Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0005799

Physical Location & Seq

Genomic Coordinates Forward (+)

22985161 .. 22985535

Gene Structure 375 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1267400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

ATGGGATGTAAACAACCTAGCTTCAGCTCGAAAAATGGGGCCCAAGCTCGAAAAGGCGGAATCTCCCTCCTCAAGCGAAGGAACCCTAAGAAGGAAGACGATGGAGTGATTGCAAGGCTCGCACAGTCCCAAATTATCGTTCGGGGCAAGCAGGCCGCAAACGACGCTGCATCTATCACGAAGAAGCTCATGAAGAGCACCAGAAAGGTCGTCTGGATCGCCGACACCTCTTTCCTCATACTGGTGGTGCCTTTAATCATAGCCATGGACTGCGATCAGCAGCTAAATGAGGCTCTTATCTCCAGCAGGCTAACATCCTCGGCGCAGCGCCGCCCCAGAAACAAGTCAAGCCGGGTCGGGTCGGGTCGAGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005741 GO:0005742 GO:0005773 GO:0005774 GO:0006605 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0007006 GO:0008104 GO:0008150 GO:0008320 GO:0008565 GO:0009536 GO:0009987 GO:0015031 GO:0015399 GO:0015405 GO:0015450 GO:0015833 GO:0016020 GO:0016021 GO:0016043 GO:0017038 GO:0019867 GO:0022804 GO:0022857 GO:0022884 GO:0030150 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031306 GO:0031307 GO:0031966 GO:0031967 GO:0031968 GO:0031975 GO:0032592 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0042887 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044437 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0044743 GO:0045040 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0061024 GO:0065002 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072655 GO:0072657 GO:0090150 GO:0090151 GO:0098573 GO:0098588 GO:0098796 GO:0098798 GO:0098799 GO:0098805 GO:1904680 GO:1990542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tom22

Protein Analysis

125

Amino Acids

13.52

Weight (kDa)

11.22

Isoelectric Point (pI)

46.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Tom22	PF04281	51 - 98	3.4e-06	Mitochondrial import receptor subunit Tom22

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005799)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04070 AT5G43970
fragaria_vesca	FvH4_2g20580
malus_domestica	MD00G1060300.v1.1 MD13G1221200.v1.1 MD15G1267400.v1.1 MD15G1267500.v1.1
prunus_persica	Prupe.1G047800_v2.0.a1 Prupe.8G216100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0395371 RchiOBHm_Chr6g0286751
rosa_laevigata	RLG00000012545
rosa_multiflora	Rmu_sc0007546.1_g000010 Rmu_sc0036247.1_g000001
rosa_roxburghii	Rroxscaffold_7G00182040
rosa_rugosa	Rorug03G0358000 Rorug06G0182800
rosa_samantha	Rh4BG057800 Rh4CG063300 Rh4DG054400 Rh6AG295200 Rh6BG299100 Rh6CG299100 Rh6DG291000
rosa_wichuraiana	Rw0G003270 Rw0G007690 Rw4G004730 Rw6G025420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	247
AciI	CCGC	3 cut(s)	57, 156, 331
AclWI	GGATC	1 cut(s)	224
AcuI	CTGAAG	1 cut(s)	7
AfiI	CCNNNNNNNGG	2 cut(s)	91, 241
AjuI	GAANNNNNNNTTGG	2 cut(s)	123, 155
AluBI	AGCT	5 cut(s)	21, 27, 47, 187, 283
AluI	AGCT	5 cut(s)	21, 27, 47, 187, 283
Alw21I	GWGCWC	1 cut(s)	200
AlwI	GGATC	1 cut(s)	224
AoxI	GGCC	2 cut(s)	39, 153
ApaI	GGGCCC	1 cut(s)	43
ApeKI	GCWGC	3 cut(s)	167, 280, 325
AspLEI	GCGC	2 cut(s)	325, 330
AspS9I	GGNCC	2 cut(s)	39, 40
AsuC2I	CCSGG	1 cut(s)	353
BaeGI	GKGCMC	1 cut(s)	43
BanI	GGYRCC	1 cut(s)	247
BanII	GRGCYC	1 cut(s)	43
BbsI	GAAGAC	1 cut(s)	102
Bbv12I	GWGCWC	1 cut(s)	200
BbvI	GCAGC	3 cut(s)	154, 292, 337
BccI	CCATC	1 cut(s)	95
BcnI	CCSGG	1 cut(s)	353
BfaI	CTAG	1 cut(s)	18
BfoI	RGCGCY	1 cut(s)	331
BisI	GCNGC	5 cut(s)	156, 168, 281, 326, 331
BlsI	GCNGC	5 cut(s)	157, 169, 282, 327, 332
Bme1390I	CCNGG	1 cut(s)	353
BmgT120I	GGNCC	2 cut(s)	39, 40
BmiI	GGNNCC	4 cut(s)	40, 41, 83, 249
BmrFI	CCNGG	1 cut(s)	353
BmsI	GCATC	1 cut(s)	179
BpiI	GAAGAC	1 cut(s)	102
BpmI	CTGGAG	1 cut(s)	286
BpuEI	CTTGAG	1 cut(s)	56
BpuMI	CCSGG	1 cut(s)	353
BsaJI	CCNNGG	2 cut(s)	264, 318
Bsc4I	CCNNNNNNNGG	2 cut(s)	91, 241
Bse1I	ACTGG	1 cut(s)	246
BseDI	CCNNGG	2 cut(s)	264, 318
BseGI	GGATG	2 cut(s)	11, 314
BseLI	CCNNNNNNNGG	2 cut(s)	91, 241
BseNI	ACTGG	1 cut(s)	246
BseRI	GAGGAG	1 cut(s)	59
BseSI	GKGCMC	1 cut(s)	43
BseXI	GCAGC	3 cut(s)	154, 292, 337
BshFI	GGCC	2 cut(s)	41, 155
BshNI	GGYRCC	1 cut(s)	247
BsiHKAI	GWGCWC	1 cut(s)	200
BsiSI	CCGG	1 cut(s)	352
BslFI	GGGAC	1 cut(s)	112
BslI	CCNNNNNNNGG	2 cut(s)	91, 241
BsmFI	GGGAC	1 cut(s)	112
BsnI	GGCC	2 cut(s)	41, 155
Bsp120I	GGGCCC	1 cut(s)	39
Bsp1286I	GDGCHC	2 cut(s)	43, 200
Bsp143I	GATC	2 cut(s)	216, 274
Bsp19I	CCATGG	1 cut(s)	264
BspACI	CCGC	3 cut(s)	57, 156, 331
BspANI	GGCC	2 cut(s)	41, 155
BspHI	TCATGA	1 cut(s)	189
BspLI	GGNNCC	4 cut(s)	40, 41, 83, 249
BspPI	GGATC	1 cut(s)	224
BspQI	GCTCTTC	1 cut(s)	188
BspT107I	GGYRCC	1 cut(s)	247
BsrI	ACTGG	1 cut(s)	246
BssECI	CCNNGG	2 cut(s)	264, 318
BssMI	GATC	2 cut(s)	216, 274
BssT1I	CCWWGG	1 cut(s)	264
Bst4CI	ACNGT	1 cut(s)	126
Bst6I	CTCTTC	1 cut(s)	188
BstC8I	GCNNGC	4 cut(s)	120, 149, 153, 308
BstDEI	CTNAG	1 cut(s)	87
BstDSI	CCRYGG	1 cut(s)	264
BstF5I	GGATG	2 cut(s)	11, 314
BstH2I	RGCGCY	1 cut(s)	331
BstHHI	GCGC	2 cut(s)	325, 330
BstKTI	GATC	2 cut(s)	219, 277
BstMBI	GATC	2 cut(s)	216, 274
BstMWI	GCNNNNNNNGC	2 cut(s)	119, 164
BstSCI	CCNGG	1 cut(s)	351
BstSLI	GKGCMC	1 cut(s)	43
BstV1I	GCAGC	3 cut(s)	154, 292, 337
BstV2I	GAAGAC	1 cut(s)	102
BsuRI	GGCC	2 cut(s)	41, 155
BtgI	CCRYGG	1 cut(s)	264
BtsCI	GGATG	2 cut(s)	11, 314
Cac8I	GCNNGC	4 cut(s)	120, 149, 153, 308
CciI	TCATGA	1 cut(s)	189
CfoI	GCGC	2 cut(s)	325, 330
Cfr13I	GGNCC	2 cut(s)	39, 40
CseI	GACGC	1 cut(s)	173
CviAII	CATG	2 cut(s)	190, 265
DdeI	CTNAG	1 cut(s)	87
DpnI	GATC	2 cut(s)	218, 276
DpnII	GATC	2 cut(s)	216, 274
Eam1104I	CTCTTC	1 cut(s)	188
EarI	CTCTTC	1 cut(s)	188
EciI	GGCGGA	1 cut(s)	72
Eco130I	CCWWGG	1 cut(s)	264
Eco24I	GRGCYC	1 cut(s)	43
Eco57I	CTGAAG	1 cut(s)	7
EcoO109I	RGGNCCY	1 cut(s)	39
EcoT14I	CCWWGG	1 cut(s)	264
EcoT38I	GRGCYC	1 cut(s)	43
ErhI	CCWWGG	1 cut(s)	264
FaeI	CATG	2 cut(s)	193, 268
FaiI	YATR	4 cut(s)	191, 239, 260, 266
FaqI	GGGAC	1 cut(s)	112
FatI	CATG	2 cut(s)	189, 264
Fnu4HI	GCNGC	5 cut(s)	156, 168, 281, 326, 331
FokI	GGATG	2 cut(s)	18, 301
FriOI	GRGCYC	1 cut(s)	43
Fsp4HI	GCNGC	5 cut(s)	156, 168, 281, 326, 331
FspBI	CTAG	1 cut(s)	18
GlaI	GCGC	2 cut(s)	324, 329
GluI	GCNGC	5 cut(s)	156, 168, 281, 326, 331
GsuI	CTGGAG	1 cut(s)	286
HaeII	RGCGCY	1 cut(s)	331
HaeIII	GGCC	2 cut(s)	41, 155
HapII	CCGG	1 cut(s)	352
HgaI	GACGC	1 cut(s)	173
HhaI	GCGC	2 cut(s)	325, 330
Hin1II	CATG	2 cut(s)	193, 268
Hin6I	GCGC	2 cut(s)	323, 328
HinP1I	GCGC	2 cut(s)	323, 328
HinfI	GANTC	2 cut(s)	60, 369
HpaII	CCGG	1 cut(s)	352
Hpy166II	GTNNAC	1 cut(s)	11
Hpy188I	TCNGA	1 cut(s)	374
Hpy188III	TCNNGA	3 cut(s)	178, 190, 214
Hpy8I	GTNNAC	1 cut(s)	11
Hpy99I	CGWCG	1 cut(s)	167
HpyAV	CCTTC	2 cut(s)	72, 85
HpyCH4III	ACNGT	1 cut(s)	126
HpyCH4V	TGCA	2 cut(s)	113, 170
HpyF10VI	GCNNNNNNNGC	2 cut(s)	119, 164
HpyF3I	CTNAG	1 cut(s)	87
Hsp92II	CATG	2 cut(s)	193, 268
HspAI	GCGC	2 cut(s)	323, 328
Kzo9I	GATC	2 cut(s)	216, 274
LguI	GCTCTTC	1 cut(s)	188
LpnPI	CCDG	8 cut(s)	137, 199, 214, 227, 292, 316, 349, 365
Lsp1109I	GCAGC	3 cut(s)	154, 292, 337
LweI	GCATC	1 cut(s)	179
MaeI	CTAG	1 cut(s)	18
MalI	GATC	2 cut(s)	218, 276
MboI	GATC	2 cut(s)	216, 274
MboII	GAAGA	3 cut(s)	107, 193, 205
MhlI	GDGCHC	2 cut(s)	43, 200
MluCI	AATT	1 cut(s)	132
MnlI	CCTC	6 cut(s)	77, 80, 238, 245, 283, 328
MseI	TTAA	1 cut(s)	254
MslI	CAYNNNNRTG	2 cut(s)	242, 263
MspI	CCGG	1 cut(s)	352
MspR9I	CCNGG	1 cut(s)	353
MteI	GCGCNGCGC	1 cut(s)	326
MwoI	GCNNNNNNNGC	2 cut(s)	119, 164
NciI	CCSGG	1 cut(s)	353
NcoI	CCATGG	1 cut(s)	264
NdeII	GATC	2 cut(s)	216, 274
NlaIII	CATG	2 cut(s)	193, 268
NlaIV	GGNNCC	4 cut(s)	40, 41, 83, 249
NmeAIII	GCCGAG	1 cut(s)	299
PagI	TCATGA	1 cut(s)	189
PciSI	GCTCTTC	1 cut(s)	188
PfeI	GAWTC	1 cut(s)	60
PkrI	GCNGC	5 cut(s)	157, 169, 282, 327, 332
PspN4I	GGNNCC	4 cut(s)	40, 41, 83, 249
PspOMI	GGGCCC	1 cut(s)	39
PspPI	GGNCC	2 cut(s)	39, 40
RseI	CAYNNNNRTG	2 cut(s)	242, 263
SapI	GCTCTTC	1 cut(s)	188
SaqAI	TTAA	1 cut(s)	254
SatI	GCNGC	5 cut(s)	156, 168, 281, 326, 331
Sau3AI	GATC	2 cut(s)	216, 274
Sau96I	GGNCC	2 cut(s)	39, 40
ScrFI	CCNGG	1 cut(s)	353
SduI	GDGCHC	2 cut(s)	43, 200
SetI	ASST	8 cut(s)	19, 23, 29, 49, 189, 210, 230, 285
SfaNI	GCATC	1 cut(s)	179
SmiMI	CAYNNNNRTG	2 cut(s)	242, 263
SmlI	CTYRAG	1 cut(s)	71
SmoI	CTYRAG	1 cut(s)	71
Sse9I	AATT	1 cut(s)	132
SsiI	CCGC	3 cut(s)	57, 156, 331
SspMI	CTAG	1 cut(s)	18
StyD4I	CCNGG	1 cut(s)	351
StyI	CCWWGG	1 cut(s)	264
TaaI	ACNGT	1 cut(s)	126
TaqI	TCGA	3 cut(s)	29, 49, 367
TasI	AATT	1 cut(s)	132
TauI	GCSGC	2 cut(s)	158, 333
TfiI	GAWTC	1 cut(s)	60
Tru1I	TTAA	1 cut(s)	254
Tru9I	TTAA	1 cut(s)	254
TseI	GCWGC	3 cut(s)	167, 280, 325
TspDTI	ATGAA	1 cut(s)	206
XspI	CTAG	1 cut(s)	18

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.