATGAAGAGCACCGGCAAGGCCGCCTGGATCGCCGGTACCTCGTTCCTCATACTGGTGGTGCCGTTGATCATCGCCATGGACCGCGAGCAGCAGCTCAACGAGCTCGAGCTCCAGCAGGCCAACATCCTGGGCGCTGCGCCGCCCCAGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005741 GO:0005742 GO:0005773 GO:0005774 GO:0006605 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0007006 GO:0008104 GO:0008150 GO:0008320 GO:0008565 GO:0009536 GO:0009987 GO:0015031 GO:0015399 GO:0015405 GO:0015450 GO:0015833 GO:0016020 GO:0016021 GO:0016043 GO:0017038 GO:0019867 GO:0022804 GO:0022857 GO:0022884 GO:0030150 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031306 GO:0031307 GO:0031966 GO:0031967 GO:0031968 GO:0031975 GO:0032592 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0042887 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044437 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0044743 GO:0045040 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0061024 GO:0065002 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072655 GO:0072657 GO:0090150 GO:0090151 GO:0098573 GO:0098588 GO:0098796 GO:0098798 GO:0098799 GO:0098805 GO:1904680 GO:1990542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tom22

Protein Analysis

103

Amino Acids

10.93

Weight (kDa)

9.99

Isoelectric Point (pI)

46.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Tom22	PF04281	41 - 92	2.4e-09	Mitochondrial import receptor subunit Tom22

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005799)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04070 AT5G43970
fragaria_vesca	FvH4_2g20580
malus_domestica	MD00G1060300.v1.1 MD13G1221200.v1.1 MD15G1267400.v1.1 MD15G1267500.v1.1
prunus_persica	Prupe.1G047800_v2.0.a1 Prupe.8G216100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0395371 RchiOBHm_Chr6g0286751
rosa_laevigata	RLG00000012545
rosa_multiflora	Rmu_sc0007546.1_g000010 Rmu_sc0036247.1_g000001
rosa_roxburghii	Rroxscaffold_7G00182040
rosa_rugosa	Rorug03G0358000 Rorug06G0182800
rosa_samantha	Rh4BG057800 Rh4CG063300 Rh4DG054400 Rh6AG295200 Rh6BG299100 Rh6CG299100 Rh6DG291000
rosa_wichuraiana	Rw0G003270 Rw0G007690 Rw4G004730 Rw6G025420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	191
AccB1I	GGYRCC	2 cut(s)	191, 214
AccII	CGCG	3 cut(s)	80, 89, 240
AciI	CCGC	8 cut(s)	5, 24, 46, 123, 135, 177, 238, 296
AclWI	GGATC	1 cut(s)	191
AcyI	GRCGYC	1 cut(s)	132
AfaI	GTAC	1 cut(s)	193
AfiI	CCNNNNNNNGG	2 cut(s)	58, 208
AjnI	CCWGG	2 cut(s)	179, 282
AluBI	AGCT	6 cut(s)	14, 85, 154, 250, 259, 265
AluI	AGCT	6 cut(s)	14, 85, 154, 250, 259, 265
Alw21I	GWGCWC	3 cut(s)	167, 261, 267
AlwI	GGATC	1 cut(s)	191
Ama87I	CYCGRG	1 cut(s)	260
AoxI	GGCC	3 cut(s)	6, 174, 273
ApeKI	GCWGC	3 cut(s)	244, 247, 290
ArsI	GACNNNNNNTTYG	2 cut(s)	122, 154
Asp718I	GGTACC	1 cut(s)	191
AspLEI	GCGC	3 cut(s)	91, 290, 295
AspS9I	GGNCC	2 cut(s)	7, 235
AsuC2I	CCSGG	1 cut(s)	38
AvaI	CYCGRG	1 cut(s)	260
AvaII	GGWCC	1 cut(s)	235
BanI	GGYRCC	2 cut(s)	191, 214
BanII	GRGCYC	2 cut(s)	261, 267
Bbv12I	GWGCWC	3 cut(s)	167, 261, 267
BbvI	GCAGC	3 cut(s)	256, 259, 277
BceAI	ACGGC	3 cut(s)	59, 85, 202
BciT130I	CCWGG	2 cut(s)	181, 284
BclI	TGATCA	1 cut(s)	222
BcnI	CCSGG	1 cut(s)	38
BfoI	RGCGCY	1 cut(s)	291
BisI	GCNGC	8 cut(s)	6, 123, 135, 177, 245, 248, 291, 296
BlsI	GCNGC	8 cut(s)	7, 124, 136, 178, 246, 249, 292, 297
Bme1390I	CCNGG	3 cut(s)	38, 181, 284
Bme18I	GGWCC	1 cut(s)	235
BmeT110I	CYCGRG	1 cut(s)	260
BmgT120I	GGNCC	2 cut(s)	7, 235
BmiI	GGNNCC	3 cut(s)	50, 193, 216
BmrFI	CCNGG	3 cut(s)	38, 181, 284
BpmI	CTGGAG	1 cut(s)	251
BpuMI	CCSGG	1 cut(s)	38
BsaHI	GRCGYC	1 cut(s)	132
BsaJI	CCNNGG	2 cut(s)	231, 283
Bsc4I	CCNNNNNNNGG	2 cut(s)	58, 208
Bse118I	RCCGGY	2 cut(s)	167, 188
Bse1I	ACTGG	1 cut(s)	213
BseBI	CCWGG	2 cut(s)	181, 284
BseDI	CCNNGG	2 cut(s)	231, 283
BseGI	GGATG	1 cut(s)	279
BseLI	CCNNNNNNNGG	2 cut(s)	58, 208
BseNI	ACTGG	1 cut(s)	213
BseXI	GCAGC	3 cut(s)	256, 259, 277
Bsh1236I	CGCG	3 cut(s)	80, 89, 240
BshFI	GGCC	3 cut(s)	8, 176, 275
BshNI	GGYRCC	2 cut(s)	191, 214
BsiHKAI	GWGCWC	3 cut(s)	167, 261, 267
BsiHKCI	CYCGRG	1 cut(s)	260
BsiSI	CCGG	3 cut(s)	38, 168, 189
BslI	CCNNNNNNNGG	2 cut(s)	58, 208
BsnI	GGCC	3 cut(s)	8, 176, 275
BsoBI	CYCGRG	1 cut(s)	260
Bsp1286I	GDGCHC	3 cut(s)	167, 261, 267
Bsp143I	GATC	3 cut(s)	75, 183, 222
Bsp19I	CCATGG	1 cut(s)	231
Bsp68I	TCGCGA	1 cut(s)	80
BspACI	CCGC	8 cut(s)	5, 24, 46, 123, 135, 177, 238, 296
BspANI	GGCC	3 cut(s)	8, 176, 275
BspFNI	CGCG	3 cut(s)	80, 89, 240
BspHI	TCATGA	1 cut(s)	156
BspLI	GGNNCC	3 cut(s)	50, 193, 216
BspPI	GGATC	1 cut(s)	191
BspQI	GCTCTTC	1 cut(s)	155
BspT107I	GGYRCC	2 cut(s)	191, 214
BsrFI	RCCGGY	2 cut(s)	167, 188
BsrI	ACTGG	1 cut(s)	213
BssAI	RCCGGY	2 cut(s)	167, 188
BssECI	CCNNGG	2 cut(s)	231, 283
BssMI	GATC	3 cut(s)	75, 183, 222
BssNI	GRCGYC	1 cut(s)	132
BssT1I	CCWWGG	1 cut(s)	231
Bst2UI	CCWGG	2 cut(s)	181, 284
Bst6I	CTCTTC	1 cut(s)	155
BstACI	GRCGYC	1 cut(s)	132
BstC8I	GCNNGC	4 cut(s)	87, 120, 242, 273
BstDEI	CTNAG	1 cut(s)	54
BstDSI	CCRYGG	1 cut(s)	231
BstF5I	GGATG	1 cut(s)	279
BstFNI	CGCG	3 cut(s)	80, 89, 240
BstH2I	RGCGCY	1 cut(s)	291
BstHHI	GCGC	3 cut(s)	91, 290, 295
BstKTI	GATC	3 cut(s)	78, 186, 225
BstMBI	GATC	3 cut(s)	75, 183, 222
BstMWI	GCNNNNNNNGC	5 cut(s)	11, 86, 131, 185, 256
BstNI	CCWGG	2 cut(s)	181, 284
BstSCI	CCNGG	3 cut(s)	36, 179, 282
BstUI	CGCG	3 cut(s)	80, 89, 240
BstV1I	GCAGC	3 cut(s)	256, 259, 277
BstXI	CCANNNNNNTGG	1 cut(s)	283
BsuRI	GGCC	3 cut(s)	8, 176, 275
BtgI	CCRYGG	1 cut(s)	231
BtgZI	GCGATG	1 cut(s)	211
BtsCI	GGATG	1 cut(s)	279
BtuMI	TCGCGA	1 cut(s)	80
Cac8I	GCNNGC	4 cut(s)	87, 120, 242, 273
CciI	TCATGA	1 cut(s)	156
CfoI	GCGC	3 cut(s)	91, 290, 295
Cfr10I	RCCGGY	2 cut(s)	167, 188
Cfr13I	GGNCC	2 cut(s)	7, 235
CseI	GACGC	1 cut(s)	140
Csp6I	GTAC	1 cut(s)	192
CviAII	CATG	2 cut(s)	157, 232
CviQI	GTAC	1 cut(s)	192
DdeI	CTNAG	1 cut(s)	54
DpnI	GATC	3 cut(s)	77, 185, 224
DpnII	GATC	3 cut(s)	75, 183, 222
Eam1104I	CTCTTC	1 cut(s)	155
EarI	CTCTTC	1 cut(s)	155
EciI	GGCGGA	2 cut(s)	39, 61
Ecl136II	GAGCTC	2 cut(s)	259, 265
Eco130I	CCWWGG	1 cut(s)	231
Eco24I	GRGCYC	2 cut(s)	261, 267
Eco47I	GGWCC	1 cut(s)	235
Eco53kI	GAGCTC	2 cut(s)	259, 265
Eco88I	CYCGRG	1 cut(s)	260
EcoICRI	GAGCTC	2 cut(s)	259, 265
EcoRII	CCWGG	2 cut(s)	179, 282
EcoT14I	CCWWGG	1 cut(s)	231
EcoT38I	GRGCYC	2 cut(s)	261, 267
ErhI	CCWWGG	1 cut(s)	231
FaeI	CATG	2 cut(s)	160, 235
FaiI	YATR	3 cut(s)	158, 206, 233
FatI	CATG	2 cut(s)	156, 231
FbaI	TGATCA	1 cut(s)	222
Fnu4HI	GCNGC	8 cut(s)	6, 123, 135, 177, 245, 248, 291, 296
FokI	GGATG	1 cut(s)	266
FriOI	GRGCYC	2 cut(s)	261, 267
Fsp4HI	GCNGC	8 cut(s)	6, 123, 135, 177, 245, 248, 291, 296
GlaI	GCGC	3 cut(s)	90, 289, 294
GluI	GCNGC	8 cut(s)	6, 123, 135, 177, 245, 248, 291, 296
GsuI	CTGGAG	1 cut(s)	251
HaeII	RGCGCY	1 cut(s)	291
HaeIII	GGCC	3 cut(s)	8, 176, 275
HapII	CCGG	3 cut(s)	38, 168, 189
HgaI	GACGC	1 cut(s)	140
HhaI	GCGC	3 cut(s)	91, 290, 295
Hin1I	GRCGYC	1 cut(s)	132
Hin1II	CATG	2 cut(s)	160, 235
Hin6I	GCGC	3 cut(s)	89, 288, 293
HinP1I	GCGC	3 cut(s)	89, 288, 293
HinfI	GANTC	1 cut(s)	27
HpaII	CCGG	3 cut(s)	38, 168, 189
Hpy188I	TCNGA	1 cut(s)	97
Hpy188III	TCNNGA	3 cut(s)	79, 145, 157
Hpy99I	CGWCG	2 cut(s)	71, 134
HpyAV	CCTTC	2 cut(s)	52, 56
HpyF10VI	GCNNNNNNNGC	5 cut(s)	11, 86, 131, 185, 256
HpyF3I	CTNAG	1 cut(s)	54
Hsp92I	GRCGYC	1 cut(s)	132
Hsp92II	CATG	2 cut(s)	160, 235
HspAI	GCGC	3 cut(s)	89, 288, 293
KpnI	GGTACC	1 cut(s)	195
Ksp22I	TGATCA	1 cut(s)	222
Kzo9I	GATC	3 cut(s)	75, 183, 222
LguI	GCTCTTC	1 cut(s)	155
LmnI	GCTCC	1 cut(s)	270
Lsp1109I	GCAGC	3 cut(s)	256, 259, 277
MaeIII	GTNAC	1 cut(s)	142
MalI	GATC	3 cut(s)	77, 185, 224
MboI	GATC	3 cut(s)	75, 183, 222
MboII	GAAGA	2 cut(s)	160, 172
MhlI	GDGCHC	3 cut(s)	167, 261, 267
MluCI	AATT	1 cut(s)	99
MnlI	CCTC	3 cut(s)	44, 205, 212
MslI	CAYNNNNRTG	2 cut(s)	209, 230
MspI	CCGG	3 cut(s)	38, 168, 189
MspR9I	CCNGG	3 cut(s)	38, 181, 284
MteI	GCGCNGCGC	1 cut(s)	291
MvaI	CCWGG	2 cut(s)	181, 284
MvnI	CGCG	3 cut(s)	80, 89, 240
MwoI	GCNNNNNNNGC	5 cut(s)	11, 86, 131, 185, 256
NciI	CCSGG	1 cut(s)	38
NcoI	CCATGG	1 cut(s)	231
NdeII	GATC	3 cut(s)	75, 183, 222
NlaIII	CATG	2 cut(s)	160, 235
NlaIV	GGNNCC	3 cut(s)	50, 193, 216
NmuCI	GTSAC	1 cut(s)	142
NruI	TCGCGA	1 cut(s)	80
PaeR7I	CTCGAG	1 cut(s)	260
PagI	TCATGA	1 cut(s)	156
PciSI	GCTCTTC	1 cut(s)	155
PcsI	WCGNNNNNNNCGW	1 cut(s)	93
PfeI	GAWTC	1 cut(s)	27
PfoI	TCCNGGA	1 cut(s)	36
PkrI	GCNGC	8 cut(s)	7, 124, 136, 178, 246, 249, 292, 297
Psp124BI	GAGCTC	2 cut(s)	261, 267
Psp6I	CCWGG	2 cut(s)	179, 282
PspGI	CCWGG	2 cut(s)	179, 282
PspN4I	GGNNCC	3 cut(s)	50, 193, 216
PspPI	GGNCC	2 cut(s)	7, 235
PspXI	VCTCGAGB	1 cut(s)	260
RruI	TCGCGA	1 cut(s)	80
RsaI	GTAC	1 cut(s)	193
RsaNI	GTAC	1 cut(s)	192
RseI	CAYNNNNRTG	2 cut(s)	209, 230
SacI	GAGCTC	2 cut(s)	261, 267
SapI	GCTCTTC	1 cut(s)	155
SatI	GCNGC	8 cut(s)	6, 123, 135, 177, 245, 248, 291, 296
Sau3AI	GATC	3 cut(s)	75, 183, 222
Sau96I	GGNCC	2 cut(s)	7, 235
ScrFI	CCNGG	3 cut(s)	38, 181, 284
SduI	GDGCHC	3 cut(s)	167, 261, 267
SetI	ASST	7 cut(s)	16, 87, 156, 197, 252, 261, 267
Sfr274I	CTCGAG	1 cut(s)	260
SinI	GGWCC	1 cut(s)	235
SlaI	CTCGAG	1 cut(s)	260
SmiMI	CAYNNNNRTG	2 cut(s)	209, 230
SmlI	CTYRAG	1 cut(s)	260
SmoI	CTYRAG	1 cut(s)	260
Sse9I	AATT	1 cut(s)	99
SsiI	CCGC	8 cut(s)	5, 24, 46, 123, 135, 177, 238, 296
SstI	GAGCTC	2 cut(s)	261, 267
StyD4I	CCNGG	3 cut(s)	36, 179, 282
StyI	CCWWGG	1 cut(s)	231
TaqI	TCGA	2 cut(s)	16, 261
TasI	AATT	1 cut(s)	99
TauI	GCSGC	5 cut(s)	8, 125, 137, 179, 298
TfiI	GAWTC	1 cut(s)	27
TseFI	GTSAC	1 cut(s)	142
TseI	GCWGC	3 cut(s)	244, 247, 290
Tsp45I	GTSAC	1 cut(s)	142
TspDTI	ATGAA	1 cut(s)	173
VpaK11BI	GGWCC	1 cut(s)	235
XhoI	CTCGAG	1 cut(s)	260

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.