Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000367.1

Orthogroup ID

OG0007628

Physical Location & Seq

Genomic Coordinates Reverse (-)

251041 .. 251589

Gene Structure 549 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000367.1_g000058.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

atgtccaccggaatcatgacccgattgaaggaagccggccaatcgaacttgacccattttcgaaccacctacatcttggtcctcttggtcgagctcttcctcaacctcatctaccacccggtctccatcaatgtcttcttgatcgtcttggctgcccggatattttggagtgaagatgagttggagatgatggtaatgggtttcctaagattggattttgggaggttgaggaagctctggggagctatggcgttgatgaatgccgtgactgagttgggagaagatgagttgagtttaatgcttcatgttcaggttgtgttttgggttttggttatctatgatggctgtatgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006810 GO:0008150 GO:0012505 GO:0016032 GO:0016192 GO:0040011 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044000 GO:0044403 GO:0044419 GO:0044424 GO:0044444 GO:0044464 GO:0044766 GO:0046739 GO:0046794 GO:0051179 GO:0051234 GO:0051701 GO:0051704 GO:0051814 GO:0052126 GO:0052192 GO:1902579

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PRA1

Protein Analysis

117

Amino Acids

13.51

Weight (kDa)

5.21

Isoelectric Point (pI)

29.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007628)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04260
fragaria_vesca	FvH4_4g02350 FvH4_4g02350
malus_domestica	MD05G1024600.v1.1 MD08G1228100.v1.1 MD13G1205600.v1.1 MD16G1207300.v1.1
prunus_persica	Prupe.1G028100_v2.0.a1
pyrus_communis	pycom13g17840 pycom16g17430
rosa_chinensis	RchiOBHm_Chr4g0389731
rosa_laevigata	RLG00000009959
rosa_multiflora	Rmu_co8067152.1_g000001 Rmu_sc0000367.1_g000058 Rmu_sc0001336.1_g000076 Rmu_sc0003144.1_g000009 Rmu_sc0008048.1_g000008 Rmu_sc0010773.1_g000001 Rmu_sc0029928.1_g000001
rosa_roxburghii	Rroxscaffold_5G00335730
rosa_rugosa	Rorug03G0325000
rosa_samantha	Rh4CG031700 Rh7CG419100
rosa_wichuraiana	Rw4G002240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	37
AfiI	CCNNNNNNNGG	2 cut(s)	28, 211
AgsI	TTSAA	1 cut(s)	28
AluBI	AGCT	3 cut(s)	94, 235, 245
AluI	AGCT	3 cut(s)	94, 235, 245
Alw21I	GWGCWC	1 cut(s)	96
Alw26I	GTCTC	1 cut(s)	127
AoxI	GGCC	1 cut(s)	37
ApeKI	GCWGC	1 cut(s)	152
AspS9I	GGNCC	1 cut(s)	79
AsuC2I	CCSGG	2 cut(s)	119, 157
AsuII	TTCGAA	1 cut(s)	61
AvaII	GGWCC	1 cut(s)	79
BanII	GRGCYC	1 cut(s)	96
BbsI	GAAGAC	1 cut(s)	127
Bbv12I	GWGCWC	1 cut(s)	96
BbvI	GCAGC	1 cut(s)	139
BccI	CCATC	3 cut(s)	134, 184, 335
BceAI	ACGGC	1 cut(s)	248
BcnI	CCSGG	2 cut(s)	119, 157
BcoDI	GTCTC	1 cut(s)	127
BisI	GCNGC	1 cut(s)	153
BlsI	GCNGC	1 cut(s)	154
Bme1390I	CCNGG	2 cut(s)	119, 157
Bme18I	GGWCC	1 cut(s)	79
BmgT120I	GGNCC	1 cut(s)	79
BmrFI	CCNGG	2 cut(s)	119, 157
BpiI	GAAGAC	1 cut(s)	127
Bpu14I	TTCGAA	1 cut(s)	61
BpuMI	CCSGG	2 cut(s)	119, 157
BsaI	GGTCTC	1 cut(s)	127
BsaWI	WCCGGW	1 cut(s)	8
BsaXI	ACNNNNNCTCC	2 cut(s)	107, 137
Bsc4I	CCNNNNNNNGG	2 cut(s)	28, 211
Bse118I	RCCGGY	1 cut(s)	35
BseLI	CCNNNNNNNGG	2 cut(s)	28, 211
BseMII	CTCAG	1 cut(s)	261
BseXI	GCAGC	1 cut(s)	139
BshFI	GGCC	1 cut(s)	39
BsiHKAI	GWGCWC	1 cut(s)	96
BsiSI	CCGG	4 cut(s)	9, 36, 119, 157
BslI	CCNNNNNNNGG	2 cut(s)	28, 211
BsmAI	GTCTC	1 cut(s)	127
BsmI	GAATGC	1 cut(s)	265
BsnI	GGCC	1 cut(s)	39
Bso31I	GGTCTC	1 cut(s)	127
Bsp119I	TTCGAA	1 cut(s)	61
Bsp1286I	GDGCHC	1 cut(s)	96
Bsp143I	GATC	1 cut(s)	141
BspANI	GGCC	1 cut(s)	39
BspCNI	CTCAG	1 cut(s)	262
BspHI	TCATGA	1 cut(s)	15
BspQI	GCTCTTC	1 cut(s)	101
BspT104I	TTCGAA	1 cut(s)	61
BspTNI	GGTCTC	1 cut(s)	127
BsrFI	RCCGGY	1 cut(s)	35
BssAI	RCCGGY	1 cut(s)	35
BssMI	GATC	1 cut(s)	141
Bst6I	CTCTTC	1 cut(s)	101
BstBI	TTCGAA	1 cut(s)	61
BstC8I	GCNNGC	1 cut(s)	37
BstDEI	CTNAG	2 cut(s)	206, 270
BstKTI	GATC	1 cut(s)	144
BstMAI	GTCTC	1 cut(s)	127
BstMBI	GATC	1 cut(s)	141
BstSCI	CCNGG	2 cut(s)	117, 155
BstV1I	GCAGC	1 cut(s)	139
BstV2I	GAAGAC	1 cut(s)	127
BsuRI	GGCC	1 cut(s)	39
Cac8I	GCNNGC	1 cut(s)	37
CciI	TCATGA	1 cut(s)	15
Cfr10I	RCCGGY	1 cut(s)	35
Cfr13I	GGNCC	1 cut(s)	79
CviAII	CATG	2 cut(s)	16, 305
CviJI	RGCY	7 cut(s)	35, 39, 94, 152, 235, 245, 345
CviKI_1	RGCY	7 cut(s)	35, 39, 94, 152, 235, 245, 345
DdeI	CTNAG	2 cut(s)	206, 270
DpnI	GATC	1 cut(s)	143
DpnII	GATC	1 cut(s)	141
EaeI	YGGCCR	1 cut(s)	37
Eam1104I	CTCTTC	1 cut(s)	101
EarI	CTCTTC	1 cut(s)	101
Ecl136II	GAGCTC	1 cut(s)	94
Eco24I	GRGCYC	1 cut(s)	96
Eco31I	GGTCTC	1 cut(s)	127
Eco47I	GGWCC	1 cut(s)	79
Eco53kI	GAGCTC	1 cut(s)	94
EcoICRI	GAGCTC	1 cut(s)	94
EcoT38I	GRGCYC	1 cut(s)	96
FaeI	CATG	2 cut(s)	19, 308
FaiI	YATR	5 cut(s)	17, 248, 306, 339, 350
FatI	CATG	2 cut(s)	15, 304
Fnu4HI	GCNGC	1 cut(s)	153
FriOI	GRGCYC	1 cut(s)	96
Fsp4HI	GCNGC	1 cut(s)	153
GluI	GCNGC	1 cut(s)	153
HaeIII	GGCC	1 cut(s)	39
HapII	CCGG	4 cut(s)	9, 36, 119, 157
Hin1II	CATG	2 cut(s)	19, 308
HinfI	GANTC	1 cut(s)	12
HpaII	CCGG	4 cut(s)	9, 36, 119, 157
Hpy166II	GTNNAC	1 cut(s)	6
Hpy188III	TCNNGA	2 cut(s)	16, 139
Hpy8I	GTNNAC	1 cut(s)	6
HpyAV	CCTTC	1 cut(s)	22
HpyF3I	CTNAG	2 cut(s)	206, 270
Hsp92II	CATG	2 cut(s)	19, 308
KroI	GCCGGC	1 cut(s)	35
KroNI	GCCGGC	1 cut(s)	37
Kzo9I	GATC	1 cut(s)	141
LguI	GCTCTTC	1 cut(s)	101
LmnI	GCTCC	1 cut(s)	242
LpnPI	CCDG	6 cut(s)	22, 49, 132, 170, 223, 296
Lsp1109I	GCAGC	1 cut(s)	139
MaeIII	GTNAC	1 cut(s)	265
MalI	GATC	1 cut(s)	143
MboI	GATC	1 cut(s)	141
MboII	GAAGA	4 cut(s)	88, 127, 185, 293
MhlI	GDGCHC	1 cut(s)	96
MmeI	TCCRAC	1 cut(s)	162
MnlI	CCTC	5 cut(s)	92, 110, 116, 216, 222
MroNI	GCCGGC	1 cut(s)	35
MseI	TTAA	1 cut(s)	296
MspI	CCGG	4 cut(s)	9, 36, 119, 157
MspR9I	CCNGG	2 cut(s)	119, 157
Mva1269I	GAATGC	1 cut(s)	265
NaeI	GCCGGC	1 cut(s)	37
NciI	CCSGG	2 cut(s)	119, 157
NdeII	GATC	1 cut(s)	141
NgoMIV	GCCGGC	1 cut(s)	35
NlaIII	CATG	2 cut(s)	19, 308
NmuCI	GTSAC	1 cut(s)	265
NspV	TTCGAA	1 cut(s)	61
PagI	TCATGA	1 cut(s)	15
PciSI	GCTCTTC	1 cut(s)	101
PctI	GAATGC	1 cut(s)	265
PdiI	GCCGGC	1 cut(s)	37
PfeI	GAWTC	1 cut(s)	12
PkrI	GCNGC	1 cut(s)	154
Psp124BI	GAGCTC	1 cut(s)	96
PspPI	GGNCC	1 cut(s)	79
SacI	GAGCTC	1 cut(s)	96
SapI	GCTCTTC	1 cut(s)	101
SaqAI	TTAA	1 cut(s)	296
SatI	GCNGC	1 cut(s)	153
Sau3AI	GATC	1 cut(s)	141
Sau96I	GGNCC	1 cut(s)	79
ScrFI	CCNGG	2 cut(s)	119, 157
SduI	GDGCHC	1 cut(s)	96
SetI	ASST	7 cut(s)	71, 96, 108, 227, 237, 247, 315
SfuI	TTCGAA	1 cut(s)	61
SinI	GGWCC	1 cut(s)	79
SstI	GAGCTC	1 cut(s)	96
StyD4I	CCNGG	2 cut(s)	117, 155
TaqI	TCGA	3 cut(s)	44, 61, 90
TfiI	GAWTC	1 cut(s)	12
Tru1I	TTAA	1 cut(s)	296
Tru9I	TTAA	1 cut(s)	296
TseFI	GTSAC	1 cut(s)	265
TseI	GCWGC	1 cut(s)	152
Tsp45I	GTSAC	1 cut(s)	265
TspDTI	ATGAA	2 cut(s)	272, 293
VpaK11BI	GGWCC	1 cut(s)	79
XcmI	CCANNNNNNNNNTGG	1 cut(s)	73

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.