Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005799

Physical Location & Seq

Genomic Coordinates Forward (+)

17692786 .. 17693481

Gene Structure 696 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G43970.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 300 bp

ATGGCGGCGAAGAGAATCGGAGCCGGTAAATCTGGCGGCGGAGATCCAAACATATTAGCGAGGATTTCAAACTCCGAGATCGTGTCCCAAGGAAGACGCGCAGCAGGAGATGCCGTCGAAGTATCGAAGAAACTGCTCCGGAGCACCGGAAAAGCAGCGTGGATCGCTGGGACAACTTTTCTCATACTTGTTGTTCCATTGATCATCGAGATGGATCGAGAGGCACAAATCAACGAAATTGAGCTTCAACAGGCCAGTCTCCTCGGAGCTCCACCATCTCCAATGCAAAGGGGATTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005741 GO:0005742 GO:0005773 GO:0005774 GO:0006605 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0007006 GO:0008104 GO:0008150 GO:0008320 GO:0008565 GO:0009536 GO:0009987 GO:0015031 GO:0015399 GO:0015405 GO:0015450 GO:0015833 GO:0016020 GO:0016021 GO:0016043 GO:0017038 GO:0019867 GO:0022804 GO:0022857 GO:0022884 GO:0030150 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031306 GO:0031307 GO:0031966 GO:0031967 GO:0031968 GO:0031975 GO:0032592 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0042887 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044437 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0044743 GO:0045040 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0061024 GO:0065002 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072655 GO:0072657 GO:0090150 GO:0090151 GO:0098573 GO:0098588 GO:0098796 GO:0098798 GO:0098799 GO:0098805 GO:1904680 GO:1990542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tom22

Protein Analysis

99

Amino Acids

10.38

Weight (kDa)

9.81

Isoelectric Point (pI)

62.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Tom22	PF04281	37 - 84	7.9e-07	Mitochondrial import receptor subunit Tom22

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005799)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04070 AT5G43970
fragaria_vesca	FvH4_2g20580
malus_domestica	MD00G1060300.v1.1 MD13G1221200.v1.1 MD15G1267400.v1.1 MD15G1267500.v1.1
prunus_persica	Prupe.1G047800_v2.0.a1 Prupe.8G216100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0395371 RchiOBHm_Chr6g0286751
rosa_laevigata	RLG00000012545
rosa_multiflora	Rmu_sc0007546.1_g000010 Rmu_sc0036247.1_g000001
rosa_roxburghii	Rroxscaffold_7G00182040
rosa_rugosa	Rorug03G0358000 Rorug06G0182800
rosa_samantha	Rh4BG057800 Rh4CG063300 Rh4DG054400 Rh6AG295200 Rh6BG299100 Rh6CG299100 Rh6DG291000
rosa_wichuraiana	Rw0G003270 Rw0G007690 Rw4G004730 Rw6G025420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	99
AccIII	TCCGGA	1 cut(s)	138
AciI	CCGC	3 cut(s)	5, 36, 39
AclWI	GGATC	3 cut(s)	38, 170, 222
AgsI	TTSAA	2 cut(s)	69, 248
AluBI	AGCT	2 cut(s)	244, 269
AluI	AGCT	2 cut(s)	244, 269
Alw21I	GWGCWC	2 cut(s)	146, 271
Alw26I	GTCTC	1 cut(s)	263
AlwI	GGATC	3 cut(s)	38, 170, 222
Aor13HI	TCCGGA	1 cut(s)	138
AoxI	GGCC	1 cut(s)	252
ApeKI	GCWGC	2 cut(s)	101, 155
AspLEI	GCGC	1 cut(s)	101
BanII	GRGCYC	1 cut(s)	271
BbsI	GAAGAC	1 cut(s)	100
Bbv12I	GWGCWC	2 cut(s)	146, 271
BbvI	GCAGC	2 cut(s)	113, 167
BccI	CCATC	2 cut(s)	205, 283
BceAI	ACGGC	1 cut(s)	98
BcgI	CGANNNNNNTGC	2 cut(s)	115, 149
BclI	TGATCA	1 cut(s)	201
BcoDI	GTCTC	1 cut(s)	263
BisI	GCNGC	4 cut(s)	6, 37, 102, 156
BlsI	GCNGC	4 cut(s)	7, 38, 103, 157
BmiI	GGNNCC	1 cut(s)	22
BmsI	GCATC	1 cut(s)	100
BpiI	GAAGAC	1 cut(s)	100
BsaJI	CCNNGG	2 cut(s)	88, 262
BsaWI	WCCGGW	2 cut(s)	138, 146
BsaXI	ACNNNNNCTCC	2 cut(s)	99, 129
Bse118I	RCCGGY	1 cut(s)	23
Bse1I	ACTGG	1 cut(s)	255
BseAI	TCCGGA	1 cut(s)	138
BseDI	CCNNGG	2 cut(s)	88, 262
BseNI	ACTGG	1 cut(s)	255
BseRI	GAGGAG	1 cut(s)	251
BseXI	GCAGC	2 cut(s)	113, 167
BseYI	CCCAGC	1 cut(s)	167
Bsh1236I	CGCG	1 cut(s)	99
BshFI	GGCC	1 cut(s)	254
BsiHKAI	GWGCWC	2 cut(s)	146, 271
BsiSI	CCGG	3 cut(s)	24, 139, 147
BslFI	GGGAC	2 cut(s)	70, 184
BsmAI	GTCTC	1 cut(s)	263
BsmFI	GGGAC	2 cut(s)	70, 184
BsnI	GGCC	1 cut(s)	254
Bsp1286I	GDGCHC	2 cut(s)	146, 271
Bsp13I	TCCGGA	1 cut(s)	138
Bsp143I	GATC	5 cut(s)	43, 78, 162, 201, 214
BspACI	CCGC	3 cut(s)	5, 36, 39
BspANI	GGCC	1 cut(s)	254
BspEI	TCCGGA	1 cut(s)	138
BspFNI	CGCG	1 cut(s)	99
BspLI	GGNNCC	1 cut(s)	22
BspPI	GGATC	3 cut(s)	38, 170, 222
BsrFI	RCCGGY	1 cut(s)	23
BsrI	ACTGG	1 cut(s)	255
BssAI	RCCGGY	1 cut(s)	23
BssECI	CCNNGG	2 cut(s)	88, 262
BssMI	GATC	5 cut(s)	43, 78, 162, 201, 214
BssT1I	CCWWGG	1 cut(s)	88
Bst6I	CTCTTC	1 cut(s)	5
BstAPI	GCANNNNNTGC	1 cut(s)	110
BstFNI	CGCG	1 cut(s)	99
BstHHI	GCGC	1 cut(s)	101
BstKTI	GATC	5 cut(s)	46, 81, 165, 204, 217
BstMAI	GTCTC	1 cut(s)	263
BstMBI	GATC	5 cut(s)	43, 78, 162, 201, 214
BstMWI	GCNNNNNNNGC	2 cut(s)	110, 164
BstUI	CGCG	1 cut(s)	99
BstV1I	GCAGC	2 cut(s)	113, 167
BstV2I	GAAGAC	1 cut(s)	100
BstX2I	RGATCY	1 cut(s)	43
BstYI	RGATCY	1 cut(s)	43
BsuRI	GGCC	1 cut(s)	254
CfoI	GCGC	1 cut(s)	101
Cfr10I	RCCGGY	1 cut(s)	23
CseI	GACGC	1 cut(s)	105
CviJI	RGCY	4 cut(s)	23, 244, 254, 269
CviKI_1	RGCY	4 cut(s)	23, 244, 254, 269
DpnI	GATC	5 cut(s)	45, 80, 164, 203, 216
DpnII	GATC	5 cut(s)	43, 78, 162, 201, 214
Eam1104I	CTCTTC	1 cut(s)	5
EarI	CTCTTC	1 cut(s)	5
EciI	GGCGGA	1 cut(s)	54
Ecl136II	GAGCTC	1 cut(s)	269
Eco130I	CCWWGG	1 cut(s)	88
Eco24I	GRGCYC	1 cut(s)	271
Eco53kI	GAGCTC	1 cut(s)	269
EcoICRI	GAGCTC	1 cut(s)	269
EcoT14I	CCWWGG	1 cut(s)	88
EcoT38I	GRGCYC	1 cut(s)	271
ErhI	CCWWGG	1 cut(s)	88
FaiI	YATR	2 cut(s)	53, 185
FaqI	GGGAC	2 cut(s)	70, 184
FbaI	TGATCA	1 cut(s)	201
Fnu4HI	GCNGC	4 cut(s)	6, 37, 102, 156
FriOI	GRGCYC	1 cut(s)	271
Fsp4HI	GCNGC	4 cut(s)	6, 37, 102, 156
GlaI	GCGC	1 cut(s)	100
GluI	GCNGC	4 cut(s)	6, 37, 102, 156
GsaI	CCCAGC	1 cut(s)	171
HaeIII	GGCC	1 cut(s)	254
HapII	CCGG	3 cut(s)	24, 139, 147
HgaI	GACGC	1 cut(s)	105
HhaI	GCGC	1 cut(s)	101
Hin6I	GCGC	1 cut(s)	99
HinP1I	GCGC	1 cut(s)	99
HinfI	GANTC	1 cut(s)	15
HpaII	CCGG	3 cut(s)	24, 139, 147
Hpy188I	TCNGA	3 cut(s)	20, 76, 266
Hpy188III	TCNNGA	3 cut(s)	139, 208, 218
Hpy99I	CGWCG	1 cut(s)	119
HpyCH4V	TGCA	1 cut(s)	286
HpyF10VI	GCNNNNNNNGC	2 cut(s)	110, 164
HspAI	GCGC	1 cut(s)	99
Kpn2I	TCCGGA	1 cut(s)	138
Ksp22I	TGATCA	1 cut(s)	201
Kzo9I	GATC	5 cut(s)	43, 78, 162, 201, 214
LmnI	GCTCC	5 cut(s)	20, 141, 141, 266, 274
LpnPI	CCDG	8 cut(s)	18, 37, 90, 152, 153, 160, 236, 268
Lsp1109I	GCAGC	2 cut(s)	113, 167
LweI	GCATC	1 cut(s)	100
MalI	GATC	5 cut(s)	45, 80, 164, 203, 216
MboI	GATC	5 cut(s)	43, 78, 162, 201, 214
MboII	GAAGA	3 cut(s)	22, 105, 139
MflI	RGATCY	1 cut(s)	43
MhlI	GDGCHC	2 cut(s)	146, 271
MluCI	AATT	1 cut(s)	237
MnlI	CCTC	3 cut(s)	54, 214, 272
MroI	TCCGGA	1 cut(s)	138
MslI	CAYNNNNRTG	1 cut(s)	209
MspI	CCGG	3 cut(s)	24, 139, 147
MvnI	CGCG	1 cut(s)	99
MwoI	GCNNNNNNNGC	2 cut(s)	110, 164
NdeII	GATC	5 cut(s)	43, 78, 162, 201, 214
NlaIV	GGNNCC	1 cut(s)	22
PfeI	GAWTC	1 cut(s)	15
PkrI	GCNGC	4 cut(s)	7, 38, 103, 157
Psp124BI	GAGCTC	1 cut(s)	271
PspFI	CCCAGC	1 cut(s)	167
PspN4I	GGNNCC	1 cut(s)	22
PsuI	RGATCY	1 cut(s)	43
RseI	CAYNNNNRTG	1 cut(s)	209
SacI	GAGCTC	1 cut(s)	271
SatI	GCNGC	4 cut(s)	6, 37, 102, 156
Sau3AI	GATC	5 cut(s)	43, 78, 162, 201, 214
SduI	GDGCHC	2 cut(s)	146, 271
SetI	ASST	2 cut(s)	246, 271
SfaNI	GCATC	1 cut(s)	100
SmiMI	CAYNNNNRTG	1 cut(s)	209
Sse9I	AATT	1 cut(s)	237
SsiI	CCGC	3 cut(s)	5, 36, 39
SstI	GAGCTC	1 cut(s)	271
StyI	CCWWGG	1 cut(s)	88
TaqI	TCGA	4 cut(s)	117, 125, 207, 217
TasI	AATT	1 cut(s)	237
TauI	GCSGC	2 cut(s)	8, 39
TfiI	GAWTC	1 cut(s)	15
TseI	GCWGC	2 cut(s)	101, 155

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.