Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007628

Physical Location & Seq

Genomic Coordinates Reverse (-)

1140278 .. 1141564

Gene Structure 1287 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G04260.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGGCGAATCAAGTGATCACCGGAATCAAAGAAACAGCTCAGTCAATTACTGGAGCGGCTCGTCCATGGGGCGATTTCCTCGATCTTTCCGCCTTCAGCTTCCCTTCCTCCATCGCCGATGCAACAACTCGCGTAACTCAGAACCTGACTCACTTCCGCATCAACTACAGTATCATTCTCTCTATCCTCCTAGGTCTAACCCTAATCACACGTCCAATCGCCATCCTCGCGTTTATAGCCGTTGGCTTAGCTTGGTTCTTCCTCTACTTCGCTCGCGAGGAGCCACTCACGATCTTCGGATTCACTATTGATGACGGCATCGTCGCTGTGCTTCTCATTGGTCTTTCGATTGGGTCGCTAGTTACCACCGGAGTTTGGCTCAGAGCTCTCACCACCGTTGGATTTGGTGTTCTGGTTTTGATCTTACACGCTGCGTTAAGAGGAACGGATGATCTTGTGAGTGACGATCTGGAATCACCTTATGGACCGATGCTCTCTACCTCTGGCGGTGGTAACGACGGTGCTCGTGGTGATTACAGTGGAATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006810 GO:0008150 GO:0012505 GO:0016032 GO:0016192 GO:0040011 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044000 GO:0044403 GO:0044419 GO:0044424 GO:0044444 GO:0044464 GO:0044766 GO:0046739 GO:0046794 GO:0051179 GO:0051234 GO:0051701 GO:0051704 GO:0051814 GO:0052126 GO:0052192 GO:1902579

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PRA1

Protein Analysis

182

Amino Acids

19.33

Weight (kDa)

4.61

Isoelectric Point (pI)

20.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PRA1	PF03208	19 - 156	2.1e-42	PRA1 family protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0007628)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04260
fragaria_vesca	FvH4_4g02350 FvH4_4g02350
malus_domestica	MD05G1024600.v1.1 MD08G1228100.v1.1 MD13G1205600.v1.1 MD16G1207300.v1.1
prunus_persica	Prupe.1G028100_v2.0.a1
pyrus_communis	pycom13g17840 pycom16g17430
rosa_chinensis	RchiOBHm_Chr4g0389731
rosa_laevigata	RLG00000009959
rosa_multiflora	Rmu_co8067152.1_g000001 Rmu_sc0000367.1_g000058 Rmu_sc0001336.1_g000076 Rmu_sc0003144.1_g000009 Rmu_sc0008048.1_g000008 Rmu_sc0010773.1_g000001 Rmu_sc0029928.1_g000001
rosa_roxburghii	Rroxscaffold_5G00335730
rosa_rugosa	Rorug03G0325000
rosa_samantha	Rh4CG031700 Rh7CG419100
rosa_wichuraiana	Rw4G002240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	320
AccBSI	CCGCTC	1 cut(s)	56
AccII	CGCG	3 cut(s)	132, 230, 276
AciI	CCGC	4 cut(s)	56, 90, 157, 507
AcuI	CTGAAG	1 cut(s)	79
AfiI	CCNNNNNNNGG	1 cut(s)	375
AflIII	ACRYGT	1 cut(s)	209
AjiI	CACGTC	1 cut(s)	212
AloI	GAACNNNNNNTCC	2 cut(s)	393, 425
AluBI	AGCT	4 cut(s)	38, 99, 251, 386
AluI	AGCT	4 cut(s)	38, 99, 251, 386
Alw21I	GWGCWC	2 cut(s)	388, 526
AlwNI	CAGNNNCTG	1 cut(s)	145
ApeKI	GCWGC	1 cut(s)	431
AspA2I	CCTAGG	1 cut(s)	190
AspS9I	GGNCC	1 cut(s)	485
AsuHPI	GGTGA	4 cut(s)	10, 382, 468, 542
AvaII	GGWCC	1 cut(s)	485
AvrII	CCTAGG	1 cut(s)	190
BaeI	ACNNNNGTAYC	2 cut(s)	154, 187
BanII	GRGCYC	1 cut(s)	388
BauI	CACGAG	1 cut(s)	525
Bbv12I	GWGCWC	2 cut(s)	388, 526
BbvI	GCAGC	1 cut(s)	418
BccI	CCATC	2 cut(s)	119, 230
BceAI	ACGGC	2 cut(s)	224, 331
BclI	TGATCA	1 cut(s)	15
BfaI	CTAG	2 cut(s)	191, 359
BfmI	CTRYAG	1 cut(s)	166
BisI	GCNGC	2 cut(s)	57, 432
BlnI	CCTAGG	1 cut(s)	190
BlpI	GCTNAGC	1 cut(s)	247
BlsI	GCNGC	2 cut(s)	58, 433
Bme18I	GGWCC	1 cut(s)	485
BmgBI	CACGTC	1 cut(s)	212
BmgT120I	GGNCC	1 cut(s)	485
BmiI	GGNNCC	1 cut(s)	282
BmsI	GCATC	4 cut(s)	109, 168, 327, 480
BplI	GAGNNNNNCTC	2 cut(s)	363, 395
BpmI	CTGGAG	1 cut(s)	72
Bpu1102I	GCTNAGC	1 cut(s)	247
BsaJI	CCNNGG	2 cut(s)	65, 190
BsaWI	WCCGGW	2 cut(s)	20, 368
Bsc4I	CCNNNNNNNGG	1 cut(s)	375
Bse1I	ACTGG	1 cut(s)	55
BseDI	CCNNGG	2 cut(s)	65, 190
BseGI	GGATG	2 cut(s)	222, 454
BseLI	CCNNNNNNNGG	1 cut(s)	375
BseMII	CTCAG	3 cut(s)	53, 152, 394
BseNI	ACTGG	1 cut(s)	55
BseRI	GAGGAG	1 cut(s)	293
BseXI	GCAGC	1 cut(s)	418
Bsh1236I	CGCG	3 cut(s)	132, 230, 276
BsiHKAI	GWGCWC	2 cut(s)	388, 526
BsiSI	CCGG	2 cut(s)	21, 369
BslI	CCNNNNNNNGG	1 cut(s)	375
Bsp1286I	GDGCHC	2 cut(s)	388, 526
Bsp143I	GATC	6 cut(s)	15, 82, 291, 420, 451, 466
Bsp1720I	GCTNAGC	1 cut(s)	247
Bsp19I	CCATGG	1 cut(s)	65
Bsp68I	TCGCGA	1 cut(s)	276
BspACI	CCGC	4 cut(s)	56, 90, 157, 507
BspCNI	CTCAG	3 cut(s)	52, 151, 393
BspFNI	CGCG	3 cut(s)	132, 230, 276
BspLI	GGNNCC	1 cut(s)	282
BsrBI	CCGCTC	1 cut(s)	56
BsrI	ACTGG	1 cut(s)	55
BssECI	CCNNGG	2 cut(s)	65, 190
BssMI	GATC	6 cut(s)	15, 82, 291, 420, 451, 466
BssSI	CACGAG	1 cut(s)	525
BssT1I	CCWWGG	2 cut(s)	65, 190
Bst2BI	CACGAG	1 cut(s)	525
Bst4CI	ACNGT	4 cut(s)	170, 397, 521, 539
BstC8I	GCNNGC	1 cut(s)	274
BstDEI	CTNAG	4 cut(s)	39, 138, 247, 380
BstDSI	CCRYGG	1 cut(s)	65
BstF5I	GGATG	2 cut(s)	222, 454
BstFNI	CGCG	3 cut(s)	132, 230, 276
BstKTI	GATC	6 cut(s)	18, 85, 294, 423, 454, 469
BstMBI	GATC	6 cut(s)	15, 82, 291, 420, 451, 466
BstMWI	GCNNNNNNNGC	2 cut(s)	227, 236
BstSFI	CTRYAG	1 cut(s)	166
BstUI	CGCG	3 cut(s)	132, 230, 276
BstV1I	GCAGC	1 cut(s)	418
BtgI	CCRYGG	1 cut(s)	65
BtgZI	GCGATG	1 cut(s)	97
BtrI	CACGTC	1 cut(s)	212
BtsCI	GGATG	2 cut(s)	222, 454
BtsIMutI	CAGTG	1 cut(s)	544
BtuMI	TCGCGA	1 cut(s)	276
Cac8I	GCNNGC	1 cut(s)	274
CaiI	CAGNNNCTG	1 cut(s)	145
Cfr13I	GGNCC	1 cut(s)	485
CviAII	CATG	1 cut(s)	66
CviJI	RGCY	9 cut(s)	38, 59, 99, 239, 246, 251, 283, 379, 386
CviKI_1	RGCY	9 cut(s)	38, 59, 99, 239, 246, 251, 283, 379, 386
DdeI	CTNAG	4 cut(s)	39, 138, 247, 380
DpnI	GATC	6 cut(s)	17, 84, 293, 422, 453, 468
DpnII	GATC	6 cut(s)	15, 82, 291, 420, 451, 466
DrdI	GACNNNNNNGTC	1 cut(s)	320
DseDI	GACNNNNNNGTC	1 cut(s)	320
EciI	GGCGGA	1 cut(s)	79
Ecl136II	GAGCTC	1 cut(s)	386
Eco130I	CCWWGG	2 cut(s)	65, 190
Eco24I	GRGCYC	1 cut(s)	388
Eco47I	GGWCC	1 cut(s)	485
Eco53kI	GAGCTC	1 cut(s)	386
Eco57I	CTGAAG	1 cut(s)	79
EcoICRI	GAGCTC	1 cut(s)	386
EcoT14I	CCWWGG	2 cut(s)	65, 190
EcoT38I	GRGCYC	1 cut(s)	388
ErhI	CCWWGG	2 cut(s)	65, 190
FaeI	CATG	1 cut(s)	69
FaiI	YATR	3 cut(s)	67, 236, 483
FatI	CATG	1 cut(s)	65
FbaI	TGATCA	1 cut(s)	15
Fnu4HI	GCNGC	2 cut(s)	57, 432
FokI	GGATG	2 cut(s)	209, 461
FriOI	GRGCYC	1 cut(s)	388
Fsp4HI	GCNGC	2 cut(s)	57, 432
FspBI	CTAG	2 cut(s)	191, 359
GluI	GCNGC	2 cut(s)	57, 432
GsuI	CTGGAG	1 cut(s)	72
HapII	CCGG	2 cut(s)	21, 369
Hin1II	CATG	1 cut(s)	69
HinfI	GANTC	6 cut(s)	7, 24, 148, 300, 473, 543
HpaII	CCGG	2 cut(s)	21, 369
HphI	GGTGA	4 cut(s)	10, 382, 468, 542
Hpy188I	TCNGA	4 cut(s)	141, 299, 383, 548
Hpy188III	TCNNGA	3 cut(s)	275, 289, 470
Hpy99I	CGWCG	2 cut(s)	326, 521
HpyAV	CCTTC	2 cut(s)	103, 114
HpyCH4III	ACNGT	4 cut(s)	170, 397, 521, 539
HpyCH4IV	ACGT	1 cut(s)	211
HpyCH4V	TGCA	1 cut(s)	122
HpyF10VI	GCNNNNNNNGC	2 cut(s)	227, 236
HpyF3I	CTNAG	4 cut(s)	39, 138, 247, 380
HpySE526I	ACGT	1 cut(s)	211
Hsp92II	CATG	1 cut(s)	69
Ksp22I	TGATCA	1 cut(s)	15
Kzo9I	GATC	6 cut(s)	15, 82, 291, 420, 451, 466
LmnI	GCTCC	2 cut(s)	53, 280
LpnPI	CCDG	7 cut(s)	34, 36, 158, 382, 398, 455, 489
Lsp1109I	GCAGC	1 cut(s)	418
LweI	GCATC	4 cut(s)	109, 168, 327, 480
MaeI	CTAG	2 cut(s)	191, 359
MaeII	ACGT	1 cut(s)	211
MaeIII	GTNAC	4 cut(s)	133, 361, 461, 512
MalI	GATC	6 cut(s)	17, 84, 293, 422, 453, 468
MbiI	CCGCTC	1 cut(s)	56
MboI	GATC	6 cut(s)	15, 82, 291, 420, 451, 466
MboII	GAAGA	2 cut(s)	250, 286
MhlI	GDGCHC	2 cut(s)	388, 526
MluCI	AATT	1 cut(s)	45
MlyI	GAGTC	1 cut(s)	142
MmeI	TCCRAC	1 cut(s)	379
MnlI	CCTC	8 cut(s)	89, 118, 197, 236, 271, 272, 434, 511
MseI	TTAA	1 cut(s)	437
MspI	CCGG	2 cut(s)	21, 369
MvnI	CGCG	3 cut(s)	132, 230, 276
MwoI	GCNNNNNNNGC	2 cut(s)	227, 236
NcoI	CCATGG	1 cut(s)	65
NdeII	GATC	6 cut(s)	15, 82, 291, 420, 451, 466
NlaIII	CATG	1 cut(s)	69
NlaIV	GGNNCC	1 cut(s)	282
NmuCI	GTSAC	1 cut(s)	461
NruI	TCGCGA	1 cut(s)	276
PfeI	GAWTC	5 cut(s)	7, 24, 300, 473, 543
PkrI	GCNGC	2 cut(s)	58, 433
PleI	GAGTC	1 cut(s)	142
PpsI	GAGTC	1 cut(s)	142
Psp124BI	GAGCTC	1 cut(s)	388
PspN4I	GGNNCC	1 cut(s)	282
PspPI	GGNCC	1 cut(s)	485
PstNI	CAGNNNCTG	1 cut(s)	145
RruI	TCGCGA	1 cut(s)	276
SacI	GAGCTC	1 cut(s)	388
SaqAI	TTAA	1 cut(s)	437
SatI	GCNGC	2 cut(s)	57, 432
Sau3AI	GATC	6 cut(s)	15, 82, 291, 420, 451, 466
Sau96I	GGNCC	1 cut(s)	485
SchI	GAGTC	1 cut(s)	142
SduI	GDGCHC	2 cut(s)	388, 526
SetI	ASST	9 cut(s)	40, 101, 147, 196, 214, 253, 388, 481, 503
SfaNI	GCATC	4 cut(s)	109, 168, 327, 480
SfcI	CTRYAG	1 cut(s)	166
SinI	GGWCC	1 cut(s)	485
Sse9I	AATT	1 cut(s)	45
SsiI	CCGC	4 cut(s)	56, 90, 157, 507
SspMI	CTAG	2 cut(s)	191, 359
SstI	GAGCTC	1 cut(s)	388
StyI	CCWWGG	2 cut(s)	65, 190
TaaI	ACNGT	4 cut(s)	170, 397, 521, 539
TaiI	ACGT	1 cut(s)	214
TaqI	TCGA	2 cut(s)	81, 347
TaqII	GACCGA	1 cut(s)	502
TasI	AATT	1 cut(s)	45
TauI	GCSGC	1 cut(s)	59
TfiI	GAWTC	5 cut(s)	7, 24, 300, 473, 543
Tru1I	TTAA	1 cut(s)	437
Tru9I	TTAA	1 cut(s)	437
TscAI	CASTG	1 cut(s)	544
TseFI	GTSAC	1 cut(s)	461
TseI	GCWGC	1 cut(s)	431
Tsp45I	GTSAC	1 cut(s)	461
TspGWI	ACGGA	1 cut(s)	461
TspRI	CASTG	1 cut(s)	544
VpaK11BI	GGWCC	1 cut(s)	485
XmaJI	CCTAGG	1 cut(s)	190
XspI	CTAG	2 cut(s)	191, 359

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.