Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0005799

Physical Location & Seq

Genomic Coordinates Reverse (-)

19755512 .. 19755829

Gene Structure 318 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000012545

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

ATGGCAAGCCCAGCTCGCAAAGGCGGAGTCTCCCTCCCGGAGCGGCGGAACCCTAAGAAGGACGACGGCGTCATCGCCAGGATCTCCCAGTCCCAAATCCTCGCTCGCGGCAAGCAAGTCACCTCCGACGCCGGCTACGTCGCCAAGAAGCTACTGAAGAGCACCGGCAAGGCCGCCTGGATCTTCGGCACCACCTTCCTCATCCTTGTCGTCCCTCTCATCATCGAGATGGACCGCGAGCAGCAGCTCACCGAGCTCGAGTTCCAGCAGGCCAACATCCTCGGTACCTCCGCCGGATCCGCTCCTCCGGCCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005741 GO:0005742 GO:0005773 GO:0005774 GO:0006605 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0007006 GO:0008104 GO:0008150 GO:0008320 GO:0008565 GO:0009536 GO:0009987 GO:0015031 GO:0015399 GO:0015405 GO:0015450 GO:0015833 GO:0016020 GO:0016021 GO:0016043 GO:0017038 GO:0019867 GO:0022804 GO:0022857 GO:0022884 GO:0030150 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031306 GO:0031307 GO:0031966 GO:0031967 GO:0031968 GO:0031975 GO:0032592 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0042887 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044437 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0044743 GO:0045040 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0061024 GO:0065002 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072655 GO:0072657 GO:0090150 GO:0090151 GO:0098573 GO:0098588 GO:0098796 GO:0098798 GO:0098799 GO:0098805 GO:1904680 GO:1990542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tom22

Protein Analysis

106

Amino Acids

11.28

Weight (kDa)

9.99

Isoelectric Point (pI)

57.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Tom22	PF04281	41 - 90	8.1e-08	Mitochondrial import receptor subunit Tom22

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005799)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04070 AT5G43970
fragaria_vesca	FvH4_2g20580
malus_domestica	MD00G1060300.v1.1 MD13G1221200.v1.1 MD15G1267400.v1.1 MD15G1267500.v1.1
prunus_persica	Prupe.1G047800_v2.0.a1 Prupe.8G216100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0395371 RchiOBHm_Chr6g0286751
rosa_laevigata	RLG00000012545
rosa_multiflora	Rmu_sc0007546.1_g000010 Rmu_sc0036247.1_g000001
rosa_roxburghii	Rroxscaffold_7G00182040
rosa_rugosa	Rorug03G0358000 Rorug06G0182800
rosa_samantha	Rh4BG057800 Rh4CG063300 Rh4DG054400 Rh6AG295200 Rh6BG299100 Rh6CG299100 Rh6DG291000
rosa_wichuraiana	Rw0G003270 Rw0G007690 Rw4G004730 Rw6G025420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	68
Acc65I	GGTACC	1 cut(s)	284
AccB1I	GGYRCC	2 cut(s)	188, 284
AccBSI	CCGCTC	2 cut(s)	43, 302
AccII	CGCG	2 cut(s)	108, 237
AciI	CCGC	8 cut(s)	24, 43, 46, 108, 174, 235, 291, 300
AclWI	GGATC	4 cut(s)	89, 188, 291, 304
AcoI	YGGCCR	1 cut(s)	309
AcuI	CTGAAG	1 cut(s)	176
AcyI	GRCGYC	2 cut(s)	69, 129
AfaI	GTAC	1 cut(s)	286
AfiI	CCNNNNNNNGG	1 cut(s)	58
AjnI	CCWGG	2 cut(s)	77, 176
AluBI	AGCT	4 cut(s)	14, 151, 247, 256
AluI	AGCT	4 cut(s)	14, 151, 247, 256
Alw21I	GWGCWC	2 cut(s)	164, 258
Alw26I	GTCTC	1 cut(s)	34
AlwI	GGATC	4 cut(s)	89, 188, 291, 304
Ama87I	CYCGRG	1 cut(s)	257
AoxI	GGCC	3 cut(s)	171, 270, 309
ApeKI	GCWGC	2 cut(s)	241, 244
ArsI	GACNNNNNNTTYG	2 cut(s)	12, 44
Asp718I	GGTACC	1 cut(s)	284
AspS9I	GGNCC	1 cut(s)	232
AsuC2I	CCSGG	1 cut(s)	38
AsuHPI	GGTGA	2 cut(s)	112, 241
AvaI	CYCGRG	1 cut(s)	257
AvaII	GGWCC	1 cut(s)	232
BamHI	GGATCC	1 cut(s)	296
BanI	GGYRCC	2 cut(s)	188, 284
BanII	GRGCYC	1 cut(s)	258
Bbv12I	GWGCWC	2 cut(s)	164, 258
BbvI	GCAGC	2 cut(s)	253, 256
BccI	CCATC	1 cut(s)	223
BceAI	ACGGC	1 cut(s)	82
BciT130I	CCWGG	2 cut(s)	79, 178
BcnI	CCSGG	1 cut(s)	38
BcoDI	GTCTC	1 cut(s)	34
BisI	GCNGC	5 cut(s)	44, 109, 174, 242, 245
BlsI	GCNGC	5 cut(s)	45, 110, 175, 243, 246
Bme1390I	CCNGG	3 cut(s)	38, 79, 178
Bme18I	GGWCC	1 cut(s)	232
BmeT110I	CYCGRG	1 cut(s)	257
BmgT120I	GGNCC	1 cut(s)	232
BmiI	GGNNCC	4 cut(s)	50, 190, 286, 298
BmrFI	CCNGG	3 cut(s)	38, 79, 178
BmrI	ACTGGG	1 cut(s)	82
BmuI	ACTGGG	1 cut(s)	82
BplI	GAGNNNNNCTC	2 cut(s)	18, 50
BpuMI	CCSGG	1 cut(s)	38
BsaHI	GRCGYC	2 cut(s)	69, 129
BsaJI	CCNNGG	1 cut(s)	280
Bsc4I	CCNNNNNNNGG	1 cut(s)	58
Bse118I	RCCGGY	2 cut(s)	131, 164
Bse1I	ACTGG	1 cut(s)	88
BseBI	CCWGG	2 cut(s)	79, 178
BseDI	CCNNGG	1 cut(s)	280
BseGI	GGATG	2 cut(s)	201, 276
BseLI	CCNNNNNNNGG	1 cut(s)	58
BseNI	ACTGG	1 cut(s)	88
BseRI	GAGGAG	1 cut(s)	294
BseXI	GCAGC	2 cut(s)	253, 256
BseYI	CCCAGC	1 cut(s)	10
Bsh1236I	CGCG	2 cut(s)	108, 237
BshFI	GGCC	3 cut(s)	173, 272, 311
BshNI	GGYRCC	2 cut(s)	188, 284
BsiHKAI	GWGCWC	2 cut(s)	164, 258
BsiHKCI	CYCGRG	1 cut(s)	257
BsiSI	CCGG	5 cut(s)	38, 132, 165, 294, 308
BslFI	GGGAC	2 cut(s)	76, 197
BslI	CCNNNNNNNGG	1 cut(s)	58
BsmAI	GTCTC	1 cut(s)	34
BsmFI	GGGAC	2 cut(s)	76, 197
BsnI	GGCC	3 cut(s)	173, 272, 311
BsoBI	CYCGRG	1 cut(s)	257
Bsp1286I	GDGCHC	2 cut(s)	164, 258
Bsp143I	GATC	3 cut(s)	81, 180, 296
BspACI	CCGC	8 cut(s)	24, 43, 46, 108, 174, 235, 291, 300
BspANI	GGCC	3 cut(s)	173, 272, 311
BspFNI	CGCG	2 cut(s)	108, 237
BspLI	GGNNCC	4 cut(s)	50, 190, 286, 298
BspPI	GGATC	4 cut(s)	89, 188, 291, 304
BspQI	GCTCTTC	1 cut(s)	152
BspT107I	GGYRCC	2 cut(s)	188, 284
BsrBI	CCGCTC	2 cut(s)	43, 302
BsrFI	RCCGGY	2 cut(s)	131, 164
BsrI	ACTGG	1 cut(s)	88
BssAI	RCCGGY	2 cut(s)	131, 164
BssECI	CCNNGG	1 cut(s)	280
BssMI	GATC	3 cut(s)	81, 180, 296
BssNI	GRCGYC	2 cut(s)	69, 129
Bst2UI	CCWGG	2 cut(s)	79, 178
Bst6I	CTCTTC	1 cut(s)	152
BstACI	GRCGYC	2 cut(s)	69, 129
BstC8I	GCNNGC	7 cut(s)	7, 16, 106, 113, 133, 239, 270
BstDEI	CTNAG	1 cut(s)	54
BstF5I	GGATG	2 cut(s)	201, 276
BstFNI	CGCG	2 cut(s)	108, 237
BstKTI	GATC	3 cut(s)	84, 183, 299
BstMAI	GTCTC	1 cut(s)	34
BstMBI	GATC	3 cut(s)	81, 180, 296
BstMWI	GCNNNNNNNGC	5 cut(s)	11, 15, 253, 299, 308
BstNI	CCWGG	2 cut(s)	79, 178
BstSCI	CCNGG	3 cut(s)	36, 77, 176
BstUI	CGCG	2 cut(s)	108, 237
BstV1I	GCAGC	2 cut(s)	253, 256
BstX2I	RGATCY	3 cut(s)	81, 180, 296
BstYI	RGATCY	3 cut(s)	81, 180, 296
BsuRI	GGCC	3 cut(s)	173, 272, 311
BtgZI	GCGATG	1 cut(s)	58
BtsCI	GGATG	2 cut(s)	201, 276
Cac8I	GCNNGC	7 cut(s)	7, 16, 106, 113, 133, 239, 270
Cfr10I	RCCGGY	2 cut(s)	131, 164
Cfr13I	GGNCC	1 cut(s)	232
CseI	GACGC	2 cut(s)	58, 137
Csp6I	GTAC	1 cut(s)	285
CviJI	RGCY	9 cut(s)	9, 14, 135, 151, 173, 247, 256, 272, 311
CviKI_1	RGCY	9 cut(s)	9, 14, 135, 151, 173, 247, 256, 272, 311
CviQI	GTAC	1 cut(s)	285
DdeI	CTNAG	1 cut(s)	54
DpnI	GATC	3 cut(s)	83, 182, 298
DpnII	GATC	3 cut(s)	81, 180, 296
DrdI	GACNNNNNNGTC	1 cut(s)	68
DseDI	GACNNNNNNGTC	1 cut(s)	68
EaeI	YGGCCR	1 cut(s)	309
Eam1104I	CTCTTC	1 cut(s)	152
EarI	CTCTTC	1 cut(s)	152
EciI	GGCGGA	3 cut(s)	39, 61, 280
Ecl136II	GAGCTC	1 cut(s)	256
Eco24I	GRGCYC	1 cut(s)	258
Eco47I	GGWCC	1 cut(s)	232
Eco53kI	GAGCTC	1 cut(s)	256
Eco57I	CTGAAG	1 cut(s)	176
Eco88I	CYCGRG	1 cut(s)	257
EcoICRI	GAGCTC	1 cut(s)	256
EcoRII	CCWGG	2 cut(s)	77, 176
EcoT38I	GRGCYC	1 cut(s)	258
FaqI	GGGAC	2 cut(s)	76, 197
Fnu4HI	GCNGC	5 cut(s)	44, 109, 174, 242, 245
FokI	GGATG	2 cut(s)	188, 263
FriOI	GRGCYC	1 cut(s)	258
Fsp4HI	GCNGC	5 cut(s)	44, 109, 174, 242, 245
GluI	GCNGC	5 cut(s)	44, 109, 174, 242, 245
GsaI	CCCAGC	1 cut(s)	14
HaeIII	GGCC	3 cut(s)	173, 272, 311
HapII	CCGG	5 cut(s)	38, 132, 165, 294, 308
HgaI	GACGC	2 cut(s)	58, 137
Hin1I	GRCGYC	2 cut(s)	69, 129
HinfI	GANTC	1 cut(s)	27
HpaII	CCGG	5 cut(s)	38, 132, 165, 294, 308
HphI	GGTGA	2 cut(s)	112, 241
Hpy188I	TCNGA	1 cut(s)	127
Hpy188III	TCNNGA	1 cut(s)	226
Hpy99I	CGWCG	3 cut(s)	68, 131, 143
HpyAV	CCTTC	2 cut(s)	52, 205
HpyCH4IV	ACGT	1 cut(s)	138
HpyF10VI	GCNNNNNNNGC	5 cut(s)	11, 15, 253, 299, 308
HpyF3I	CTNAG	1 cut(s)	54
HpySE526I	ACGT	1 cut(s)	138
Hsp92I	GRCGYC	2 cut(s)	69, 129
KpnI	GGTACC	1 cut(s)	288
KroI	GCCGGC	1 cut(s)	131
KroNI	GCCGGC	1 cut(s)	133
Kzo9I	GATC	3 cut(s)	81, 180, 296
LguI	GCTCTTC	1 cut(s)	152
LmnI	GCTCC	2 cut(s)	40, 307
Lsp1109I	GCAGC	2 cut(s)	253, 256
MaeII	ACGT	1 cut(s)	138
MaeIII	GTNAC	1 cut(s)	118
MalI	GATC	3 cut(s)	83, 182, 298
MbiI	CCGCTC	2 cut(s)	43, 302
MboI	GATC	3 cut(s)	81, 180, 296
MboII	GAAGA	2 cut(s)	169, 175
MflI	RGATCY	3 cut(s)	81, 180, 296
MhlI	GDGCHC	2 cut(s)	164, 258
MlyI	GAGTC	1 cut(s)	36
MmeI	TCCRAC	1 cut(s)	150
MnlI	CCTC	8 cut(s)	44, 110, 133, 209, 225, 290, 298, 315
MroNI	GCCGGC	1 cut(s)	131
MslI	CAYNNNNRTG	1 cut(s)	227
MspI	CCGG	5 cut(s)	38, 132, 165, 294, 308
MspR9I	CCNGG	3 cut(s)	38, 79, 178
MvaI	CCWGG	2 cut(s)	79, 178
MvnI	CGCG	2 cut(s)	108, 237
MwoI	GCNNNNNNNGC	5 cut(s)	11, 15, 253, 299, 308
NaeI	GCCGGC	1 cut(s)	133
NciI	CCSGG	1 cut(s)	38
NdeII	GATC	3 cut(s)	81, 180, 296
NgoMIV	GCCGGC	1 cut(s)	131
NlaIV	GGNNCC	4 cut(s)	50, 190, 286, 298
NmuCI	GTSAC	1 cut(s)	118
PaeR7I	CTCGAG	1 cut(s)	257
PciSI	GCTCTTC	1 cut(s)	152
PcsI	WCGNNNNNNNCGW	1 cut(s)	135
PdiI	GCCGGC	1 cut(s)	133
PflFI	GACNNNGTC	1 cut(s)	68
PfoI	TCCNGGA	1 cut(s)	36
PkrI	GCNGC	5 cut(s)	45, 110, 175, 243, 246
PleI	GAGTC	1 cut(s)	35
PpsI	GAGTC	1 cut(s)	35
Psp124BI	GAGCTC	1 cut(s)	258
Psp6I	CCWGG	2 cut(s)	77, 176
PspFI	CCCAGC	1 cut(s)	10
PspGI	CCWGG	2 cut(s)	77, 176
PspN4I	GGNNCC	4 cut(s)	50, 190, 286, 298
PspPI	GGNCC	1 cut(s)	232
PspXI	VCTCGAGB	1 cut(s)	257
PsuI	RGATCY	3 cut(s)	81, 180, 296
PsyI	GACNNNGTC	1 cut(s)	68
RsaI	GTAC	1 cut(s)	286
RsaNI	GTAC	1 cut(s)	285
RseI	CAYNNNNRTG	1 cut(s)	227
SacI	GAGCTC	1 cut(s)	258
SapI	GCTCTTC	1 cut(s)	152
SatI	GCNGC	5 cut(s)	44, 109, 174, 242, 245
Sau3AI	GATC	3 cut(s)	81, 180, 296
Sau96I	GGNCC	1 cut(s)	232
SchI	GAGTC	1 cut(s)	36
ScrFI	CCNGG	3 cut(s)	38, 79, 178
SduI	GDGCHC	2 cut(s)	164, 258
SetI	ASST	8 cut(s)	16, 125, 141, 153, 197, 249, 258, 290
Sfr274I	CTCGAG	1 cut(s)	257
SinI	GGWCC	1 cut(s)	232
SlaI	CTCGAG	1 cut(s)	257
SmiMI	CAYNNNNRTG	1 cut(s)	227
SmlI	CTYRAG	1 cut(s)	257
SmoI	CTYRAG	1 cut(s)	257
SsiI	CCGC	8 cut(s)	24, 43, 46, 108, 174, 235, 291, 300
SstI	GAGCTC	1 cut(s)	258
StyD4I	CCNGG	3 cut(s)	36, 77, 176
TaiI	ACGT	1 cut(s)	141
TaqI	TCGA	2 cut(s)	225, 258
TauI	GCSGC	3 cut(s)	46, 111, 176
TseFI	GTSAC	1 cut(s)	118
TseI	GCWGC	2 cut(s)	241, 244
Tsp45I	GTSAC	1 cut(s)	118
Tth111I	GACNNNGTC	1 cut(s)	68
VpaK11BI	GGWCC	1 cut(s)	232
XhoI	CTCGAG	1 cut(s)	257

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.