Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0029928.1

Orthogroup ID

OG0007628

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1420

Gene Structure 1420 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0029928.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 415 bp

atgtccaccggaatagtgacccggttgaaggaagccggccaatcggcaatggccccgcacaggtcgtggtccgaatacgcctgcccaaccgcccccagcctccctttaaatctatctgacgccgcgacccgactcttccagaacttgacccattttcgaaccacctacgtcatcctcctcttggtcgagctcttcctcagcctcatctaccacccggtctccatcaatatattttggagtgaagatgagttggagatgatggtaatgggtttcctgagattggattttggcaggttgaggaagctctggggagctatggcgttgatgaatgccatgactgagtcgggagaagacgagttgagtttaatgcttcatgtccaggttgtgttttgggttttggttatctatgatgggt

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006810 GO:0008150 GO:0012505 GO:0016032 GO:0016192 GO:0040011 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044000 GO:0044403 GO:0044419 GO:0044424 GO:0044444 GO:0044464 GO:0044766 GO:0046739 GO:0046794 GO:0051179 GO:0051234 GO:0051701 GO:0051704 GO:0051814 GO:0052126 GO:0052192 GO:1902579

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PRA1

Protein Analysis

138

Amino Acids

15.73

Weight (kDa)

5.23

Isoelectric Point (pI)

45.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007628)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04260
fragaria_vesca	FvH4_4g02350 FvH4_4g02350
malus_domestica	MD05G1024600.v1.1 MD08G1228100.v1.1 MD13G1205600.v1.1 MD16G1207300.v1.1
prunus_persica	Prupe.1G028100_v2.0.a1
pyrus_communis	pycom13g17840 pycom16g17430
rosa_chinensis	RchiOBHm_Chr4g0389731
rosa_laevigata	RLG00000009959
rosa_multiflora	Rmu_co8067152.1_g000001 Rmu_sc0000367.1_g000058 Rmu_sc0001336.1_g000076 Rmu_sc0003144.1_g000009 Rmu_sc0008048.1_g000008 Rmu_sc0010773.1_g000001 Rmu_sc0029928.1_g000001
rosa_roxburghii	Rroxscaffold_5G00335730
rosa_rugosa	Rorug03G0325000
rosa_samantha	Rh4CG031700 Rh7CG419100
rosa_wichuraiana	Rw4G002240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	282
AccII	CGCG	1 cut(s)	125
AciI	CCGC	3 cut(s)	56, 90, 123
AcoI	YGGCCR	1 cut(s)	37
AcyI	GRCGYC	1 cut(s)	120
AfiI	CCNNNNNNNGG	4 cut(s)	28, 60, 181, 280
AgsI	TTSAA	1 cut(s)	28
AjnI	CCWGG	1 cut(s)	378
AluBI	AGCT	3 cut(s)	190, 304, 314
AluI	AGCT	3 cut(s)	190, 304, 314
Alw21I	GWGCWC	1 cut(s)	192
Alw26I	GTCTC	1 cut(s)	223
AoxI	GGCC	2 cut(s)	37, 51
AspS9I	GGNCC	2 cut(s)	52, 69
AsuC2I	CCSGG	2 cut(s)	22, 215
AsuII	TTCGAA	1 cut(s)	157
AvaII	GGWCC	1 cut(s)	69
BanII	GRGCYC	1 cut(s)	192
BbsI	GAAGAC	1 cut(s)	357
Bbv12I	GWGCWC	1 cut(s)	192
BbvCI	CCTCAGC	1 cut(s)	197
BccI	CCATC	3 cut(s)	230, 253, 404
BciT130I	CCWGG	1 cut(s)	380
BcnI	CCSGG	2 cut(s)	22, 215
BcoDI	GTCTC	1 cut(s)	223
BfuAI	ACCTGC	1 cut(s)	282
BisI	GCNGC	1 cut(s)	123
BlsI	GCNGC	1 cut(s)	124
Bme1390I	CCNGG	3 cut(s)	22, 215, 380
Bme18I	GGWCC	1 cut(s)	69
BmgT120I	GGNCC	2 cut(s)	52, 69
BmiI	GGNNCC	1 cut(s)	54
BmrFI	CCNGG	3 cut(s)	22, 215, 380
BpiI	GAAGAC	1 cut(s)	357
Bpu10I	CCTNAGC	1 cut(s)	197
Bpu14I	TTCGAA	1 cut(s)	157
BpuMI	CCSGG	2 cut(s)	22, 215
BsaHI	GRCGYC	1 cut(s)	120
BsaI	GGTCTC	1 cut(s)	223
BsaWI	WCCGGW	1 cut(s)	8
BsaXI	ACNNNNNCTCC	2 cut(s)	203, 233
Bsc4I	CCNNNNNNNGG	4 cut(s)	28, 60, 181, 280
Bse118I	RCCGGY	1 cut(s)	35
Bse3DI	GCAATG	1 cut(s)	54
BseBI	CCWGG	1 cut(s)	380
BseGI	GGATG	1 cut(s)	171
BseLI	CCNNNNNNNGG	4 cut(s)	28, 60, 181, 280
BseMI	GCAATG	1 cut(s)	54
BseMII	CTCAG	3 cut(s)	211, 266, 330
BseRI	GAGGAG	1 cut(s)	167
BseYI	CCCAGC	1 cut(s)	95
Bsh1236I	CGCG	1 cut(s)	125
BshFI	GGCC	2 cut(s)	39, 53
BsiHKAI	GWGCWC	1 cut(s)	192
BsiSI	CCGG	4 cut(s)	9, 22, 36, 215
BslI	CCNNNNNNNGG	4 cut(s)	28, 60, 181, 280
BsmAI	GTCTC	1 cut(s)	223
BsmI	GAATGC	1 cut(s)	334
BsnI	GGCC	2 cut(s)	39, 53
Bso31I	GGTCTC	1 cut(s)	223
Bsp119I	TTCGAA	1 cut(s)	157
Bsp1286I	GDGCHC	1 cut(s)	192
BspACI	CCGC	3 cut(s)	56, 90, 123
BspANI	GGCC	2 cut(s)	39, 53
BspCNI	CTCAG	3 cut(s)	210, 267, 331
BspFNI	CGCG	1 cut(s)	125
BspLI	GGNNCC	1 cut(s)	54
BspMI	ACCTGC	1 cut(s)	282
BspQI	GCTCTTC	1 cut(s)	197
BspT104I	TTCGAA	1 cut(s)	157
BspTNI	GGTCTC	1 cut(s)	223
BsrDI	GCAATG	1 cut(s)	54
BsrFI	RCCGGY	1 cut(s)	35
BssAI	RCCGGY	1 cut(s)	35
BssNI	GRCGYC	1 cut(s)	120
Bst2UI	CCWGG	1 cut(s)	380
Bst6I	CTCTTC	2 cut(s)	140, 197
BstACI	GRCGYC	1 cut(s)	120
BstBI	TTCGAA	1 cut(s)	157
BstC8I	GCNNGC	2 cut(s)	37, 82
BstDEI	CTNAG	3 cut(s)	197, 275, 339
BstF5I	GGATG	1 cut(s)	171
BstFNI	CGCG	1 cut(s)	125
BstMAI	GTCTC	1 cut(s)	223
BstNI	CCWGG	1 cut(s)	380
BstSCI	CCNGG	3 cut(s)	20, 213, 378
BstUI	CGCG	1 cut(s)	125
BstV2I	GAAGAC	1 cut(s)	357
BsuRI	GGCC	2 cut(s)	39, 53
BtsCI	GGATG	1 cut(s)	171
BveI	ACCTGC	1 cut(s)	282
Cac8I	GCNNGC	2 cut(s)	37, 82
Cfr10I	RCCGGY	1 cut(s)	35
Cfr13I	GGNCC	2 cut(s)	52, 69
CseI	GACGC	1 cut(s)	128
CviAII	CATG	2 cut(s)	334, 374
CviJI	RGCY	8 cut(s)	35, 39, 53, 99, 190, 201, 304, 314
CviKI_1	RGCY	8 cut(s)	35, 39, 53, 99, 190, 201, 304, 314
DdeI	CTNAG	3 cut(s)	197, 275, 339
DraI	TTTAAA	1 cut(s)	108
EaeI	YGGCCR	1 cut(s)	37
Eam1104I	CTCTTC	2 cut(s)	140, 197
EarI	CTCTTC	2 cut(s)	140, 197
Ecl136II	GAGCTC	1 cut(s)	190
Eco24I	GRGCYC	1 cut(s)	192
Eco31I	GGTCTC	1 cut(s)	223
Eco47I	GGWCC	1 cut(s)	69
Eco53kI	GAGCTC	1 cut(s)	190
EcoICRI	GAGCTC	1 cut(s)	190
EcoRII	CCWGG	1 cut(s)	378
EcoT38I	GRGCYC	1 cut(s)	192
FaeI	CATG	2 cut(s)	337, 377
FaiI	YATR	5 cut(s)	230, 317, 335, 375, 408
FatI	CATG	2 cut(s)	333, 373
FauI	CCCGC	1 cut(s)	63
Fnu4HI	GCNGC	1 cut(s)	123
FokI	GGATG	1 cut(s)	158
FriOI	GRGCYC	1 cut(s)	192
Fsp4HI	GCNGC	1 cut(s)	123
GluI	GCNGC	1 cut(s)	123
GsaI	CCCAGC	1 cut(s)	99
HaeIII	GGCC	2 cut(s)	39, 53
HapII	CCGG	4 cut(s)	9, 22, 36, 215
HgaI	GACGC	1 cut(s)	128
Hin1I	GRCGYC	1 cut(s)	120
Hin1II	CATG	2 cut(s)	337, 377
HinfI	GANTC	2 cut(s)	132, 341
HpaII	CCGG	4 cut(s)	9, 22, 36, 215
Hpy166II	GTNNAC	1 cut(s)	6
Hpy188I	TCNGA	2 cut(s)	73, 118
Hpy188III	TCNNGA	3 cut(s)	139, 274, 345
Hpy8I	GTNNAC	1 cut(s)	6
HpyAV	CCTTC	1 cut(s)	22
HpyCH4IV	ACGT	1 cut(s)	168
HpyF3I	CTNAG	3 cut(s)	197, 275, 339
HpySE526I	ACGT	1 cut(s)	168
Hsp92I	GRCGYC	1 cut(s)	120
Hsp92II	CATG	2 cut(s)	337, 377
KroI	GCCGGC	1 cut(s)	35
KroNI	GCCGGC	1 cut(s)	37
LguI	GCTCTTC	1 cut(s)	197
LmnI	GCTCC	1 cut(s)	311
MaeII	ACGT	1 cut(s)	168
MaeIII	GTNAC	1 cut(s)	16
MboII	GAAGA	4 cut(s)	127, 184, 254, 362
MhlI	GDGCHC	1 cut(s)	192
MlyI	GAGTC	2 cut(s)	126, 350
MmeI	TCCRAC	1 cut(s)	231
MnlI	CCTC	6 cut(s)	110, 185, 188, 206, 212, 291
MroNI	GCCGGC	1 cut(s)	35
MseI	TTAA	2 cut(s)	107, 365
MspI	CCGG	4 cut(s)	9, 22, 36, 215
MspR9I	CCNGG	3 cut(s)	22, 215, 380
Mva1269I	GAATGC	1 cut(s)	334
MvaI	CCWGG	1 cut(s)	380
MvnI	CGCG	1 cut(s)	125
NaeI	GCCGGC	1 cut(s)	37
NciI	CCSGG	2 cut(s)	22, 215
NgoMIV	GCCGGC	1 cut(s)	35
NlaIII	CATG	2 cut(s)	337, 377
NlaIV	GGNNCC	1 cut(s)	54
NmuCI	GTSAC	1 cut(s)	16
NspV	TTCGAA	1 cut(s)	157
PciSI	GCTCTTC	1 cut(s)	197
PctI	GAATGC	1 cut(s)	334
PdiI	GCCGGC	1 cut(s)	37
PflFI	GACNNNGTC	1 cut(s)	340
PkrI	GCNGC	1 cut(s)	124
PleI	GAGTC	2 cut(s)	126, 349
PpsI	GAGTC	2 cut(s)	126, 349
Psp124BI	GAGCTC	1 cut(s)	192
Psp6I	CCWGG	1 cut(s)	378
PspFI	CCCAGC	1 cut(s)	95
PspGI	CCWGG	1 cut(s)	378
PspN4I	GGNNCC	1 cut(s)	54
PspPI	GGNCC	2 cut(s)	52, 69
PsyI	GACNNNGTC	1 cut(s)	340
SacI	GAGCTC	1 cut(s)	192
SapI	GCTCTTC	1 cut(s)	197
SaqAI	TTAA	2 cut(s)	107, 365
SatI	GCNGC	1 cut(s)	123
Sau96I	GGNCC	2 cut(s)	52, 69
SchI	GAGTC	2 cut(s)	126, 350
ScrFI	CCNGG	3 cut(s)	22, 215, 380
SduI	GDGCHC	1 cut(s)	192
SetI	ASST	8 cut(s)	65, 167, 171, 192, 296, 306, 316, 384
SfuI	TTCGAA	1 cut(s)	157
SinI	GGWCC	1 cut(s)	69
SsiI	CCGC	3 cut(s)	56, 90, 123
SstI	GAGCTC	1 cut(s)	192
StyD4I	CCNGG	3 cut(s)	20, 213, 378
TaiI	ACGT	1 cut(s)	171
TaqI	TCGA	2 cut(s)	157, 186
TauI	GCSGC	1 cut(s)	125
Tru1I	TTAA	2 cut(s)	107, 365
Tru9I	TTAA	2 cut(s)	107, 365
TseFI	GTSAC	1 cut(s)	16
Tsp45I	GTSAC	1 cut(s)	16
TspDTI	ATGAA	2 cut(s)	341, 362
Tth111I	GACNNNGTC	1 cut(s)	340
VpaK11BI	GGWCC	1 cut(s)	69

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.