Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0005799

Physical Location & Seq

Genomic Coordinates Reverse (-)

21047744 .. 21056305

Gene Structure 8562 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00182040.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

ATGGGCGACGGCGGCGAATCGAAGGGGAGAAGAAATCACCCGAAGAGGAAAGGGGAGAGATCGGGGGAGAGGAGAGAGAAAGGTGGGTTTCCGGATTTGGAAACCTACCACAGTAAAATTTCATTATTTATACCAATTTCTACCATGAACCCAAGCTCGCAAAGGCGGAGTCTCCTCCCGGAGCGGCGGAACCCTAAGAAGGACGACGGCGGCGACGGAGTCATCGCCAGGATCTCCCAGTCCCAAATCCTCGCTCGCGGCAAGCAAGTCACCTCCGACGCCGGCTACGTCGCCAAGAAGCTGCTGAAGAGCACCGGCAAGGCCGCCTGGATCTTCGGCACCACCTTCCTCATCCTCGTCGTCCCTCTCATCATCGAGATGGACCGCGAGCAGCAGCTCACCGAGCTCGAGTTCCAGCAGGCCAACATCCTCGGCACCTCCGCCGGCTCCGCTCCTCCGGCCAAGCTCACAGAGAACCACTTTGGACAACGAAAGAAATATCTTCTGTGGGGCAACAAAGTTCCCCATCCGACAATGTTCAGAATCCTATGCACCTATGAGATGCAAGGAATTTCCCCAAAATTAAGTGGAAGAAACATTCCTAGTCGACCTAGGAAGAAAAAGAAGTCTAAATATGTTTGCATGGTATCTTACATATTTCAGTCACTTTCCCAGTTATACCTTTGCGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005741 GO:0005742 GO:0005773 GO:0005774 GO:0006605 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0007006 GO:0008104 GO:0008150 GO:0008320 GO:0008565 GO:0009536 GO:0009987 GO:0015031 GO:0015399 GO:0015405 GO:0015450 GO:0015833 GO:0016020 GO:0016021 GO:0016043 GO:0017038 GO:0019867 GO:0022804 GO:0022857 GO:0022884 GO:0030150 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031306 GO:0031307 GO:0031966 GO:0031967 GO:0031968 GO:0031975 GO:0032592 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0042887 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044437 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0044743 GO:0045040 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0061024 GO:0065002 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072655 GO:0072657 GO:0090150 GO:0090151 GO:0098573 GO:0098588 GO:0098796 GO:0098798 GO:0098799 GO:0098805 GO:1904680 GO:1990542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tom22

Protein Analysis

230

Amino Acids

25.87

Weight (kDa)

10.09

Isoelectric Point (pI)

58.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Tom22	PF04281	91 - 140	5e-07	Mitochondrial import receptor subunit Tom22

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005799)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04070 AT5G43970
fragaria_vesca	FvH4_2g20580
malus_domestica	MD00G1060300.v1.1 MD13G1221200.v1.1 MD15G1267400.v1.1 MD15G1267500.v1.1
prunus_persica	Prupe.1G047800_v2.0.a1 Prupe.8G216100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0395371 RchiOBHm_Chr6g0286751
rosa_laevigata	RLG00000012545
rosa_multiflora	Rmu_sc0007546.1_g000010 Rmu_sc0036247.1_g000001
rosa_roxburghii	Rroxscaffold_7G00182040
rosa_rugosa	Rorug03G0358000 Rorug06G0182800
rosa_samantha	Rh4BG057800 Rh4CG063300 Rh4DG054400 Rh6AG295200 Rh6BG299100 Rh6CG299100 Rh6DG291000
rosa_wichuraiana	Rw0G003270 Rw0G007690 Rw4G004730 Rw6G025420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	338, 434
AccBSI	CCGCTC	2 cut(s)	184, 452
AccI	GTMKAC	1 cut(s)	607
AccII	CGCG	2 cut(s)	258, 387
AccIII	TCCGGA	1 cut(s)	91
AclWI	GGATC	2 cut(s)	239, 338
AcoI	YGGCCR	1 cut(s)	459
AcsI	RAATTY	2 cut(s)	117, 570
AcuI	CTGAAG	1 cut(s)	326
AcyI	GRCGYC	1 cut(s)	279
AfiI	CCNNNNNNNGG	1 cut(s)	199
AjnI	CCWGG	2 cut(s)	227, 326
AluBI	AGCT	5 cut(s)	156, 301, 397, 406, 466
AluI	AGCT	5 cut(s)	156, 301, 397, 406, 466
Alw21I	GWGCWC	2 cut(s)	314, 408
Alw26I	GTCTC	1 cut(s)	176
AlwI	GGATC	2 cut(s)	239, 338
Ama87I	CYCGRG	1 cut(s)	407
Aor13HI	TCCGGA	1 cut(s)	91
AoxI	GGCC	3 cut(s)	321, 420, 459
ApeKI	GCWGC	3 cut(s)	301, 391, 394
ApoI	RAATTY	2 cut(s)	117, 570
ArsI	GACNNNNNNTTYG	2 cut(s)	154, 186
AspA2I	CCTAGG	1 cut(s)	611
AspS9I	GGNCC	1 cut(s)	382
AsuC2I	CCSGG	1 cut(s)	179
AsuHPI	GGTGA	3 cut(s)	29, 262, 391
AvaI	CYCGRG	1 cut(s)	407
AvaII	GGWCC	1 cut(s)	382
AvrII	CCTAGG	1 cut(s)	611
BanI	GGYRCC	2 cut(s)	338, 434
BanII	GRGCYC	1 cut(s)	408
Bbv12I	GWGCWC	2 cut(s)	314, 408
BbvI	GCAGC	3 cut(s)	288, 403, 406
BccI	CCATC	2 cut(s)	373, 534
BceAI	ACGGC	2 cut(s)	25, 223
BciT130I	CCWGG	2 cut(s)	229, 328
BcnI	CCSGG	1 cut(s)	179
BcoDI	GTCTC	1 cut(s)	176
BfaI	CTAG	2 cut(s)	603, 612
BisI	GCNGC	8 cut(s)	13, 185, 211, 259, 302, 324, 392, 395
BlnI	CCTAGG	1 cut(s)	611
BlsI	GCNGC	8 cut(s)	14, 186, 212, 260, 303, 325, 393, 396
Bme1390I	CCNGG	3 cut(s)	179, 229, 328
Bme18I	GGWCC	1 cut(s)	382
BmeT110I	CYCGRG	1 cut(s)	407
BmgT120I	GGNCC	1 cut(s)	382
BmiI	GGNNCC	4 cut(s)	191, 340, 436, 448
BmrFI	CCNGG	3 cut(s)	179, 229, 328
BmrI	ACTGGG	2 cut(s)	232, 667
BmsI	GCATC	1 cut(s)	552
BmuI	ACTGGG	2 cut(s)	232, 667
BpuMI	CCSGG	1 cut(s)	179
BsaHI	GRCGYC	1 cut(s)	279
BsaJI	CCNNGG	2 cut(s)	430, 611
BsaWI	WCCGGW	1 cut(s)	91
Bsc4I	CCNNNNNNNGG	1 cut(s)	199
Bse118I	RCCGGY	3 cut(s)	281, 314, 443
Bse1I	ACTGG	2 cut(s)	238, 673
BseAI	TCCGGA	1 cut(s)	91
BseBI	CCWGG	2 cut(s)	229, 328
BseDI	CCNNGG	2 cut(s)	430, 611
BseGI	GGATG	3 cut(s)	351, 426, 526
BseLI	CCNNNNNNNGG	1 cut(s)	199
BseNI	ACTGG	2 cut(s)	238, 673
BseRI	GAGGAG	3 cut(s)	85, 164, 444
BseXI	GCAGC	3 cut(s)	288, 403, 406
Bsh1236I	CGCG	2 cut(s)	258, 387
BshFI	GGCC	3 cut(s)	323, 422, 461
BshNI	GGYRCC	2 cut(s)	338, 434
BsiHKAI	GWGCWC	2 cut(s)	314, 408
BsiHKCI	CYCGRG	1 cut(s)	407
BsiSI	CCGG	6 cut(s)	92, 179, 282, 315, 444, 458
BslFI	GGGAC	2 cut(s)	226, 347
BslI	CCNNNNNNNGG	1 cut(s)	199
BsmAI	GTCTC	1 cut(s)	176
BsmFI	GGGAC	2 cut(s)	226, 347
BsnI	GGCC	3 cut(s)	323, 422, 461
BsoBI	CYCGRG	1 cut(s)	407
Bsp1286I	GDGCHC	2 cut(s)	314, 408
Bsp13I	TCCGGA	1 cut(s)	91
Bsp143I	GATC	3 cut(s)	59, 231, 330
BspANI	GGCC	3 cut(s)	323, 422, 461
BspEI	TCCGGA	1 cut(s)	91
BspFNI	CGCG	2 cut(s)	258, 387
BspLI	GGNNCC	4 cut(s)	191, 340, 436, 448
BspPI	GGATC	2 cut(s)	239, 338
BspQI	GCTCTTC	1 cut(s)	302
BspT107I	GGYRCC	2 cut(s)	338, 434
BsrBI	CCGCTC	2 cut(s)	184, 452
BsrFI	RCCGGY	3 cut(s)	281, 314, 443
BsrI	ACTGG	2 cut(s)	238, 673
BssAI	RCCGGY	3 cut(s)	281, 314, 443
BssECI	CCNNGG	2 cut(s)	430, 611
BssMI	GATC	3 cut(s)	59, 231, 330
BssNI	GRCGYC	1 cut(s)	279
BssT1I	CCWWGG	1 cut(s)	611
Bst2UI	CCWGG	2 cut(s)	229, 328
Bst4CI	ACNGT	1 cut(s)	113
Bst6I	CTCTTC	2 cut(s)	38, 302
BstACI	GRCGYC	1 cut(s)	279
BstC8I	GCNNGC	7 cut(s)	158, 256, 263, 283, 389, 420, 445
BstDEI	CTNAG	1 cut(s)	195
BstF5I	GGATG	3 cut(s)	351, 426, 526
BstFNI	CGCG	2 cut(s)	258, 387
BstKTI	GATC	3 cut(s)	62, 234, 333
BstMAI	GTCTC	1 cut(s)	176
BstMBI	GATC	3 cut(s)	59, 231, 330
BstMWI	GCNNNNNNNGC	4 cut(s)	12, 403, 449, 458
BstNI	CCWGG	2 cut(s)	229, 328
BstSCI	CCNGG	3 cut(s)	177, 227, 326
BstUI	CGCG	2 cut(s)	258, 387
BstV1I	GCAGC	3 cut(s)	288, 403, 406
BstX2I	RGATCY	2 cut(s)	231, 330
BstYI	RGATCY	2 cut(s)	231, 330
BsuRI	GGCC	3 cut(s)	323, 422, 461
BtgZI	GCGATG	1 cut(s)	208
BtsCI	GGATG	3 cut(s)	351, 426, 526
Cac8I	GCNNGC	7 cut(s)	158, 256, 263, 283, 389, 420, 445
Cfr10I	RCCGGY	3 cut(s)	281, 314, 443
Cfr13I	GGNCC	1 cut(s)	382
CseI	GACGC	1 cut(s)	287
CviAII	CATG	2 cut(s)	145, 643
DdeI	CTNAG	1 cut(s)	195
DpnI	GATC	3 cut(s)	61, 233, 332
DpnII	GATC	3 cut(s)	59, 231, 330
EaeI	YGGCCR	1 cut(s)	459
Eam1104I	CTCTTC	2 cut(s)	38, 302
EarI	CTCTTC	2 cut(s)	38, 302
EciI	GGCGGA	3 cut(s)	181, 202, 430
Ecl136II	GAGCTC	1 cut(s)	406
Eco130I	CCWWGG	1 cut(s)	611
Eco24I	GRGCYC	1 cut(s)	408
Eco47I	GGWCC	1 cut(s)	382
Eco53kI	GAGCTC	1 cut(s)	406
Eco57I	CTGAAG	1 cut(s)	326
Eco88I	CYCGRG	1 cut(s)	407
EcoICRI	GAGCTC	1 cut(s)	406
EcoRII	CCWGG	2 cut(s)	227, 326
EcoT14I	CCWWGG	1 cut(s)	611
EcoT38I	GRGCYC	1 cut(s)	408
ErhI	CCWWGG	1 cut(s)	611
FaeI	CATG	2 cut(s)	148, 646
FaiI	YATR	8 cut(s)	131, 146, 550, 558, 636, 644, 656, 679
FaqI	GGGAC	2 cut(s)	226, 347
FatI	CATG	2 cut(s)	144, 642
FblI	GTMKAC	1 cut(s)	607
Fnu4HI	GCNGC	8 cut(s)	13, 185, 211, 259, 302, 324, 392, 395
FokI	GGATG	3 cut(s)	338, 413, 513
FriOI	GRGCYC	1 cut(s)	408
Fsp4HI	GCNGC	8 cut(s)	13, 185, 211, 259, 302, 324, 392, 395
FspBI	CTAG	2 cut(s)	603, 612
GluI	GCNGC	8 cut(s)	13, 185, 211, 259, 302, 324, 392, 395
HaeIII	GGCC	3 cut(s)	323, 422, 461
HapII	CCGG	6 cut(s)	92, 179, 282, 315, 444, 458
HgaI	GACGC	1 cut(s)	287
Hin1I	GRCGYC	1 cut(s)	279
Hin1II	CATG	2 cut(s)	148, 646
HincII	GTYRAC	1 cut(s)	608
HindII	GTYRAC	1 cut(s)	608
HinfI	GANTC	4 cut(s)	17, 169, 219, 543
HpaII	CCGG	6 cut(s)	92, 179, 282, 315, 444, 458
HphI	GGTGA	3 cut(s)	29, 262, 391
Hpy166II	GTNNAC	1 cut(s)	608
Hpy188I	TCNGA	3 cut(s)	277, 531, 542
Hpy188III	TCNNGA	2 cut(s)	92, 376
Hpy8I	GTNNAC	1 cut(s)	608
Hpy99I	CGWCG	6 cut(s)	11, 209, 218, 281, 293, 362
HpyAV	CCTTC	3 cut(s)	16, 193, 355
HpyCH4III	ACNGT	1 cut(s)	113
HpyCH4IV	ACGT	1 cut(s)	288
HpyCH4V	TGCA	3 cut(s)	552, 565, 642
HpyF10VI	GCNNNNNNNGC	4 cut(s)	12, 403, 449, 458
HpyF3I	CTNAG	1 cut(s)	195
HpySE526I	ACGT	1 cut(s)	288
Hsp92I	GRCGYC	1 cut(s)	279
Hsp92II	CATG	2 cut(s)	148, 646
Kpn2I	TCCGGA	1 cut(s)	91
KroI	GCCGGC	2 cut(s)	281, 443
KroNI	GCCGGC	2 cut(s)	283, 445
Kzo9I	GATC	3 cut(s)	59, 231, 330
LguI	GCTCTTC	1 cut(s)	302
LmnI	GCTCC	3 cut(s)	181, 452, 457
Lsp1109I	GCAGC	3 cut(s)	288, 403, 406
LweI	GCATC	1 cut(s)	552
MaeI	CTAG	2 cut(s)	603, 612
MaeII	ACGT	1 cut(s)	288
MaeIII	GTNAC	2 cut(s)	268, 663
MalI	GATC	3 cut(s)	61, 233, 332
MbiI	CCGCTC	2 cut(s)	184, 452
MboI	GATC	3 cut(s)	59, 231, 330
MboII	GAAGA	7 cut(s)	42, 55, 319, 325, 494, 603, 628
MflI	RGATCY	2 cut(s)	231, 330
MhlI	GDGCHC	2 cut(s)	314, 408
MluCI	AATT	4 cut(s)	117, 135, 570, 581
MlyI	GAGTC	2 cut(s)	178, 228
MmeI	TCCRAC	2 cut(s)	300, 554
MroI	TCCGGA	1 cut(s)	91
MroNI	GCCGGC	2 cut(s)	281, 443
MseI	TTAA	2 cut(s)	584, 691
MslI	CAYNNNNRTG	1 cut(s)	377
MspI	CCGG	6 cut(s)	92, 179, 282, 315, 444, 458
MspR9I	CCNGG	3 cut(s)	179, 229, 328
MvaI	CCWGG	2 cut(s)	229, 328
MvnI	CGCG	2 cut(s)	258, 387
MwoI	GCNNNNNNNGC	4 cut(s)	12, 403, 449, 458
NaeI	GCCGGC	2 cut(s)	283, 445
NciI	CCSGG	1 cut(s)	179
NdeII	GATC	3 cut(s)	59, 231, 330
NgoMIV	GCCGGC	2 cut(s)	281, 443
NlaIII	CATG	2 cut(s)	148, 646
NlaIV	GGNNCC	4 cut(s)	191, 340, 436, 448
NmeAIII	GCCGAG	1 cut(s)	411
NmuCI	GTSAC	2 cut(s)	268, 663
PaeR7I	CTCGAG	1 cut(s)	407
PciSI	GCTCTTC	1 cut(s)	302
PcsI	WCGNNNNNNNCGW	2 cut(s)	210, 285
PdiI	GCCGGC	2 cut(s)	283, 445
PfeI	GAWTC	2 cut(s)	17, 543
PflFI	GACNNNGTC	1 cut(s)	218
PfoI	TCCNGGA	1 cut(s)	177
PkrI	GCNGC	8 cut(s)	14, 186, 212, 260, 303, 325, 393, 396
PleI	GAGTC	2 cut(s)	177, 227
PpsI	GAGTC	2 cut(s)	177, 227
Psp124BI	GAGCTC	1 cut(s)	408
Psp6I	CCWGG	2 cut(s)	227, 326
PspGI	CCWGG	2 cut(s)	227, 326
PspN4I	GGNNCC	4 cut(s)	191, 340, 436, 448
PspPI	GGNCC	1 cut(s)	382
PspXI	VCTCGAGB	1 cut(s)	407
PsuI	RGATCY	2 cut(s)	231, 330
PsyI	GACNNNGTC	1 cut(s)	218
RseI	CAYNNNNRTG	1 cut(s)	377
SacI	GAGCTC	1 cut(s)	408
SalI	GTCGAC	1 cut(s)	606
SapI	GCTCTTC	1 cut(s)	302
SaqAI	TTAA	2 cut(s)	584, 691
SatI	GCNGC	8 cut(s)	13, 185, 211, 259, 302, 324, 392, 395
Sau3AI	GATC	3 cut(s)	59, 231, 330
Sau96I	GGNCC	1 cut(s)	382
SchI	GAGTC	2 cut(s)	178, 228
ScrFI	CCNGG	3 cut(s)	179, 229, 328
SduI	GDGCHC	2 cut(s)	314, 408
SfaNI	GCATC	1 cut(s)	552
Sfr274I	CTCGAG	1 cut(s)	407
SinI	GGWCC	1 cut(s)	382
SlaI	CTCGAG	1 cut(s)	407
SmiMI	CAYNNNNRTG	1 cut(s)	377
SmlI	CTYRAG	1 cut(s)	407
SmoI	CTYRAG	1 cut(s)	407
Sse9I	AATT	4 cut(s)	117, 135, 570, 581
SspMI	CTAG	2 cut(s)	603, 612
SstI	GAGCTC	1 cut(s)	408
StyD4I	CCNGG	3 cut(s)	177, 227, 326
StyI	CCWWGG	1 cut(s)	611
TaaI	ACNGT	1 cut(s)	113
TaiI	ACGT	1 cut(s)	291
TaqI	TCGA	4 cut(s)	20, 375, 408, 607
TasI	AATT	4 cut(s)	117, 135, 570, 581
TauI	GCSGC	5 cut(s)	15, 187, 213, 261, 326
TfiI	GAWTC	2 cut(s)	17, 543
Tru1I	TTAA	2 cut(s)	584, 691
Tru9I	TTAA	2 cut(s)	584, 691
TseFI	GTSAC	2 cut(s)	268, 663
TseI	GCWGC	3 cut(s)	301, 391, 394
Tsp45I	GTSAC	2 cut(s)	268, 663
TspDTI	ATGAA	2 cut(s)	111, 161
TspGWI	ACGGA	1 cut(s)	231
Tth111I	GACNNNGTC	1 cut(s)	218
VpaK11BI	GGWCC	1 cut(s)	382
XapI	RAATTY	2 cut(s)	117, 570
XhoI	CTCGAG	1 cut(s)	407
XmaJI	CCTAGG	1 cut(s)	611
XmiI	GTMKAC	1 cut(s)	607
XspI	CTAG	2 cut(s)	603, 612

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.