Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0007628

Physical Location & Seq

Genomic Coordinates Reverse (-)

19341790 .. 19344668

Gene Structure 2879 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1207300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGTCCGCCGGAATGGTGTCCCAGTTCAAGGAAGCCACCCAATCGGCGAGGGCCACGCTCCGGCCATGGGGTGAGCTCCTGGAACCCACCGCACTCAGACTCCCCTCCAATCTCTCCGCCGCGACGACCCGACTCGCCCAGAACTTGACCCACTTCCGGTCCAACTACGCCCTGATCGCCCTGATCGTGCTCTTCCTCAGCCTCCTCTACCACCCGTTCTCCATCATCGTCTTCTTGATCGTCTTCGCCGCGTGGCTCGTACTCTACTTCTCGCGTGACCAGCCCCTCGAGGTGTTCGGGTTTGCGGTCCCGGACCGGGTCGTGATGGTTGTTCTTGCCTTGGTGACGGTGGTGGCTCTGGTCCTCACTCACGTGTGGCTCAACGTCATCGTTTCGGGTGTGATTGGGGTCGTTTTGATAGGGTTGCACGCGGTGTTTAGGGGGACGGAGGGCCTTGTGATGGACGACCAAGAATCGCCGTATGGGGCTCTGCTCTCCGATGATGCTGACCCAAGTGGGAATTACACCATTATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006810 GO:0008150 GO:0012505 GO:0016032 GO:0016192 GO:0040011 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044000 GO:0044403 GO:0044419 GO:0044424 GO:0044444 GO:0044464 GO:0044766 GO:0046739 GO:0046794 GO:0051179 GO:0051234 GO:0051701 GO:0051704 GO:0051814 GO:0052126 GO:0052192 GO:1902579

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PRA1

Protein Analysis

179

Amino Acids

19.47

Weight (kDa)

5.42

Isoelectric Point (pI)

29.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PRA1	PF03208	16 - 156	8.4e-46	PRA1 family protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007628)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04260
fragaria_vesca	FvH4_4g02350 FvH4_4g02350
malus_domestica	MD05G1024600.v1.1 MD08G1228100.v1.1 MD13G1205600.v1.1 MD16G1207300.v1.1
prunus_persica	Prupe.1G028100_v2.0.a1
pyrus_communis	pycom13g17840 pycom16g17430
rosa_chinensis	RchiOBHm_Chr4g0389731
rosa_laevigata	RLG00000009959
rosa_multiflora	Rmu_co8067152.1_g000001 Rmu_sc0000367.1_g000058 Rmu_sc0001336.1_g000076 Rmu_sc0003144.1_g000009 Rmu_sc0008048.1_g000008 Rmu_sc0010773.1_g000001 Rmu_sc0029928.1_g000001
rosa_roxburghii	Rroxscaffold_5G00335730
rosa_rugosa	Rorug03G0325000
rosa_samantha	Rh4CG031700 Rh7CG419100
rosa_wichuraiana	Rw4G002240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	287
AccII	CGCG	4 cut(s)	122, 251, 274, 431
AciI	CCGC	7 cut(s)	6, 90, 117, 120, 249, 305, 431
AcoI	YGGCCR	1 cut(s)	62
AcvI	CACGTG	1 cut(s)	373
AdeI	CACNNNGTG	1 cut(s)	433
AfaI	GTAC	1 cut(s)	261
AfiI	CCNNNNNNNGG	6 cut(s)	28, 60, 67, 156, 316, 460
AflIII	ACRYGT	1 cut(s)	372
AgsI	TTSAA	1 cut(s)	28
AjnI	CCWGG	1 cut(s)	78
AleI	CACNNNNGTG	1 cut(s)	371
AluBI	AGCT	1 cut(s)	76
AluI	AGCT	1 cut(s)	76
Alw21I	GWGCWC	2 cut(s)	78, 192
Ama87I	CYCGRG	1 cut(s)	287
AoxI	GGCC	3 cut(s)	51, 62, 451
AspS9I	GGNCC	6 cut(s)	51, 159, 307, 313, 361, 451
AsuC2I	CCSGG	2 cut(s)	311, 317
AsuHPI	GGTGA	2 cut(s)	83, 355
AvaI	CYCGRG	1 cut(s)	287
AvaII	GGWCC	4 cut(s)	159, 307, 313, 361
BanII	GRGCYC	2 cut(s)	78, 490
BbrPI	CACGTG	1 cut(s)	373
BbsI	GAAGAC	2 cut(s)	223, 235
Bbv12I	GWGCWC	2 cut(s)	78, 192
BbvCI	CCTCAGC	1 cut(s)	197
BccI	CCATC	3 cut(s)	230, 319, 454
BceAI	ACGGC	1 cut(s)	463
BciT130I	CCWGG	1 cut(s)	80
BcnI	CCSGG	2 cut(s)	311, 317
BisI	GCNGC	2 cut(s)	120, 249
BlsI	GCNGC	2 cut(s)	121, 250
Bme1390I	CCNGG	3 cut(s)	80, 311, 317
Bme18I	GGWCC	4 cut(s)	159, 307, 313, 361
BmeT110I	CYCGRG	1 cut(s)	287
BmgT120I	GGNCC	6 cut(s)	51, 159, 307, 313, 361, 451
BmiI	GGNNCC	2 cut(s)	84, 309
BmrFI	CCNGG	3 cut(s)	80, 311, 317
BmrI	ACTGGG	1 cut(s)	16
BmsI	GCATC	1 cut(s)	493
BmuI	ACTGGG	1 cut(s)	16
BpiI	GAAGAC	2 cut(s)	223, 235
Bpu10I	CCTNAGC	1 cut(s)	197
BpuMI	CCSGG	2 cut(s)	311, 317
BsaAI	YACGTR	1 cut(s)	373
BsaJI	CCNNGG	2 cut(s)	65, 339
BsaWI	WCCGGW	1 cut(s)	156
BsaXI	ACNNNNNCTCC	4 cut(s)	84, 114, 203, 233
Bsc4I	CCNNNNNNNGG	6 cut(s)	28, 60, 67, 156, 316, 460
Bse1I	ACTGG	1 cut(s)	22
BseBI	CCWGG	1 cut(s)	80
BseDI	CCNNGG	2 cut(s)	65, 339
BseLI	CCNNNNNNNGG	6 cut(s)	28, 60, 67, 156, 316, 460
BseMII	CTCAG	2 cut(s)	109, 211
BseNI	ACTGG	1 cut(s)	22
BseRI	GAGGAG	1 cut(s)	194
Bsh1236I	CGCG	4 cut(s)	122, 251, 274, 431
BshFI	GGCC	3 cut(s)	53, 64, 453
BsiHKAI	GWGCWC	2 cut(s)	78, 192
BsiHKCI	CYCGRG	1 cut(s)	287
BsiSI	CCGG	5 cut(s)	9, 61, 157, 311, 316
BslFI	GGGAC	3 cut(s)	4, 293, 457
BslI	CCNNNNNNNGG	6 cut(s)	28, 60, 67, 156, 316, 460
BsmFI	GGGAC	3 cut(s)	4, 293, 457
BsnI	GGCC	3 cut(s)	53, 64, 453
BsoBI	CYCGRG	1 cut(s)	287
Bsp1286I	GDGCHC	3 cut(s)	78, 192, 490
Bsp143I	GATC	3 cut(s)	174, 183, 237
Bsp19I	CCATGG	1 cut(s)	65
BspACI	CCGC	7 cut(s)	6, 90, 117, 120, 249, 305, 431
BspANI	GGCC	3 cut(s)	53, 64, 453
BspCNI	CTCAG	2 cut(s)	108, 210
BspFNI	CGCG	4 cut(s)	122, 251, 274, 431
BspLI	GGNNCC	2 cut(s)	84, 309
BspQI	GCTCTTC	1 cut(s)	197
BsrI	ACTGG	1 cut(s)	22
BssECI	CCNNGG	2 cut(s)	65, 339
BssMI	GATC	3 cut(s)	174, 183, 237
BssT1I	CCWWGG	2 cut(s)	65, 339
Bst2UI	CCWGG	1 cut(s)	80
Bst4CI	ACNGT	1 cut(s)	349
Bst6I	CTCTTC	1 cut(s)	197
BstBAI	YACGTR	1 cut(s)	373
BstC8I	GCNNGC	1 cut(s)	429
BstDEI	CTNAG	2 cut(s)	95, 197
BstDSI	CCRYGG	1 cut(s)	65
BstFNI	CGCG	4 cut(s)	122, 251, 274, 431
BstKTI	GATC	3 cut(s)	177, 186, 240
BstMBI	GATC	3 cut(s)	174, 183, 237
BstMWI	GCNNNNNNNGC	2 cut(s)	176, 280
BstNI	CCWGG	1 cut(s)	80
BstSCI	CCNGG	3 cut(s)	78, 309, 315
BstUI	CGCG	4 cut(s)	122, 251, 274, 431
BstV2I	GAAGAC	2 cut(s)	223, 235
BsuRI	GGCC	3 cut(s)	53, 64, 453
BtgI	CCRYGG	1 cut(s)	65
Cac8I	GCNNGC	1 cut(s)	429
Cfr13I	GGNCC	6 cut(s)	51, 159, 307, 313, 361, 451
CpoI	CGGWCCG	1 cut(s)	313
Csp6I	GTAC	1 cut(s)	260
CspI	CGGWCCG	1 cut(s)	313
CviAII	CATG	1 cut(s)	66
CviQI	GTAC	1 cut(s)	260
DdeI	CTNAG	2 cut(s)	95, 197
DpnI	GATC	3 cut(s)	176, 185, 239
DpnII	GATC	3 cut(s)	174, 183, 237
DraIII	CACNNNGTG	1 cut(s)	433
EaeI	YGGCCR	1 cut(s)	62
Eam1104I	CTCTTC	1 cut(s)	197
EarI	CTCTTC	1 cut(s)	197
EciI	GGCGGA	1 cut(s)	106
Ecl136II	GAGCTC	1 cut(s)	76
Eco130I	CCWWGG	2 cut(s)	65, 339
Eco24I	GRGCYC	2 cut(s)	78, 490
Eco47I	GGWCC	4 cut(s)	159, 307, 313, 361
Eco53kI	GAGCTC	1 cut(s)	76
Eco72I	CACGTG	1 cut(s)	373
Eco88I	CYCGRG	1 cut(s)	287
EcoICRI	GAGCTC	1 cut(s)	76
EcoO109I	RGGNCCY	1 cut(s)	451
EcoRII	CCWGG	1 cut(s)	78
EcoT14I	CCWWGG	2 cut(s)	65, 339
EcoT38I	GRGCYC	2 cut(s)	78, 490
ErhI	CCWWGG	2 cut(s)	65, 339
FaeI	CATG	1 cut(s)	69
FaiI	YATR	3 cut(s)	67, 483, 533
FaqI	GGGAC	3 cut(s)	4, 293, 457
FatI	CATG	1 cut(s)	65
Fnu4HI	GCNGC	2 cut(s)	120, 249
FriOI	GRGCYC	2 cut(s)	78, 490
Fsp4HI	GCNGC	2 cut(s)	120, 249
GluI	GCNGC	2 cut(s)	120, 249
HaeIII	GGCC	3 cut(s)	53, 64, 453
HapII	CCGG	5 cut(s)	9, 61, 157, 311, 316
Hin1II	CATG	1 cut(s)	69
HinfI	GANTC	3 cut(s)	99, 132, 473
HpaII	CCGG	5 cut(s)	9, 61, 157, 311, 316
HphI	GGTGA	2 cut(s)	83, 355
Hpy188I	TCNGA	2 cut(s)	98, 499
Hpy188III	TCNNGA	2 cut(s)	235, 322
Hpy99I	CGWCG	1 cut(s)	127
HpyCH4III	ACNGT	1 cut(s)	349
HpyCH4IV	ACGT	2 cut(s)	372, 384
HpyCH4V	TGCA	1 cut(s)	427
HpyF10VI	GCNNNNNNNGC	2 cut(s)	176, 280
HpyF3I	CTNAG	2 cut(s)	95, 197
HpySE526I	ACGT	2 cut(s)	372, 384
Hsp92II	CATG	1 cut(s)	69
Kzo9I	GATC	3 cut(s)	174, 183, 237
LguI	GCTCTTC	1 cut(s)	197
LmnI	GCTCC	2 cut(s)	63, 81
LweI	GCATC	1 cut(s)	493
MaeII	ACGT	2 cut(s)	372, 384
MaeIII	GTNAC	2 cut(s)	275, 343
MalI	GATC	3 cut(s)	176, 185, 239
MboI	GATC	3 cut(s)	174, 183, 237
MboII	GAAGA	3 cut(s)	184, 223, 235
MhlI	GDGCHC	3 cut(s)	78, 192, 490
MluCI	AATT	1 cut(s)	520
MlyI	GAGTC	2 cut(s)	93, 126
MmeI	TCCRAC	1 cut(s)	186
MnlI	CCTC	9 cut(s)	42, 115, 206, 212, 215, 283, 296, 374, 442
MslI	CAYNNNNRTG	2 cut(s)	371, 530
MspI	CCGG	5 cut(s)	9, 61, 157, 311, 316
MspR9I	CCNGG	3 cut(s)	80, 311, 317
MvaI	CCWGG	1 cut(s)	80
MvnI	CGCG	4 cut(s)	122, 251, 274, 431
MwoI	GCNNNNNNNGC	2 cut(s)	176, 280
NciI	CCSGG	2 cut(s)	311, 317
NcoI	CCATGG	1 cut(s)	65
NdeII	GATC	3 cut(s)	174, 183, 237
NlaIII	CATG	1 cut(s)	69
NlaIV	GGNNCC	2 cut(s)	84, 309
NmuCI	GTSAC	2 cut(s)	275, 343
OliI	CACNNNNGTG	1 cut(s)	371
PaeR7I	CTCGAG	1 cut(s)	287
PciSI	GCTCTTC	1 cut(s)	197
PcsI	WCGNNNNNNNCGW	1 cut(s)	183
PfeI	GAWTC	1 cut(s)	473
PflFI	GACNNNGTC	1 cut(s)	317
PfoI	TCCNGGA	2 cut(s)	78, 309
PkrI	GCNGC	2 cut(s)	121, 250
PleI	GAGTC	2 cut(s)	93, 126
PmaCI	CACGTG	1 cut(s)	373
PmlI	CACGTG	1 cut(s)	373
PpsI	GAGTC	2 cut(s)	93, 126
Ppu21I	YACGTR	1 cut(s)	373
Psp124BI	GAGCTC	1 cut(s)	78
Psp6I	CCWGG	1 cut(s)	78
PspCI	CACGTG	1 cut(s)	373
PspGI	CCWGG	1 cut(s)	78
PspN4I	GGNNCC	2 cut(s)	84, 309
PspPI	GGNCC	6 cut(s)	51, 159, 307, 313, 361, 451
PspXI	VCTCGAGB	1 cut(s)	287
PsyI	GACNNNGTC	1 cut(s)	317
RsaI	GTAC	1 cut(s)	261
RsaNI	GTAC	1 cut(s)	260
RseI	CAYNNNNRTG	2 cut(s)	371, 530
Rsr2I	CGGWCCG	1 cut(s)	313
RsrII	CGGWCCG	1 cut(s)	313
SacI	GAGCTC	1 cut(s)	78
SapI	GCTCTTC	1 cut(s)	197
SatI	GCNGC	2 cut(s)	120, 249
Sau3AI	GATC	3 cut(s)	174, 183, 237
Sau96I	GGNCC	6 cut(s)	51, 159, 307, 313, 361, 451
SchI	GAGTC	2 cut(s)	93, 126
ScrFI	CCNGG	3 cut(s)	80, 311, 317
SduI	GDGCHC	3 cut(s)	78, 192, 490
SetI	ASST	4 cut(s)	78, 294, 375, 387
SfaNI	GCATC	1 cut(s)	493
Sfr274I	CTCGAG	1 cut(s)	287
SinI	GGWCC	4 cut(s)	159, 307, 313, 361
SlaI	CTCGAG	1 cut(s)	287
SmiMI	CAYNNNNRTG	2 cut(s)	371, 530
SmlI	CTYRAG	1 cut(s)	287
SmoI	CTYRAG	1 cut(s)	287
Sse9I	AATT	1 cut(s)	520
SsiI	CCGC	7 cut(s)	6, 90, 117, 120, 249, 305, 431
SstI	GAGCTC	1 cut(s)	78
StyD4I	CCNGG	3 cut(s)	78, 309, 315
StyI	CCWWGG	2 cut(s)	65, 339
TaaI	ACNGT	1 cut(s)	349
TaiI	ACGT	2 cut(s)	375, 387
TaqI	TCGA	1 cut(s)	288
TasI	AATT	1 cut(s)	520
TauI	GCSGC	2 cut(s)	122, 251
TfiI	GAWTC	1 cut(s)	473
TseFI	GTSAC	2 cut(s)	275, 343
Tsp45I	GTSAC	2 cut(s)	275, 343
TspGWI	ACGGA	1 cut(s)	461
Tth111I	GACNNNGTC	1 cut(s)	317
VpaK11BI	GGWCC	4 cut(s)	159, 307, 313, 361
XhoI	CTCGAG	1 cut(s)	287

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.