Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0007628

Physical Location & Seq

Genomic Coordinates Forward (+)

61212087 .. 61214166

Gene Structure 2080 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000009959

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGTCCACCGGAATCGTCACCCGGTTCAAGGAAGCCGGCCAATCGGCGATGTCCGCCCACCGCCCCTTGTCCGAATTCGCCGACCCCACCGCCCTCAGCCTCCCTTCAAACCTCTCCGACGCCACGACCCGGCTCTTCCAGAACCTGACCCATTTCCGGTCCAACTACGCCATGGTCCTCTTGGTCGTCCTCTTCCTCAGCCTCATGTACCACCCGGTCTCCATCATCGTCTTCCTCATCGTCTTCGCCGCCTGGGTCTTCTTCTACTTCTCCCGCGACGACGAGCTCGTCGTGTTCGGGTTTCCGGTCGGGGACCGGGTCGTGATGGCCGTGCTGGGAGTGGTGACTGTGGTGGCTTTGGTGTTGACGCACGTGTGGTTAAACGTCGTCGTTTCGGCGGTGGTTGGGGTGGTCTTGTGGGAATTACACCATTATGTGATCATGGTGGTGGTGTTCTTGAGATTTGATGAGATGGTAGTATTTCTTCGTCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006810 GO:0008150 GO:0012505 GO:0016032 GO:0016192 GO:0040011 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044000 GO:0044403 GO:0044419 GO:0044424 GO:0044444 GO:0044464 GO:0044766 GO:0046739 GO:0046794 GO:0051179 GO:0051234 GO:0051701 GO:0051704 GO:0051814 GO:0052126 GO:0052192 GO:1902579

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PRA1

Protein Analysis

165

Amino Acids

18.47

Weight (kDa)

6.27

Isoelectric Point (pI)

36.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PRA1	PF03208	16 - 143	6.5e-38	PRA1 family protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007628)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04260
fragaria_vesca	FvH4_4g02350 FvH4_4g02350
malus_domestica	MD05G1024600.v1.1 MD08G1228100.v1.1 MD13G1205600.v1.1 MD16G1207300.v1.1
prunus_persica	Prupe.1G028100_v2.0.a1
pyrus_communis	pycom13g17840 pycom16g17430
rosa_chinensis	RchiOBHm_Chr4g0389731
rosa_laevigata	RLG00000009959
rosa_multiflora	Rmu_co8067152.1_g000001 Rmu_sc0000367.1_g000058 Rmu_sc0001336.1_g000076 Rmu_sc0003144.1_g000009 Rmu_sc0008048.1_g000008 Rmu_sc0010773.1_g000001 Rmu_sc0029928.1_g000001
rosa_roxburghii	Rroxscaffold_5G00335730
rosa_rugosa	Rorug03G0325000
rosa_samantha	Rh4CG031700 Rh7CG419100
rosa_wichuraiana	Rw4G002240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	287
AccII	CGCG	1 cut(s)	276
AciI	CCGC	6 cut(s)	54, 61, 90, 249, 274, 398
AcoI	YGGCCR	2 cut(s)	37, 327
AcsI	RAATTY	1 cut(s)	74
AcvI	CACGTG	1 cut(s)	373
AcyI	GRCGYC	1 cut(s)	120
AfaI	GTAC	1 cut(s)	209
AfiI	CCNNNNNNNGG	3 cut(s)	28, 129, 156
AflIII	ACRYGT	1 cut(s)	372
AgsI	TTSAA	2 cut(s)	28, 108
AjnI	CCWGG	1 cut(s)	251
AluBI	AGCT	1 cut(s)	286
AluI	AGCT	1 cut(s)	286
Alw21I	GWGCWC	1 cut(s)	288
Alw26I	GTCTC	1 cut(s)	223
AlwNI	CAGNNNCTG	1 cut(s)	145
AoxI	GGCC	2 cut(s)	37, 327
ApoI	RAATTY	1 cut(s)	74
AspS9I	GGNCC	3 cut(s)	159, 175, 313
AsuC2I	CCSGG	4 cut(s)	22, 130, 215, 317
AsuHPI	GGTGA	2 cut(s)	10, 355
AvaII	GGWCC	3 cut(s)	159, 175, 313
BanII	GRGCYC	1 cut(s)	288
BarI	GAAGNNNNNNTAC	1 cut(s)	468
BbrPI	CACGTG	1 cut(s)	373
BbsI	GAAGAC	3 cut(s)	223, 235, 250
Bbv12I	GWGCWC	1 cut(s)	288
BbvCI	CCTCAGC	2 cut(s)	95, 197
BccI	CCATC	3 cut(s)	230, 319, 466
BceAI	ACGGC	1 cut(s)	314
BciT130I	CCWGG	1 cut(s)	253
BclI	TGATCA	1 cut(s)	438
BcnI	CCSGG	4 cut(s)	22, 130, 215, 317
BcoDI	GTCTC	1 cut(s)	223
BisI	GCNGC	1 cut(s)	249
BlsI	GCNGC	1 cut(s)	250
Bme1390I	CCNGG	5 cut(s)	22, 130, 215, 253, 317
Bme18I	GGWCC	3 cut(s)	159, 175, 313
BmgT120I	GGNCC	3 cut(s)	159, 175, 313
BmiI	GGNNCC	1 cut(s)	314
BmrFI	CCNGG	5 cut(s)	22, 130, 215, 253, 317
BpiI	GAAGAC	3 cut(s)	223, 235, 250
Bpu10I	CCTNAGC	2 cut(s)	95, 197
BpuEI	CTTGAG	1 cut(s)	478
BpuMI	CCSGG	4 cut(s)	22, 130, 215, 317
BsaAI	YACGTR	1 cut(s)	373
BsaHI	GRCGYC	1 cut(s)	120
BsaI	GGTCTC	1 cut(s)	223
BsaJI	CCNNGG	2 cut(s)	171, 252
BsaWI	WCCGGW	3 cut(s)	8, 156, 304
BsaXI	ACNNNNNCTCC	2 cut(s)	203, 233
Bsc4I	CCNNNNNNNGG	3 cut(s)	28, 129, 156
Bse118I	RCCGGY	1 cut(s)	35
BseBI	CCWGG	1 cut(s)	253
BseDI	CCNNGG	2 cut(s)	171, 252
BseLI	CCNNNNNNNGG	3 cut(s)	28, 129, 156
BseMII	CTCAG	2 cut(s)	109, 211
BseYI	CCCAGC	1 cut(s)	334
Bsh1236I	CGCG	1 cut(s)	276
Bsh1285I	CGRYCG	1 cut(s)	309
BshFI	GGCC	2 cut(s)	39, 329
BsiEI	CGRYCG	1 cut(s)	309
BsiHKAI	GWGCWC	1 cut(s)	288
BsiSI	CCGG	8 cut(s)	9, 22, 36, 130, 157, 215, 305, 316
BslFI	GGGAC	1 cut(s)	326
BslI	CCNNNNNNNGG	3 cut(s)	28, 129, 156
BsmAI	GTCTC	1 cut(s)	223
BsmFI	GGGAC	1 cut(s)	326
BsnI	GGCC	2 cut(s)	39, 329
Bso31I	GGTCTC	1 cut(s)	223
Bsp1286I	GDGCHC	1 cut(s)	288
Bsp143I	GATC	1 cut(s)	438
Bsp19I	CCATGG	1 cut(s)	171
BspACI	CCGC	6 cut(s)	54, 61, 90, 249, 274, 398
BspANI	GGCC	2 cut(s)	39, 329
BspCNI	CTCAG	2 cut(s)	108, 210
BspFNI	CGCG	1 cut(s)	276
BspLI	GGNNCC	1 cut(s)	314
BspQI	GCTCTTC	1 cut(s)	140
BspTNI	GGTCTC	1 cut(s)	223
BsrFI	RCCGGY	1 cut(s)	35
BssAI	RCCGGY	1 cut(s)	35
BssECI	CCNNGG	2 cut(s)	171, 252
BssMI	GATC	1 cut(s)	438
BssNI	GRCGYC	1 cut(s)	120
BssT1I	CCWWGG	1 cut(s)	171
Bst2UI	CCWGG	1 cut(s)	253
Bst4CI	ACNGT	1 cut(s)	349
Bst6I	CTCTTC	2 cut(s)	140, 197
BstACI	GRCGYC	1 cut(s)	120
BstBAI	YACGTR	1 cut(s)	373
BstC8I	GCNNGC	1 cut(s)	37
BstDEI	CTNAG	2 cut(s)	95, 197
BstDSI	CCRYGG	1 cut(s)	171
BstFNI	CGCG	1 cut(s)	276
BstKTI	GATC	1 cut(s)	441
BstMAI	GTCTC	1 cut(s)	223
BstMBI	GATC	1 cut(s)	438
BstMCI	CGRYCG	1 cut(s)	309
BstMWI	GCNNNNNNNGC	1 cut(s)	53
BstNI	CCWGG	1 cut(s)	253
BstSCI	CCNGG	5 cut(s)	20, 128, 213, 251, 315
BstUI	CGCG	1 cut(s)	276
BstV2I	GAAGAC	3 cut(s)	223, 235, 250
BsuRI	GGCC	2 cut(s)	39, 329
BtgI	CCRYGG	1 cut(s)	171
BtgZI	GCGATG	1 cut(s)	62
Cac8I	GCNNGC	1 cut(s)	37
CaiI	CAGNNNCTG	1 cut(s)	145
Cfr10I	RCCGGY	1 cut(s)	35
Cfr13I	GGNCC	3 cut(s)	159, 175, 313
CseI	GACGC	2 cut(s)	128, 376
Csp6I	GTAC	1 cut(s)	208
CviAII	CATG	3 cut(s)	172, 205, 442
CviJI	RGCY	8 cut(s)	35, 39, 99, 133, 201, 286, 329, 356
CviKI_1	RGCY	8 cut(s)	35, 39, 99, 133, 201, 286, 329, 356
CviQI	GTAC	1 cut(s)	208
DdeI	CTNAG	2 cut(s)	95, 197
DpnI	GATC	1 cut(s)	440
DpnII	GATC	1 cut(s)	438
DrdI	GACNNNNNNGTC	1 cut(s)	287
DseDI	GACNNNNNNGTC	1 cut(s)	287
EaeI	YGGCCR	2 cut(s)	37, 327
Eam1104I	CTCTTC	2 cut(s)	140, 197
EarI	CTCTTC	2 cut(s)	140, 197
EciI	GGCGGA	1 cut(s)	43
Ecl136II	GAGCTC	1 cut(s)	286
Eco130I	CCWWGG	1 cut(s)	171
Eco24I	GRGCYC	1 cut(s)	288
Eco31I	GGTCTC	1 cut(s)	223
Eco47I	GGWCC	3 cut(s)	159, 175, 313
Eco53kI	GAGCTC	1 cut(s)	286
Eco72I	CACGTG	1 cut(s)	373
EcoICRI	GAGCTC	1 cut(s)	286
EcoRI	GAATTC	1 cut(s)	74
EcoRII	CCWGG	1 cut(s)	251
EcoT14I	CCWWGG	1 cut(s)	171
EcoT38I	GRGCYC	1 cut(s)	288
ErhI	CCWWGG	1 cut(s)	171
FaeI	CATG	3 cut(s)	175, 208, 445
FaiI	YATR	5 cut(s)	173, 206, 435, 443, 493
FaqI	GGGAC	1 cut(s)	326
FatI	CATG	3 cut(s)	171, 204, 441
FauI	CCCGC	1 cut(s)	281
FbaI	TGATCA	1 cut(s)	438
Fnu4HI	GCNGC	1 cut(s)	249
FriOI	GRGCYC	1 cut(s)	288
Fsp4HI	GCNGC	1 cut(s)	249
GluI	GCNGC	1 cut(s)	249
GsaI	CCCAGC	1 cut(s)	338
HaeIII	GGCC	2 cut(s)	39, 329
HapII	CCGG	8 cut(s)	9, 22, 36, 130, 157, 215, 305, 316
HgaI	GACGC	2 cut(s)	128, 376
Hin1I	GRCGYC	1 cut(s)	120
Hin1II	CATG	3 cut(s)	175, 208, 445
HincII	GTYRAC	1 cut(s)	366
HindII	GTYRAC	1 cut(s)	366
HinfI	GANTC	1 cut(s)	12
HpaII	CCGG	8 cut(s)	9, 22, 36, 130, 157, 215, 305, 316
HphI	GGTGA	2 cut(s)	10, 355
Hpy166II	GTNNAC	2 cut(s)	6, 366
Hpy188I	TCNGA	2 cut(s)	73, 118
Hpy188III	TCNNGA	3 cut(s)	139, 322, 457
Hpy8I	GTNNAC	2 cut(s)	6, 366
Hpy99I	CGWCG	6 cut(s)	122, 281, 284, 293, 389, 392
HpyAV	CCTTC	1 cut(s)	114
HpyCH4III	ACNGT	1 cut(s)	349
HpyCH4IV	ACGT	2 cut(s)	372, 384
HpyF10VI	GCNNNNNNNGC	1 cut(s)	53
HpyF3I	CTNAG	2 cut(s)	95, 197
HpySE526I	ACGT	2 cut(s)	372, 384
Hsp92I	GRCGYC	1 cut(s)	120
Hsp92II	CATG	3 cut(s)	175, 208, 445
KroI	GCCGGC	1 cut(s)	35
KroNI	GCCGGC	1 cut(s)	37
Ksp22I	TGATCA	1 cut(s)	438
Kzo9I	GATC	1 cut(s)	438
LguI	GCTCTTC	1 cut(s)	140
MaeII	ACGT	2 cut(s)	372, 384
MaeIII	GTNAC	2 cut(s)	16, 343
MalI	GATC	1 cut(s)	440
MboI	GATC	1 cut(s)	438
MboII	GAAGA	7 cut(s)	127, 184, 223, 235, 250, 253, 476
MhlI	GDGCHC	1 cut(s)	288
MluCI	AATT	2 cut(s)	74, 422
MmeI	TCCRAC	2 cut(s)	141, 186
MnlI	CCTC	8 cut(s)	104, 110, 122, 188, 200, 206, 212, 245
MroNI	GCCGGC	1 cut(s)	35
MseI	TTAA	1 cut(s)	380
MslI	CAYNNNNRTG	2 cut(s)	432, 446
MspI	CCGG	8 cut(s)	9, 22, 36, 130, 157, 215, 305, 316
MspR9I	CCNGG	5 cut(s)	22, 130, 215, 253, 317
MvaI	CCWGG	1 cut(s)	253
MvnI	CGCG	1 cut(s)	276
MwoI	GCNNNNNNNGC	1 cut(s)	53
NaeI	GCCGGC	1 cut(s)	37
NciI	CCSGG	4 cut(s)	22, 130, 215, 317
NcoI	CCATGG	1 cut(s)	171
NdeII	GATC	1 cut(s)	438
NgoMIV	GCCGGC	1 cut(s)	35
NlaIII	CATG	3 cut(s)	175, 208, 445
NlaIV	GGNNCC	1 cut(s)	314
NmuCI	GTSAC	2 cut(s)	16, 343
PciSI	GCTCTTC	1 cut(s)	140
PcsI	WCGNNNNNNNCGW	3 cut(s)	285, 288, 327
PdiI	GCCGGC	1 cut(s)	37
PfeI	GAWTC	1 cut(s)	12
PflFI	GACNNNGTC	1 cut(s)	317
PkrI	GCNGC	1 cut(s)	250
PmaCI	CACGTG	1 cut(s)	373
PmlI	CACGTG	1 cut(s)	373
Ppu21I	YACGTR	1 cut(s)	373
Psp124BI	GAGCTC	1 cut(s)	288
Psp6I	CCWGG	1 cut(s)	251
PspCI	CACGTG	1 cut(s)	373
PspFI	CCCAGC	1 cut(s)	334
PspGI	CCWGG	1 cut(s)	251
PspN4I	GGNNCC	1 cut(s)	314
PspPI	GGNCC	3 cut(s)	159, 175, 313
PstNI	CAGNNNCTG	1 cut(s)	145
PsyI	GACNNNGTC	1 cut(s)	317
RsaI	GTAC	1 cut(s)	209
RsaNI	GTAC	1 cut(s)	208
RseI	CAYNNNNRTG	2 cut(s)	432, 446
SacI	GAGCTC	1 cut(s)	288
SapI	GCTCTTC	1 cut(s)	140
SaqAI	TTAA	1 cut(s)	380
SatI	GCNGC	1 cut(s)	249
Sau3AI	GATC	1 cut(s)	438
Sau96I	GGNCC	3 cut(s)	159, 175, 313
ScrFI	CCNGG	5 cut(s)	22, 130, 215, 253, 317
SduI	GDGCHC	1 cut(s)	288
SetI	ASST	5 cut(s)	114, 147, 288, 375, 387
SinI	GGWCC	3 cut(s)	159, 175, 313
SmiMI	CAYNNNNRTG	2 cut(s)	432, 446
SmlI	CTYRAG	1 cut(s)	457
SmoI	CTYRAG	1 cut(s)	457
Sse9I	AATT	2 cut(s)	74, 422
SsiI	CCGC	6 cut(s)	54, 61, 90, 249, 274, 398
SstI	GAGCTC	1 cut(s)	288
StyD4I	CCNGG	5 cut(s)	20, 128, 213, 251, 315
StyI	CCWWGG	1 cut(s)	171
TaaI	ACNGT	1 cut(s)	349
TaiI	ACGT	2 cut(s)	375, 387
TasI	AATT	2 cut(s)	74, 422
TauI	GCSGC	1 cut(s)	251
TfiI	GAWTC	1 cut(s)	12
Tru1I	TTAA	1 cut(s)	380
Tru9I	TTAA	1 cut(s)	380
TseFI	GTSAC	2 cut(s)	16, 343
Tsp45I	GTSAC	2 cut(s)	16, 343
Tth111I	GACNNNGTC	1 cut(s)	317
VpaK11BI	GGWCC	3 cut(s)	159, 175, 313
XapI	RAATTY	1 cut(s)	74
XcmI	CCANNNNNNNNNTGG	2 cut(s)	169, 178

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.