Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0007628

Physical Location & Seq

Genomic Coordinates Reverse (-)

2159188 .. 2161777

Gene Structure 2590 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g02350.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGTCCACCGGAATCGTGACCCGTTTCAAAGAAGCCGGCCAATCAGCGATGGCCGCCCACCGCCCCTGGTCCGAATTCTCCGACCTCTCCGCCCTCAGCCTCCCTCAAAACTTCTCCGACGCGACGACCCGGCTCTTCCAGAACTCGACCCATTTCCGGTCAAACTACGCCATGCTCGTCTTGGTCGTCCTCTTCCTCAGCCTCCTCTACCACCCTGTCTCCCTCATCGTCTTCCTCCTCGTCTTCGCCGCCTGGGTCTTCTTCTACTTCTCCCGCGACGACGACGTTTCGGTCTTCGGGTTTGTTGTCGGGGACCGGGTCGTGATGGCTGTGCTGGGATTGGTGACTGTGGTGGCGCTGGTGCTGACAAACGTGTGGCTGAACGTCGTCGTTTCGGGGGTGGTGGGGGCGGTGGTGGTTTGTGTTCATGCGGTGTTTAGGGGCACGGAGGATCTTGTGATGGAGGATAAGGAGTCGCCTTATGGGGCACTGCTTTCGGATGATCCTGACCCGCGTGGGAACTACACCATTATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006810 GO:0008150 GO:0012505 GO:0016032 GO:0016192 GO:0040011 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044000 GO:0044403 GO:0044419 GO:0044424 GO:0044444 GO:0044464 GO:0044766 GO:0046739 GO:0046794 GO:0051179 GO:0051234 GO:0051701 GO:0051704 GO:0051814 GO:0052126 GO:0052192 GO:1902579

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PRA1

Protein Analysis

179

Amino Acids

19.62

Weight (kDa)

4.97

Isoelectric Point (pI)

22.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PRA1	PF03208	16 - 156	3.7e-46	PRA1 family protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007628)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04260
fragaria_vesca	FvH4_4g02350 FvH4_4g02350
malus_domestica	MD05G1024600.v1.1 MD08G1228100.v1.1 MD13G1205600.v1.1 MD16G1207300.v1.1
prunus_persica	Prupe.1G028100_v2.0.a1
pyrus_communis	pycom13g17840 pycom16g17430
rosa_chinensis	RchiOBHm_Chr4g0389731
rosa_laevigata	RLG00000009959
rosa_multiflora	Rmu_co8067152.1_g000001 Rmu_sc0000367.1_g000058 Rmu_sc0001336.1_g000076 Rmu_sc0003144.1_g000009 Rmu_sc0008048.1_g000008 Rmu_sc0010773.1_g000001 Rmu_sc0029928.1_g000001
rosa_roxburghii	Rroxscaffold_5G00335730
rosa_rugosa	Rorug03G0325000
rosa_samantha	Rh4CG031700 Rh7CG419100
rosa_wichuraiana	Rw4G002240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	290
AccII	CGCG	3 cut(s)	122, 276, 514
AciI	CCGC	8 cut(s)	54, 61, 90, 249, 274, 410, 431, 512
AclWI	GGATC	2 cut(s)	459, 497
AcoI	YGGCCR	2 cut(s)	37, 51
AcsI	RAATTY	1 cut(s)	74
AfiI	CCNNNNNNNGG	1 cut(s)	156
AflIII	ACRYGT	1 cut(s)	372
AgsI	TTSAA	1 cut(s)	28
AjnI	CCWGG	2 cut(s)	65, 251
Alw26I	GTCTC	1 cut(s)	223
AlwI	GGATC	2 cut(s)	459, 497
AoxI	GGCC	2 cut(s)	37, 51
ApoI	RAATTY	1 cut(s)	74
AspLEI	GCGC	1 cut(s)	358
AspS9I	GGNCC	2 cut(s)	69, 313
AsuC2I	CCSGG	2 cut(s)	130, 317
AsuHPI	GGTGA	1 cut(s)	355
AvaII	GGWCC	2 cut(s)	69, 313
BaeGI	GKGCMC	2 cut(s)	446, 490
BbsI	GAAGAC	4 cut(s)	223, 235, 250, 286
BbvCI	CCTCAGC	2 cut(s)	95, 197
BccI	CCATC	3 cut(s)	43, 319, 454
BcgI	CGANNNNNNTGC	2 cut(s)	477, 511
BciT130I	CCWGG	2 cut(s)	67, 253
BcnI	CCSGG	2 cut(s)	130, 317
BcoDI	GTCTC	1 cut(s)	223
BfoI	RGCGCY	1 cut(s)	359
BisI	GCNGC	2 cut(s)	54, 249
BlsI	GCNGC	2 cut(s)	55, 250
Bme1390I	CCNGG	4 cut(s)	67, 130, 253, 317
Bme18I	GGWCC	2 cut(s)	69, 313
BmgT120I	GGNCC	2 cut(s)	69, 313
BmiI	GGNNCC	1 cut(s)	314
BmrFI	CCNGG	4 cut(s)	67, 130, 253, 317
BpiI	GAAGAC	4 cut(s)	223, 235, 250, 286
Bpu10I	CCTNAGC	2 cut(s)	95, 197
BpuMI	CCSGG	2 cut(s)	130, 317
BsaJI	CCNNGG	2 cut(s)	65, 252
BsaWI	WCCGGW	2 cut(s)	8, 156
BsaXI	ACNNNNNCTCC	2 cut(s)	203, 233
Bsc4I	CCNNNNNNNGG	1 cut(s)	156
Bse118I	RCCGGY	1 cut(s)	35
BseBI	CCWGG	2 cut(s)	67, 253
BseDI	CCNNGG	2 cut(s)	65, 252
BseGI	GGATG	1 cut(s)	505
BseLI	CCNNNNNNNGG	1 cut(s)	156
BseMII	CTCAG	2 cut(s)	109, 211
BseRI	GAGGAG	2 cut(s)	194, 227
BseSI	GKGCMC	2 cut(s)	446, 490
BseYI	CCCAGC	1 cut(s)	334
Bsh1236I	CGCG	3 cut(s)	122, 276, 514
BshFI	GGCC	2 cut(s)	39, 53
BsiSI	CCGG	5 cut(s)	9, 36, 130, 157, 316
BslFI	GGGAC	1 cut(s)	326
BslI	CCNNNNNNNGG	1 cut(s)	156
BsmAI	GTCTC	1 cut(s)	223
BsmFI	GGGAC	1 cut(s)	326
BsnI	GGCC	2 cut(s)	39, 53
Bsp1286I	GDGCHC	2 cut(s)	446, 490
Bsp143I	GATC	2 cut(s)	451, 502
BspACI	CCGC	8 cut(s)	54, 61, 90, 249, 274, 410, 431, 512
BspANI	GGCC	2 cut(s)	39, 53
BspCNI	CTCAG	2 cut(s)	108, 210
BspFNI	CGCG	3 cut(s)	122, 276, 514
BspLI	GGNNCC	1 cut(s)	314
BspPI	GGATC	2 cut(s)	459, 497
BspQI	GCTCTTC	1 cut(s)	140
BsrFI	RCCGGY	1 cut(s)	35
BssAI	RCCGGY	1 cut(s)	35
BssECI	CCNNGG	2 cut(s)	65, 252
BssMI	GATC	2 cut(s)	451, 502
Bst2UI	CCWGG	2 cut(s)	67, 253
Bst4CI	ACNGT	1 cut(s)	349
Bst6I	CTCTTC	2 cut(s)	140, 197
BstC8I	GCNNGC	1 cut(s)	37
BstDEI	CTNAG	2 cut(s)	95, 197
BstF5I	GGATG	1 cut(s)	505
BstFNI	CGCG	3 cut(s)	122, 276, 514
BstH2I	RGCGCY	1 cut(s)	359
BstHHI	GCGC	1 cut(s)	358
BstKTI	GATC	2 cut(s)	454, 505
BstMAI	GTCTC	1 cut(s)	223
BstMBI	GATC	2 cut(s)	451, 502
BstMWI	GCNNNNNNNGC	1 cut(s)	53
BstNI	CCWGG	2 cut(s)	67, 253
BstSCI	CCNGG	4 cut(s)	65, 128, 251, 315
BstSLI	GKGCMC	2 cut(s)	446, 490
BstUI	CGCG	3 cut(s)	122, 276, 514
BstV2I	GAAGAC	4 cut(s)	223, 235, 250, 286
BstX2I	RGATCY	1 cut(s)	451
BstYI	RGATCY	1 cut(s)	451
BsuRI	GGCC	2 cut(s)	39, 53
BtgZI	GCGATG	1 cut(s)	62
BtsCI	GGATG	1 cut(s)	505
BtsI	GCAGTG	1 cut(s)	488
BtsIMutI	CAGTG	1 cut(s)	488
Cac8I	GCNNGC	1 cut(s)	37
CfoI	GCGC	1 cut(s)	358
Cfr10I	RCCGGY	1 cut(s)	35
Cfr13I	GGNCC	2 cut(s)	69, 313
CseI	GACGC	1 cut(s)	128
CviAII	CATG	2 cut(s)	172, 428
CviJI	RGCY	8 cut(s)	35, 39, 53, 99, 133, 201, 329, 379
CviKI_1	RGCY	8 cut(s)	35, 39, 53, 99, 133, 201, 329, 379
DdeI	CTNAG	2 cut(s)	95, 197
DpnI	GATC	2 cut(s)	453, 504
DpnII	GATC	2 cut(s)	451, 502
DrdI	GACNNNNNNGTC	1 cut(s)	290
DseDI	GACNNNNNNGTC	1 cut(s)	290
EaeI	YGGCCR	2 cut(s)	37, 51
Eam1104I	CTCTTC	2 cut(s)	140, 197
EarI	CTCTTC	2 cut(s)	140, 197
EciI	GGCGGA	1 cut(s)	79
Eco47I	GGWCC	2 cut(s)	69, 313
EcoRI	GAATTC	1 cut(s)	74
EcoRII	CCWGG	2 cut(s)	65, 251
FaeI	CATG	2 cut(s)	175, 431
FaiI	YATR	4 cut(s)	173, 429, 483, 533
FaqI	GGGAC	1 cut(s)	326
FatI	CATG	2 cut(s)	171, 427
FauI	CCCGC	2 cut(s)	281, 519
Fnu4HI	GCNGC	2 cut(s)	54, 249
FokI	GGATG	1 cut(s)	512
Fsp4HI	GCNGC	2 cut(s)	54, 249
GlaI	GCGC	1 cut(s)	357
GluI	GCNGC	2 cut(s)	54, 249
GsaI	CCCAGC	1 cut(s)	338
HaeII	RGCGCY	1 cut(s)	359
HaeIII	GGCC	2 cut(s)	39, 53
HapII	CCGG	5 cut(s)	9, 36, 130, 157, 316
HgaI	GACGC	1 cut(s)	128
HhaI	GCGC	1 cut(s)	358
Hin1II	CATG	2 cut(s)	175, 431
Hin6I	GCGC	1 cut(s)	356
HinP1I	GCGC	1 cut(s)	356
HinfI	GANTC	2 cut(s)	12, 473
HpaII	CCGG	5 cut(s)	9, 36, 130, 157, 316
HphI	GGTGA	1 cut(s)	355
Hpy166II	GTNNAC	1 cut(s)	6
Hpy188I	TCNGA	4 cut(s)	73, 82, 118, 499
Hpy188III	TCNNGA	4 cut(s)	16, 139, 322, 506
Hpy8I	GTNNAC	1 cut(s)	6
Hpy99I	CGWCG	7 cut(s)	122, 127, 281, 284, 287, 389, 392
HpyCH4III	ACNGT	1 cut(s)	349
HpyCH4IV	ACGT	3 cut(s)	285, 372, 384
HpyF10VI	GCNNNNNNNGC	1 cut(s)	53
HpyF3I	CTNAG	2 cut(s)	95, 197
HpySE526I	ACGT	3 cut(s)	285, 372, 384
Hsp92II	CATG	2 cut(s)	175, 431
HspAI	GCGC	1 cut(s)	356
KroI	GCCGGC	1 cut(s)	35
KroNI	GCCGGC	1 cut(s)	37
Kzo9I	GATC	2 cut(s)	451, 502
LguI	GCTCTTC	1 cut(s)	140
MaeII	ACGT	3 cut(s)	285, 372, 384
MaeIII	GTNAC	2 cut(s)	16, 343
MalI	GATC	2 cut(s)	453, 504
MboI	GATC	2 cut(s)	451, 502
MboII	GAAGA	7 cut(s)	127, 184, 223, 235, 250, 253, 286
MflI	RGATCY	1 cut(s)	451
MhlI	GDGCHC	2 cut(s)	446, 490
MluCI	AATT	1 cut(s)	74
MlyI	GAGTC	1 cut(s)	482
MmeI	TCCRAC	2 cut(s)	105, 141
MroNI	GCCGGC	1 cut(s)	35
MslI	CAYNNNNRTG	1 cut(s)	530
MspI	CCGG	5 cut(s)	9, 36, 130, 157, 316
MspR9I	CCNGG	4 cut(s)	67, 130, 253, 317
MvaI	CCWGG	2 cut(s)	67, 253
MvnI	CGCG	3 cut(s)	122, 276, 514
MwoI	GCNNNNNNNGC	1 cut(s)	53
NaeI	GCCGGC	1 cut(s)	37
NciI	CCSGG	2 cut(s)	130, 317
NdeII	GATC	2 cut(s)	451, 502
NgoMIV	GCCGGC	1 cut(s)	35
NlaIII	CATG	2 cut(s)	175, 431
NlaIV	GGNNCC	1 cut(s)	314
NmuCI	GTSAC	2 cut(s)	16, 343
PciSI	GCTCTTC	1 cut(s)	140
PcsI	WCGNNNNNNNCGW	2 cut(s)	174, 183
PdiI	GCCGGC	1 cut(s)	37
PfeI	GAWTC	1 cut(s)	12
PflFI	GACNNNGTC	1 cut(s)	317
PkrI	GCNGC	2 cut(s)	55, 250
PleI	GAGTC	1 cut(s)	481
PpsI	GAGTC	1 cut(s)	481
Psp6I	CCWGG	2 cut(s)	65, 251
PspFI	CCCAGC	1 cut(s)	334
PspGI	CCWGG	2 cut(s)	65, 251
PspN4I	GGNNCC	1 cut(s)	314
PspPI	GGNCC	2 cut(s)	69, 313
PsuI	RGATCY	1 cut(s)	451
PsyI	GACNNNGTC	1 cut(s)	317
RseI	CAYNNNNRTG	1 cut(s)	530
SapI	GCTCTTC	1 cut(s)	140
SatI	GCNGC	2 cut(s)	54, 249
Sau3AI	GATC	2 cut(s)	451, 502
Sau96I	GGNCC	2 cut(s)	69, 313
SchI	GAGTC	1 cut(s)	482
ScrFI	CCNGG	4 cut(s)	67, 130, 253, 317
SduI	GDGCHC	2 cut(s)	446, 490
SetI	ASST	4 cut(s)	87, 288, 375, 387
SinI	GGWCC	2 cut(s)	69, 313
SmiMI	CAYNNNNRTG	1 cut(s)	530
Sse9I	AATT	1 cut(s)	74
SsiI	CCGC	8 cut(s)	54, 61, 90, 249, 274, 410, 431, 512
StyD4I	CCNGG	4 cut(s)	65, 128, 251, 315
TaaI	ACNGT	1 cut(s)	349
TaiI	ACGT	3 cut(s)	288, 375, 387
TaqI	TCGA	1 cut(s)	146
TaqII	GACCGA	1 cut(s)	280
TasI	AATT	1 cut(s)	74
TauI	GCSGC	2 cut(s)	56, 251
TfiI	GAWTC	1 cut(s)	12
TscAI	CASTG	1 cut(s)	495
TseFI	GTSAC	2 cut(s)	16, 343
Tsp45I	GTSAC	2 cut(s)	16, 343
TspDTI	ATGAA	1 cut(s)	416
TspGWI	ACGGA	1 cut(s)	461
TspRI	CASTG	1 cut(s)	495
Tth111I	GACNNNGTC	1 cut(s)	317
VpaK11BI	GGWCC	2 cut(s)	69, 313
XapI	RAATTY	1 cut(s)	74
XcmI	CCANNNNNNNNNTGG	1 cut(s)	178

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.