Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0007628

Physical Location & Seq

Genomic Coordinates Reverse (-)

3998914 .. 3999126

Gene Structure 213 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1024600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 213 bp

ATGGTTGTTCTTGCGGTGGTGACGGTTGTGGCTCTGGTCCTAACTCACATGTGGGTCAACGTCATCGTTTCGAGAGTGATTGGGGTCGTTTTGATTGGGCTGCATGAGGTGTTTAGAGAGACGGAGGATCTTGTTATGGATGATCAAGAATTGTCGTATGGGGCTCTGCTCTCGGATGATACTGACCCAAGTGGGAATTACACCATTATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006810 GO:0008150 GO:0012505 GO:0016032 GO:0016192 GO:0040011 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044000 GO:0044403 GO:0044419 GO:0044424 GO:0044444 GO:0044464 GO:0044766 GO:0046739 GO:0046794 GO:0051179 GO:0051234 GO:0051701 GO:0051704 GO:0051814 GO:0052126 GO:0052192 GO:1902579

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PRA1

Protein Analysis

71

Amino Acids

7.7

Weight (kDa)

4.06

Isoelectric Point (pI)

12.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PRA1	PF03208	1 - 48	1.3e-08	PRA1 family protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007628)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04260
fragaria_vesca	FvH4_4g02350 FvH4_4g02350
malus_domestica	MD05G1024600.v1.1 MD08G1228100.v1.1 MD13G1205600.v1.1 MD16G1207300.v1.1
prunus_persica	Prupe.1G028100_v2.0.a1
pyrus_communis	pycom13g17840 pycom16g17430
rosa_chinensis	RchiOBHm_Chr4g0389731
rosa_laevigata	RLG00000009959
rosa_multiflora	Rmu_co8067152.1_g000001 Rmu_sc0000367.1_g000058 Rmu_sc0001336.1_g000076 Rmu_sc0003144.1_g000009 Rmu_sc0008048.1_g000008 Rmu_sc0010773.1_g000001 Rmu_sc0029928.1_g000001
rosa_roxburghii	Rroxscaffold_5G00335730
rosa_rugosa	Rorug03G0325000
rosa_samantha	Rh4CG031700 Rh7CG419100
rosa_wichuraiana	Rw4G002240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	14
AclWI	GGATC	1 cut(s)	135
AflIII	ACRYGT	1 cut(s)	48
Alw26I	GTCTC	1 cut(s)	113
AlwI	GGATC	1 cut(s)	135
ApeKI	GCWGC	1 cut(s)	100
AspS9I	GGNCC	1 cut(s)	37
AsuHPI	GGTGA	1 cut(s)	31
AvaII	GGWCC	1 cut(s)	37
BanII	GRGCYC	1 cut(s)	166
BbvI	GCAGC	1 cut(s)	87
BclI	TGATCA	1 cut(s)	142
BcoDI	GTCTC	1 cut(s)	113
BisI	GCNGC	1 cut(s)	101
BlsI	GCNGC	1 cut(s)	102
Bme18I	GGWCC	1 cut(s)	37
BmgT120I	GGNCC	1 cut(s)	37
BseGI	GGATG	2 cut(s)	145, 181
BseXI	GCAGC	1 cut(s)	87
BsmAI	GTCTC	1 cut(s)	113
BsmBI	CGTCTC	1 cut(s)	113
Bsp1286I	GDGCHC	1 cut(s)	166
Bsp143I	GATC	2 cut(s)	127, 142
BspACI	CCGC	1 cut(s)	14
BspPI	GGATC	1 cut(s)	135
BssMI	GATC	2 cut(s)	127, 142
Bst4CI	ACNGT	1 cut(s)	25
BstF5I	GGATG	2 cut(s)	145, 181
BstKTI	GATC	2 cut(s)	130, 145
BstMAI	GTCTC	1 cut(s)	113
BstMBI	GATC	2 cut(s)	127, 142
BstNSI	RCATGY	1 cut(s)	52
BstV1I	GCAGC	1 cut(s)	87
BstX2I	RGATCY	1 cut(s)	127
BstYI	RGATCY	1 cut(s)	127
BtsCI	GGATG	2 cut(s)	145, 181
Cfr13I	GGNCC	1 cut(s)	37
CviAII	CATG	2 cut(s)	49, 104
CviJI	RGCY	3 cut(s)	32, 100, 164
CviKI_1	RGCY	3 cut(s)	32, 100, 164
DpnI	GATC	2 cut(s)	129, 144
DpnII	GATC	2 cut(s)	127, 142
Eco24I	GRGCYC	1 cut(s)	166
Eco47I	GGWCC	1 cut(s)	37
EcoT38I	GRGCYC	1 cut(s)	166
Esp3I	CGTCTC	1 cut(s)	113
FaeI	CATG	2 cut(s)	52, 107
FaiI	YATR	5 cut(s)	50, 105, 137, 159, 209
FatI	CATG	2 cut(s)	48, 103
FbaI	TGATCA	1 cut(s)	142
Fnu4HI	GCNGC	1 cut(s)	101
FokI	GGATG	2 cut(s)	152, 188
FriOI	GRGCYC	1 cut(s)	166
Fsp4HI	GCNGC	1 cut(s)	101
GluI	GCNGC	1 cut(s)	101
Hin1II	CATG	2 cut(s)	52, 107
HincII	GTYRAC	1 cut(s)	58
HindII	GTYRAC	1 cut(s)	58
HphI	GGTGA	1 cut(s)	31
Hpy166II	GTNNAC	1 cut(s)	58
Hpy188I	TCNGA	1 cut(s)	175
Hpy188III	TCNNGA	2 cut(s)	72, 146
Hpy8I	GTNNAC	1 cut(s)	58
HpyCH4III	ACNGT	1 cut(s)	25
HpyCH4IV	ACGT	1 cut(s)	60
HpyCH4V	TGCA	1 cut(s)	103
HpySE526I	ACGT	1 cut(s)	60
Hsp92II	CATG	2 cut(s)	52, 107
Ksp22I	TGATCA	1 cut(s)	142
Kzo9I	GATC	2 cut(s)	127, 142
LpnPI	CCDG	1 cut(s)	20
Lsp1109I	GCAGC	1 cut(s)	87
MaeII	ACGT	1 cut(s)	60
MaeIII	GTNAC	1 cut(s)	19
MalI	GATC	2 cut(s)	129, 144
MboI	GATC	2 cut(s)	127, 142
MflI	RGATCY	1 cut(s)	127
MhlI	GDGCHC	1 cut(s)	166
MluCI	AATT	2 cut(s)	149, 196
MnlI	CCTC	2 cut(s)	100, 118
MslI	CAYNNNNRTG	1 cut(s)	206
NdeII	GATC	2 cut(s)	127, 142
NlaIII	CATG	2 cut(s)	52, 107
NmuCI	GTSAC	1 cut(s)	19
NspI	RCATGY	1 cut(s)	52
PciI	ACATGT	1 cut(s)	48
PkrI	GCNGC	1 cut(s)	102
PscI	ACATGT	1 cut(s)	48
PspPI	GGNCC	1 cut(s)	37
PsuI	RGATCY	1 cut(s)	127
RseI	CAYNNNNRTG	1 cut(s)	206
SatI	GCNGC	1 cut(s)	101
Sau3AI	GATC	2 cut(s)	127, 142
Sau96I	GGNCC	1 cut(s)	37
SduI	GDGCHC	1 cut(s)	166
SetI	ASST	2 cut(s)	63, 111
SgeI	CNNG	9 cut(s)	23, 47, 61, 84, 116, 143, 158, 184, 201
SinI	GGWCC	1 cut(s)	37
SmiMI	CAYNNNNRTG	1 cut(s)	206
Sse9I	AATT	2 cut(s)	149, 196
SsiI	CCGC	1 cut(s)	14
TaaI	ACNGT	1 cut(s)	25
TaiI	ACGT	1 cut(s)	63
TaqI	TCGA	1 cut(s)	71
TasI	AATT	2 cut(s)	149, 196
TseFI	GTSAC	1 cut(s)	19
TseI	GCWGC	1 cut(s)	100
Tsp45I	GTSAC	1 cut(s)	19
TspGWI	ACGGA	1 cut(s)	137
VpaK11BI	GGWCC	1 cut(s)	37
XceI	RCATGY	1 cut(s)	52

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.