Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0005799

Physical Location & Seq

Genomic Coordinates Forward (+)

23000517 .. 23000798

Gene Structure 282 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1267500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 282 bp

ATGAGATGTAAACAACCCAGATTCAGCTCGAAAAGGGGGGCACAAGCTCGAAAATGTGGAATCTCTCTCCCCGAGCGGAGGAACCCTAAGAAGGAAGACAATGACGTGATCGCGAGGCTTGCACAGTCCCAAATTATCGTTTGGGGCAAGCAGGCCGTAAACGACGTCGCATCTATCATGAAGAAGCTCATGAAGAGCACTGGAAAAGCCGTATGGATCGCCGACACCTCTTTCCTTATACTGGTGGTGCCTTTGATCATAGCCATGGACAGTGAGCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005741 GO:0005742 GO:0005773 GO:0005774 GO:0006605 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0007006 GO:0008104 GO:0008150 GO:0008320 GO:0008565 GO:0009536 GO:0009987 GO:0015031 GO:0015399 GO:0015405 GO:0015450 GO:0015833 GO:0016020 GO:0016021 GO:0016043 GO:0017038 GO:0019867 GO:0022804 GO:0022857 GO:0022884 GO:0030150 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031306 GO:0031307 GO:0031966 GO:0031967 GO:0031968 GO:0031975 GO:0032592 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0042887 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044437 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0044743 GO:0045040 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0061024 GO:0065002 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072655 GO:0072657 GO:0090150 GO:0090151 GO:0098573 GO:0098588 GO:0098796 GO:0098798 GO:0098799 GO:0098805 GO:1904680 GO:1990542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tom22

Protein Analysis

94

Amino Acids

10.41

Weight (kDa)

10.18

Isoelectric Point (pI)

40.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Tom22	PF04281	51 - 93	4.6e-07	Mitochondrial import receptor subunit Tom22

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005799)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04070 AT5G43970
fragaria_vesca	FvH4_2g20580
malus_domestica	MD00G1060300.v1.1 MD13G1221200.v1.1 MD15G1267400.v1.1 MD15G1267500.v1.1
prunus_persica	Prupe.1G047800_v2.0.a1 Prupe.8G216100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0395371 RchiOBHm_Chr6g0286751
rosa_laevigata	RLG00000012545
rosa_multiflora	Rmu_sc0007546.1_g000010 Rmu_sc0036247.1_g000001
rosa_roxburghii	Rroxscaffold_7G00182040
rosa_rugosa	Rorug03G0358000 Rorug06G0182800
rosa_samantha	Rh4BG057800 Rh4CG063300 Rh4DG054400 Rh6AG295200 Rh6BG299100 Rh6CG299100 Rh6DG291000
rosa_wichuraiana	Rw0G003270 Rw0G007690 Rw4G004730 Rw6G025420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	168
AccB1I	GGYRCC	1 cut(s)	247
AccBSI	CCGCTC	1 cut(s)	76
AccII	CGCG	1 cut(s)	113
AciI	CCGC	1 cut(s)	76
AclWI	GGATC	1 cut(s)	224
AcyI	GRCGYC	1 cut(s)	165
AfiI	CCNNNNNNNGG	3 cut(s)	78, 91, 241
AjiI	CACGTC	1 cut(s)	106
AluBI	AGCT	3 cut(s)	27, 47, 187
AluI	AGCT	3 cut(s)	27, 47, 187
Alw21I	GWGCWC	1 cut(s)	200
AlwI	GGATC	1 cut(s)	224
Ama87I	CYCGRG	1 cut(s)	71
AoxI	GGCC	1 cut(s)	153
AvaI	CYCGRG	1 cut(s)	71
BaeGI	GKGCMC	1 cut(s)	43
BanI	GGYRCC	1 cut(s)	247
BbsI	GAAGAC	1 cut(s)	102
Bbv12I	GWGCWC	1 cut(s)	200
BceAI	ACGGC	2 cut(s)	140, 194
BclI	TGATCA	1 cut(s)	255
BmeT110I	CYCGRG	1 cut(s)	71
BmgBI	CACGTC	1 cut(s)	106
BmiI	GGNNCC	2 cut(s)	83, 249
BmsI	GCATC	1 cut(s)	179
BpiI	GAAGAC	1 cut(s)	102
BsaHI	GRCGYC	1 cut(s)	165
BsaJI	CCNNGG	1 cut(s)	264
Bsc4I	CCNNNNNNNGG	3 cut(s)	78, 91, 241
Bse1I	ACTGG	2 cut(s)	205, 246
BseDI	CCNNGG	1 cut(s)	264
BseLI	CCNNNNNNNGG	3 cut(s)	78, 91, 241
BseNI	ACTGG	2 cut(s)	205, 246
BseSI	GKGCMC	1 cut(s)	43
Bsh1236I	CGCG	1 cut(s)	113
BshFI	GGCC	1 cut(s)	155
BshNI	GGYRCC	1 cut(s)	247
BsiHKAI	GWGCWC	1 cut(s)	200
BsiHKCI	CYCGRG	1 cut(s)	71
BslFI	GGGAC	1 cut(s)	112
BslI	CCNNNNNNNGG	3 cut(s)	78, 91, 241
BsmFI	GGGAC	1 cut(s)	112
BsnI	GGCC	1 cut(s)	155
BsoBI	CYCGRG	1 cut(s)	71
Bsp1286I	GDGCHC	2 cut(s)	43, 200
Bsp143I	GATC	3 cut(s)	108, 216, 255
Bsp19I	CCATGG	1 cut(s)	264
Bsp68I	TCGCGA	1 cut(s)	113
BspACI	CCGC	1 cut(s)	76
BspANI	GGCC	1 cut(s)	155
BspFNI	CGCG	1 cut(s)	113
BspHI	TCATGA	2 cut(s)	177, 189
BspLI	GGNNCC	2 cut(s)	83, 249
BspPI	GGATC	1 cut(s)	224
BspQI	GCTCTTC	1 cut(s)	188
BspT107I	GGYRCC	1 cut(s)	247
BsrBI	CCGCTC	1 cut(s)	76
BsrI	ACTGG	2 cut(s)	205, 246
BssECI	CCNNGG	1 cut(s)	264
BssMI	GATC	3 cut(s)	108, 216, 255
BssNI	GRCGYC	1 cut(s)	165
BssT1I	CCWWGG	1 cut(s)	264
Bst4CI	ACNGT	2 cut(s)	126, 272
Bst6I	CTCTTC	1 cut(s)	188
BstACI	GRCGYC	1 cut(s)	165
BstC8I	GCNNGC	3 cut(s)	120, 149, 153
BstDEI	CTNAG	1 cut(s)	87
BstDSI	CCRYGG	1 cut(s)	264
BstFNI	CGCG	1 cut(s)	113
BstKTI	GATC	3 cut(s)	111, 219, 258
BstMBI	GATC	3 cut(s)	108, 216, 255
BstMWI	GCNNNNNNNGC	1 cut(s)	119
BstSLI	GKGCMC	1 cut(s)	43
BstUI	CGCG	1 cut(s)	113
BstV2I	GAAGAC	1 cut(s)	102
BsuRI	GGCC	1 cut(s)	155
BtgI	CCRYGG	1 cut(s)	264
BtrI	CACGTC	1 cut(s)	106
BtsIMutI	CAGTG	2 cut(s)	198, 277
BtuMI	TCGCGA	1 cut(s)	113
Cac8I	GCNNGC	3 cut(s)	120, 149, 153
CciI	TCATGA	2 cut(s)	177, 189
CviAII	CATG	3 cut(s)	178, 190, 265
CviJI	RGCY	7 cut(s)	27, 47, 118, 155, 187, 209, 263
CviKI_1	RGCY	7 cut(s)	27, 47, 118, 155, 187, 209, 263
DdeI	CTNAG	1 cut(s)	87
DpnI	GATC	3 cut(s)	110, 218, 257
DpnII	GATC	3 cut(s)	108, 216, 255
Eam1104I	CTCTTC	1 cut(s)	188
EarI	CTCTTC	1 cut(s)	188
Eco130I	CCWWGG	1 cut(s)	264
Eco88I	CYCGRG	1 cut(s)	71
EcoT14I	CCWWGG	1 cut(s)	264
ErhI	CCWWGG	1 cut(s)	264
FaeI	CATG	3 cut(s)	181, 193, 268
FaiI	YATR	6 cut(s)	179, 191, 214, 239, 260, 266
FaqI	GGGAC	1 cut(s)	112
FatI	CATG	3 cut(s)	177, 189, 264
FbaI	TGATCA	1 cut(s)	255
HaeIII	GGCC	1 cut(s)	155
Hin1I	GRCGYC	1 cut(s)	165
Hin1II	CATG	3 cut(s)	181, 193, 268
HinfI	GANTC	2 cut(s)	21, 60
Hpy166II	GTNNAC	2 cut(s)	11, 160
Hpy188III	TCNNGA	3 cut(s)	112, 178, 190
Hpy8I	GTNNAC	2 cut(s)	11, 160
Hpy99I	CGWCG	2 cut(s)	167, 170
HpyAV	CCTTC	1 cut(s)	85
HpyCH4III	ACNGT	2 cut(s)	126, 272
HpyCH4IV	ACGT	2 cut(s)	105, 165
HpyCH4V	TGCA	1 cut(s)	122
HpyF10VI	GCNNNNNNNGC	1 cut(s)	119
HpyF3I	CTNAG	1 cut(s)	87
HpySE526I	ACGT	2 cut(s)	105, 165
Hsp92I	GRCGYC	1 cut(s)	165
Hsp92II	CATG	3 cut(s)	181, 193, 268
Ksp22I	TGATCA	1 cut(s)	255
Kzo9I	GATC	3 cut(s)	108, 216, 255
LguI	GCTCTTC	1 cut(s)	188
LpnPI	CCDG	4 cut(s)	31, 137, 186, 227
LweI	GCATC	1 cut(s)	179
MaeII	ACGT	2 cut(s)	105, 165
MalI	GATC	3 cut(s)	110, 218, 257
MbiI	CCGCTC	1 cut(s)	76
MboI	GATC	3 cut(s)	108, 216, 255
MboII	GAAGA	3 cut(s)	107, 193, 205
MhlI	GDGCHC	2 cut(s)	43, 200
MluCI	AATT	1 cut(s)	132
MnlI	CCTC	3 cut(s)	72, 108, 238
MslI	CAYNNNNRTG	1 cut(s)	263
MvnI	CGCG	1 cut(s)	113
MwoI	GCNNNNNNNGC	1 cut(s)	119
NcoI	CCATGG	1 cut(s)	264
NdeII	GATC	3 cut(s)	108, 216, 255
NlaIII	CATG	3 cut(s)	181, 193, 268
NlaIV	GGNNCC	2 cut(s)	83, 249
NruI	TCGCGA	1 cut(s)	113
PagI	TCATGA	2 cut(s)	177, 189
PciSI	GCTCTTC	1 cut(s)	188
PfeI	GAWTC	2 cut(s)	21, 60
PspN4I	GGNNCC	2 cut(s)	83, 249
RruI	TCGCGA	1 cut(s)	113
RseI	CAYNNNNRTG	1 cut(s)	263
SapI	GCTCTTC	1 cut(s)	188
Sau3AI	GATC	3 cut(s)	108, 216, 255
SduI	GDGCHC	2 cut(s)	43, 200
SetI	ASST	6 cut(s)	29, 49, 108, 168, 189, 230
SfaNI	GCATC	1 cut(s)	179
SmiMI	CAYNNNNRTG	1 cut(s)	263
Sse9I	AATT	1 cut(s)	132
SsiI	CCGC	1 cut(s)	76
StyI	CCWWGG	1 cut(s)	264
TaaI	ACNGT	2 cut(s)	126, 272
TaiI	ACGT	2 cut(s)	108, 168
TaqI	TCGA	2 cut(s)	29, 49
TasI	AATT	1 cut(s)	132
TfiI	GAWTC	2 cut(s)	21, 60
TscAI	CASTG	2 cut(s)	205, 277
TspDTI	ATGAA	2 cut(s)	194, 206
TspRI	CASTG	2 cut(s)	205, 277
ZraI	GACGTC	1 cut(s)	166

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.