Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0005799

Physical Location & Seq

Genomic Coordinates Forward (+)

17253814 .. 17254990

Gene Structure 1177 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g20580.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 294 bp

ATGGCAACCCCAGCTCGCAAAGGCGGCATCTCCCTCCCGGAGCGGCGGAACCCTAAGAAGGACGACGGCGTCCTAACCAAGATCTCCCAGTCCACAATCGTCGCCAAGGGCAAGCAGTACAGTTCCGACACCATGTTCGTGACCAAGAAGCTGCTCAAGAGCACCGGCAAGGCCGCCTGGATCTTCGGCACCACCTTCCTCATCCTCGTCGTGCCTCTCATCATCGAGATGGACCGCGACCAGCAGCTCACCGAGCTCGAGCTCCAGCAGGCCAACATCCTCGGCACCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005741 GO:0005742 GO:0005773 GO:0005774 GO:0006605 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0007006 GO:0008104 GO:0008150 GO:0008320 GO:0008565 GO:0009536 GO:0009987 GO:0015031 GO:0015399 GO:0015405 GO:0015450 GO:0015833 GO:0016020 GO:0016021 GO:0016043 GO:0017038 GO:0019867 GO:0022804 GO:0022857 GO:0022884 GO:0030150 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031306 GO:0031307 GO:0031966 GO:0031967 GO:0031968 GO:0031975 GO:0032592 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0042887 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044437 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0044743 GO:0045040 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0061024 GO:0065002 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072655 GO:0072657 GO:0090150 GO:0090151 GO:0098573 GO:0098588 GO:0098796 GO:0098798 GO:0098799 GO:0098805 GO:1904680 GO:1990542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tom22

Protein Analysis

98

Amino Acids

10.72

Weight (kDa)

9.85

Isoelectric Point (pI)

47.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Tom22	PF04281	42 - 90	1.5e-07	Mitochondrial import receptor subunit Tom22

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005799)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04070 AT5G43970
fragaria_vesca	FvH4_2g20580
malus_domestica	MD00G1060300.v1.1 MD13G1221200.v1.1 MD15G1267400.v1.1 MD15G1267500.v1.1
prunus_persica	Prupe.1G047800_v2.0.a1 Prupe.8G216100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0395371 RchiOBHm_Chr6g0286751
rosa_laevigata	RLG00000012545
rosa_multiflora	Rmu_sc0007546.1_g000010 Rmu_sc0036247.1_g000001
rosa_roxburghii	Rroxscaffold_7G00182040
rosa_rugosa	Rorug03G0358000 Rorug06G0182800
rosa_samantha	Rh4BG057800 Rh4CG063300 Rh4DG054400 Rh6AG295200 Rh6BG299100 Rh6CG299100 Rh6DG291000
rosa_wichuraiana	Rw0G003270 Rw0G007690 Rw4G004730 Rw6G025420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	68
AccB1I	GGYRCC	2 cut(s)	188, 284
AccBSI	CCGCTC	1 cut(s)	43
AccII	CGCG	1 cut(s)	237
AciI	CCGC	5 cut(s)	24, 43, 46, 174, 235
AclWI	GGATC	1 cut(s)	188
AcyI	GRCGYC	1 cut(s)	69
AdeI	CACNNNGTG	1 cut(s)	291
AfaI	GTAC	1 cut(s)	119
AfiI	CCNNNNNNNGG	1 cut(s)	58
AjnI	CCWGG	1 cut(s)	176
AluBI	AGCT	5 cut(s)	14, 151, 247, 256, 262
AluI	AGCT	5 cut(s)	14, 151, 247, 256, 262
Alw21I	GWGCWC	3 cut(s)	164, 258, 264
AlwI	GGATC	1 cut(s)	188
Ama87I	CYCGRG	1 cut(s)	257
AoxI	GGCC	2 cut(s)	171, 270
ApeKI	GCWGC	2 cut(s)	151, 244
ArsI	GACNNNNNNTTYG	2 cut(s)	119, 151
AspS9I	GGNCC	1 cut(s)	232
AsuC2I	CCSGG	1 cut(s)	38
AsuHPI	GGTGA	1 cut(s)	241
AvaI	CYCGRG	1 cut(s)	257
AvaII	GGWCC	1 cut(s)	232
BanI	GGYRCC	2 cut(s)	188, 284
BanII	GRGCYC	2 cut(s)	258, 264
Bbv12I	GWGCWC	3 cut(s)	164, 258, 264
BbvI	GCAGC	2 cut(s)	138, 256
BccI	CCATC	1 cut(s)	223
BceAI	ACGGC	1 cut(s)	82
BciT130I	CCWGG	1 cut(s)	178
BcnI	CCSGG	1 cut(s)	38
BglII	AGATCT	1 cut(s)	81
BisI	GCNGC	5 cut(s)	25, 44, 152, 174, 245
BlsI	GCNGC	5 cut(s)	26, 45, 153, 175, 246
Bme1390I	CCNGG	2 cut(s)	38, 178
Bme18I	GGWCC	1 cut(s)	232
BmeT110I	CYCGRG	1 cut(s)	257
BmgT120I	GGNCC	1 cut(s)	232
BmiI	GGNNCC	3 cut(s)	50, 190, 286
BmrFI	CCNGG	2 cut(s)	38, 178
BmrI	ACTGGG	1 cut(s)	82
BmsI	GCATC	1 cut(s)	36
BmuI	ACTGGG	1 cut(s)	82
BpmI	CTGGAG	1 cut(s)	248
BpuEI	CTTGAG	1 cut(s)	140
BpuMI	CCSGG	1 cut(s)	38
BsaHI	GRCGYC	1 cut(s)	69
BsaJI	CCNNGG	2 cut(s)	105, 280
Bsc4I	CCNNNNNNNGG	1 cut(s)	58
Bse118I	RCCGGY	1 cut(s)	164
Bse1I	ACTGG	1 cut(s)	88
BseBI	CCWGG	1 cut(s)	178
BseDI	CCNNGG	2 cut(s)	105, 280
BseGI	GGATG	2 cut(s)	201, 276
BseLI	CCNNNNNNNGG	1 cut(s)	58
BseNI	ACTGG	1 cut(s)	88
BseXI	GCAGC	2 cut(s)	138, 256
BseYI	CCCAGC	1 cut(s)	10
Bsh1236I	CGCG	1 cut(s)	237
BshFI	GGCC	2 cut(s)	173, 272
BshNI	GGYRCC	2 cut(s)	188, 284
BsiHKAI	GWGCWC	3 cut(s)	164, 258, 264
BsiHKCI	CYCGRG	1 cut(s)	257
BsiSI	CCGG	2 cut(s)	38, 165
BslI	CCNNNNNNNGG	1 cut(s)	58
BsnI	GGCC	2 cut(s)	173, 272
BsoBI	CYCGRG	1 cut(s)	257
Bsp1286I	GDGCHC	3 cut(s)	164, 258, 264
Bsp143I	GATC	2 cut(s)	81, 180
BspACI	CCGC	5 cut(s)	24, 43, 46, 174, 235
BspANI	GGCC	2 cut(s)	173, 272
BspFNI	CGCG	1 cut(s)	237
BspLI	GGNNCC	3 cut(s)	50, 190, 286
BspPI	GGATC	1 cut(s)	188
BspT107I	GGYRCC	2 cut(s)	188, 284
BsrBI	CCGCTC	1 cut(s)	43
BsrFI	RCCGGY	1 cut(s)	164
BsrI	ACTGG	1 cut(s)	88
BssAI	RCCGGY	1 cut(s)	164
BssECI	CCNNGG	2 cut(s)	105, 280
BssMI	GATC	2 cut(s)	81, 180
BssNI	GRCGYC	1 cut(s)	69
BssT1I	CCWWGG	1 cut(s)	105
Bst2UI	CCWGG	1 cut(s)	178
Bst4CI	ACNGT	1 cut(s)	122
BstACI	GRCGYC	1 cut(s)	69
BstC8I	GCNNGC	3 cut(s)	16, 113, 270
BstDEI	CTNAG	1 cut(s)	54
BstF5I	GGATG	2 cut(s)	201, 276
BstFNI	CGCG	1 cut(s)	237
BstKTI	GATC	2 cut(s)	84, 183
BstMBI	GATC	2 cut(s)	81, 180
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 24, 253
BstNI	CCWGG	1 cut(s)	178
BstSCI	CCNGG	2 cut(s)	36, 176
BstUI	CGCG	1 cut(s)	237
BstV1I	GCAGC	2 cut(s)	138, 256
BstX2I	RGATCY	2 cut(s)	81, 180
BstYI	RGATCY	2 cut(s)	81, 180
BsuRI	GGCC	2 cut(s)	173, 272
BtsCI	GGATG	2 cut(s)	201, 276
Cac8I	GCNNGC	3 cut(s)	16, 113, 270
Cfr10I	RCCGGY	1 cut(s)	164
Cfr13I	GGNCC	1 cut(s)	232
CseI	GACGC	1 cut(s)	58
Csp6I	GTAC	1 cut(s)	118
CviAII	CATG	1 cut(s)	133
CviJI	RGCY	7 cut(s)	14, 151, 173, 247, 256, 262, 272
CviKI_1	RGCY	7 cut(s)	14, 151, 173, 247, 256, 262, 272
CviQI	GTAC	1 cut(s)	118
DdeI	CTNAG	1 cut(s)	54
DpnI	GATC	2 cut(s)	83, 182
DpnII	GATC	2 cut(s)	81, 180
DraIII	CACNNNGTG	1 cut(s)	291
DrdI	GACNNNNNNGTC	1 cut(s)	68
DseDI	GACNNNNNNGTC	1 cut(s)	68
EciI	GGCGGA	1 cut(s)	61
Ecl136II	GAGCTC	2 cut(s)	256, 262
Eco130I	CCWWGG	1 cut(s)	105
Eco24I	GRGCYC	2 cut(s)	258, 264
Eco47I	GGWCC	1 cut(s)	232
Eco53kI	GAGCTC	2 cut(s)	256, 262
Eco88I	CYCGRG	1 cut(s)	257
EcoICRI	GAGCTC	2 cut(s)	256, 262
EcoRII	CCWGG	1 cut(s)	176
EcoT14I	CCWWGG	1 cut(s)	105
EcoT38I	GRGCYC	2 cut(s)	258, 264
ErhI	CCWWGG	1 cut(s)	105
FaeI	CATG	1 cut(s)	136
FaiI	YATR	1 cut(s)	134
FatI	CATG	1 cut(s)	132
Fnu4HI	GCNGC	5 cut(s)	25, 44, 152, 174, 245
FokI	GGATG	2 cut(s)	188, 263
FriOI	GRGCYC	2 cut(s)	258, 264
Fsp4HI	GCNGC	5 cut(s)	25, 44, 152, 174, 245
GluI	GCNGC	5 cut(s)	25, 44, 152, 174, 245
GsaI	CCCAGC	1 cut(s)	14
GsuI	CTGGAG	1 cut(s)	248
HaeIII	GGCC	2 cut(s)	173, 272
HapII	CCGG	2 cut(s)	38, 165
HgaI	GACGC	1 cut(s)	58
Hin1I	GRCGYC	1 cut(s)	69
Hin1II	CATG	1 cut(s)	136
HpaII	CCGG	2 cut(s)	38, 165
HphI	GGTGA	1 cut(s)	241
Hpy166II	GTNNAC	1 cut(s)	93
Hpy188I	TCNGA	1 cut(s)	127
Hpy188III	TCNNGA	3 cut(s)	139, 157, 226
Hpy8I	GTNNAC	1 cut(s)	93
Hpy99I	CGWCG	3 cut(s)	68, 104, 212
HpyAV	CCTTC	2 cut(s)	52, 205
HpyCH4III	ACNGT	1 cut(s)	122
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 24, 253
HpyF3I	CTNAG	1 cut(s)	54
Hsp92I	GRCGYC	1 cut(s)	69
Hsp92II	CATG	1 cut(s)	136
Kzo9I	GATC	2 cut(s)	81, 180
LmnI	GCTCC	2 cut(s)	40, 267
LpnPI	CCDG	9 cut(s)	24, 51, 101, 163, 178, 190, 254, 254, 278
Lsp1109I	GCAGC	2 cut(s)	138, 256
LweI	GCATC	1 cut(s)	36
MaeIII	GTNAC	1 cut(s)	139
MalI	GATC	2 cut(s)	83, 182
MbiI	CCGCTC	1 cut(s)	43
MboI	GATC	2 cut(s)	81, 180
MboII	GAAGA	1 cut(s)	175
MflI	RGATCY	2 cut(s)	81, 180
MhlI	GDGCHC	3 cut(s)	164, 258, 264
MmeI	TCCRAC	1 cut(s)	150
MnlI	CCTC	5 cut(s)	44, 209, 215, 225, 290
MslI	CAYNNNNRTG	2 cut(s)	137, 227
MspI	CCGG	2 cut(s)	38, 165
MspR9I	CCNGG	2 cut(s)	38, 178
MvaI	CCWGG	1 cut(s)	178
MvnI	CGCG	1 cut(s)	237
MwoI	GCNNNNNNNGC	3 cut(s)	11, 24, 253
NciI	CCSGG	1 cut(s)	38
NdeII	GATC	2 cut(s)	81, 180
NlaIII	CATG	1 cut(s)	136
NlaIV	GGNNCC	3 cut(s)	50, 190, 286
NmeAIII	GCCGAG	1 cut(s)	261
NmuCI	GTSAC	1 cut(s)	139
PaeR7I	CTCGAG	1 cut(s)	257
PflFI	GACNNNGTC	1 cut(s)	68
PfoI	TCCNGGA	1 cut(s)	36
PkrI	GCNGC	5 cut(s)	26, 45, 153, 175, 246
Psp124BI	GAGCTC	2 cut(s)	258, 264
Psp6I	CCWGG	1 cut(s)	176
PspFI	CCCAGC	1 cut(s)	10
PspGI	CCWGG	1 cut(s)	176
PspN4I	GGNNCC	3 cut(s)	50, 190, 286
PspPI	GGNCC	1 cut(s)	232
PspXI	VCTCGAGB	1 cut(s)	257
PsuI	RGATCY	2 cut(s)	81, 180
PsyI	GACNNNGTC	1 cut(s)	68
RsaI	GTAC	1 cut(s)	119
RsaNI	GTAC	1 cut(s)	118
RseI	CAYNNNNRTG	2 cut(s)	137, 227
SacI	GAGCTC	2 cut(s)	258, 264
SatI	GCNGC	5 cut(s)	25, 44, 152, 174, 245
Sau3AI	GATC	2 cut(s)	81, 180
Sau96I	GGNCC	1 cut(s)	232
ScrFI	CCNGG	2 cut(s)	38, 178
SduI	GDGCHC	3 cut(s)	164, 258, 264
SetI	ASST	6 cut(s)	16, 153, 197, 249, 258, 264
SfaNI	GCATC	1 cut(s)	36
Sfr274I	CTCGAG	1 cut(s)	257
SinI	GGWCC	1 cut(s)	232
SlaI	CTCGAG	1 cut(s)	257
SmiMI	CAYNNNNRTG	2 cut(s)	137, 227
SmlI	CTYRAG	2 cut(s)	155, 257
SmoI	CTYRAG	2 cut(s)	155, 257
SsiI	CCGC	5 cut(s)	24, 43, 46, 174, 235
SstI	GAGCTC	2 cut(s)	258, 264
StyD4I	CCNGG	2 cut(s)	36, 176
StyI	CCWWGG	1 cut(s)	105
TaaI	ACNGT	1 cut(s)	122
TaqI	TCGA	2 cut(s)	225, 258
TatI	WGTACW	1 cut(s)	117
TauI	GCSGC	3 cut(s)	27, 46, 176
TseFI	GTSAC	1 cut(s)	139
TseI	GCWGC	2 cut(s)	151, 244
Tsp45I	GTSAC	1 cut(s)	139
Tth111I	GACNNNGTC	1 cut(s)	68
VpaK11BI	GGWCC	1 cut(s)	232
XhoI	CTCGAG	1 cut(s)	257

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.