Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0007628

Physical Location & Seq

Genomic Coordinates Reverse (-)

1968259 .. 1971607

Gene Structure 3349 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G028100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGTCCACCGGATTGGTGTCCCAGGTGAAGGAAGTGAGCCAATCAGCGATTGCCACGCTTCGGCCATGGGGGGAGCTCCTGGAGCCGACCGCACTCAGCCTCCCCTCCAATCTCTCTGAGGTCACGACCCGACTGGCCCAGAACTTGACCCATTTCCGCTCTAACTACACCTTGGTCCTCTTGATCGTGCTCTTCCTCAGCCTCATATACCACCCGGTCTCCATCATCGTCTTCTTGATCATCTTTGCCGCGTGGCTCGTTCTCTACTTCTCACGTGACCAGCCCCTCGAGGTCTTTGGCTTTACTGTCGGAGACCGGGTTGTTATGGTTATTCTTGGGTTGGTTACGGTGTTGGCTCTGGTCTTGACCCATGTGTGGCTCAACGTCGTCGTTTCAGTGGTGATTGGGGTGGCTTTGGTTTCCTTGCACGCGGTGTTTAGGGGCACGGAGGACCTTGTTATGGATGACCAAGAATCTCCTTATGGCGCTCTGCTCTCGGATGATCAAGACCCAAGTGGGAATTATACCATTATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006810 GO:0008150 GO:0012505 GO:0016032 GO:0016192 GO:0040011 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044000 GO:0044403 GO:0044419 GO:0044424 GO:0044444 GO:0044464 GO:0044766 GO:0046739 GO:0046794 GO:0051179 GO:0051234 GO:0051701 GO:0051704 GO:0051814 GO:0052126 GO:0052192 GO:1902579

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PRA1

Protein Analysis

179

Amino Acids

19.59

Weight (kDa)

4.68

Isoelectric Point (pI)

32.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007628)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04260
fragaria_vesca	FvH4_4g02350 FvH4_4g02350
malus_domestica	MD05G1024600.v1.1 MD08G1228100.v1.1 MD13G1205600.v1.1 MD16G1207300.v1.1
prunus_persica	Prupe.1G028100_v2.0.a1
pyrus_communis	pycom13g17840 pycom16g17430
rosa_chinensis	RchiOBHm_Chr4g0389731
rosa_laevigata	RLG00000009959
rosa_multiflora	Rmu_co8067152.1_g000001 Rmu_sc0000367.1_g000058 Rmu_sc0001336.1_g000076 Rmu_sc0003144.1_g000009 Rmu_sc0008048.1_g000008 Rmu_sc0010773.1_g000001 Rmu_sc0029928.1_g000001
rosa_roxburghii	Rroxscaffold_5G00335730
rosa_rugosa	Rorug03G0325000
rosa_samantha	Rh4CG031700 Rh7CG419100
rosa_wichuraiana	Rw4G002240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	287
AccBSI	CCGCTC	1 cut(s)	159
AccII	CGCG	2 cut(s)	251, 431
AciI	CCGC	4 cut(s)	90, 157, 249, 431
AcoI	YGGCCR	1 cut(s)	62
AcvI	CACGTG	1 cut(s)	275
AdeI	CACNNNGTG	1 cut(s)	433
AfiI	CCNNNNNNNGG	4 cut(s)	28, 60, 375, 460
AjnI	CCWGG	2 cut(s)	21, 78
AluBI	AGCT	1 cut(s)	76
AluI	AGCT	1 cut(s)	76
Alw21I	GWGCWC	2 cut(s)	78, 192
Alw26I	GTCTC	2 cut(s)	223, 306
Ama87I	CYCGRG	1 cut(s)	287
AoxI	GGCC	2 cut(s)	62, 135
AspLEI	GCGC	1 cut(s)	488
AspS9I	GGNCC	3 cut(s)	136, 175, 451
AsuC2I	CCSGG	2 cut(s)	215, 317
AsuHPI	GGTGA	2 cut(s)	37, 412
AvaI	CYCGRG	1 cut(s)	287
AvaII	GGWCC	2 cut(s)	175, 451
BaeGI	GKGCMC	1 cut(s)	446
BanII	GRGCYC	1 cut(s)	78
BbrPI	CACGTG	1 cut(s)	275
BbsI	GAAGAC	1 cut(s)	223
Bbv12I	GWGCWC	2 cut(s)	78, 192
BbvCI	CCTCAGC	1 cut(s)	197
BccI	CCATC	1 cut(s)	230
BciT130I	CCWGG	2 cut(s)	23, 80
BclI	TGATCA	2 cut(s)	237, 502
BcnI	CCSGG	2 cut(s)	215, 317
BcoDI	GTCTC	2 cut(s)	223, 306
BfoI	RGCGCY	1 cut(s)	489
BisI	GCNGC	1 cut(s)	249
BlsI	GCNGC	1 cut(s)	250
Bme1390I	CCNGG	4 cut(s)	23, 80, 215, 317
Bme18I	GGWCC	2 cut(s)	175, 451
BmeT110I	CYCGRG	1 cut(s)	287
BmgT120I	GGNCC	3 cut(s)	136, 175, 451
BmiI	GGNNCC	1 cut(s)	84
BmrFI	CCNGG	4 cut(s)	23, 80, 215, 317
BpiI	GAAGAC	1 cut(s)	223
BpmI	CTGGAG	1 cut(s)	101
Bpu10I	CCTNAGC	1 cut(s)	197
BpuMI	CCSGG	2 cut(s)	215, 317
BsaAI	YACGTR	1 cut(s)	275
BsaI	GGTCTC	2 cut(s)	223, 306
BsaJI	CCNNGG	3 cut(s)	21, 65, 171
BsaWI	WCCGGW	1 cut(s)	8
BsaXI	ACNNNNNCTCC	6 cut(s)	84, 114, 203, 233, 303, 333
Bsc4I	CCNNNNNNNGG	4 cut(s)	28, 60, 375, 460
Bse1I	ACTGG	1 cut(s)	138
BseBI	CCWGG	2 cut(s)	23, 80
BseDI	CCNNGG	3 cut(s)	21, 65, 171
BseGI	GGATG	2 cut(s)	469, 505
BseLI	CCNNNNNNNGG	4 cut(s)	28, 60, 375, 460
BseMII	CTCAG	3 cut(s)	108, 109, 211
BseNI	ACTGG	1 cut(s)	138
BseSI	GKGCMC	1 cut(s)	446
Bsh1236I	CGCG	2 cut(s)	251, 431
Bsh1285I	CGRYCG	1 cut(s)	90
BshFI	GGCC	2 cut(s)	64, 137
BsiEI	CGRYCG	1 cut(s)	90
BsiHKAI	GWGCWC	2 cut(s)	78, 192
BsiHKCI	CYCGRG	1 cut(s)	287
BsiSI	CCGG	3 cut(s)	9, 215, 316
BslFI	GGGAC	1 cut(s)	4
BslI	CCNNNNNNNGG	4 cut(s)	28, 60, 375, 460
BsmAI	GTCTC	2 cut(s)	223, 306
BsmFI	GGGAC	1 cut(s)	4
BsnI	GGCC	2 cut(s)	64, 137
Bso31I	GGTCTC	2 cut(s)	223, 306
BsoBI	CYCGRG	1 cut(s)	287
Bsp1286I	GDGCHC	3 cut(s)	78, 192, 446
Bsp143I	GATC	3 cut(s)	183, 237, 502
Bsp19I	CCATGG	1 cut(s)	65
BspACI	CCGC	4 cut(s)	90, 157, 249, 431
BspANI	GGCC	2 cut(s)	64, 137
BspCNI	CTCAG	3 cut(s)	108, 109, 210
BspFNI	CGCG	2 cut(s)	251, 431
BspLI	GGNNCC	1 cut(s)	84
BspQI	GCTCTTC	1 cut(s)	197
BspTNI	GGTCTC	2 cut(s)	223, 306
BsrBI	CCGCTC	1 cut(s)	159
BsrI	ACTGG	1 cut(s)	138
BssECI	CCNNGG	3 cut(s)	21, 65, 171
BssMI	GATC	3 cut(s)	183, 237, 502
BssT1I	CCWWGG	2 cut(s)	65, 171
Bst2UI	CCWGG	2 cut(s)	23, 80
Bst4CI	ACNGT	2 cut(s)	307, 349
Bst6I	CTCTTC	1 cut(s)	197
BstBAI	YACGTR	1 cut(s)	275
BstC8I	GCNNGC	1 cut(s)	429
BstDEI	CTNAG	3 cut(s)	95, 117, 197
BstDSI	CCRYGG	1 cut(s)	65
BstF5I	GGATG	2 cut(s)	469, 505
BstFNI	CGCG	2 cut(s)	251, 431
BstH2I	RGCGCY	1 cut(s)	489
BstHHI	GCGC	1 cut(s)	488
BstKTI	GATC	3 cut(s)	186, 240, 505
BstMAI	GTCTC	2 cut(s)	223, 306
BstMBI	GATC	3 cut(s)	183, 237, 502
BstMCI	CGRYCG	1 cut(s)	90
BstMWI	GCNNNNNNNGC	1 cut(s)	82
BstNI	CCWGG	2 cut(s)	23, 80
BstSCI	CCNGG	4 cut(s)	21, 78, 213, 315
BstSLI	GKGCMC	1 cut(s)	446
BstUI	CGCG	2 cut(s)	251, 431
BstV2I	GAAGAC	1 cut(s)	223
BstXI	CCANNNNNNTGG	1 cut(s)	13
BsuRI	GGCC	2 cut(s)	64, 137
BtgI	CCRYGG	1 cut(s)	65
BtsCI	GGATG	2 cut(s)	469, 505
BtsIMutI	CAGTG	1 cut(s)	402
Cac8I	GCNNGC	1 cut(s)	429
CfoI	GCGC	1 cut(s)	488
Cfr13I	GGNCC	3 cut(s)	136, 175, 451
CviAII	CATG	2 cut(s)	66, 371
DdeI	CTNAG	3 cut(s)	95, 117, 197
DpnI	GATC	3 cut(s)	185, 239, 504
DpnII	GATC	3 cut(s)	183, 237, 502
DraIII	CACNNNGTG	1 cut(s)	433
EaeI	YGGCCR	1 cut(s)	62
Eam1104I	CTCTTC	1 cut(s)	197
EarI	CTCTTC	1 cut(s)	197
Ecl136II	GAGCTC	1 cut(s)	76
Eco130I	CCWWGG	2 cut(s)	65, 171
Eco24I	GRGCYC	1 cut(s)	78
Eco31I	GGTCTC	2 cut(s)	223, 306
Eco47I	GGWCC	2 cut(s)	175, 451
Eco53kI	GAGCTC	1 cut(s)	76
Eco72I	CACGTG	1 cut(s)	275
Eco88I	CYCGRG	1 cut(s)	287
EcoICRI	GAGCTC	1 cut(s)	76
EcoO109I	RGGNCCY	1 cut(s)	451
EcoRII	CCWGG	2 cut(s)	21, 78
EcoT14I	CCWWGG	2 cut(s)	65, 171
EcoT38I	GRGCYC	1 cut(s)	78
ErhI	CCWWGG	2 cut(s)	65, 171
FaeI	CATG	2 cut(s)	69, 374
FaiI	YATR	9 cut(s)	67, 206, 208, 326, 372, 461, 483, 525, 533
FaqI	GGGAC	1 cut(s)	4
FatI	CATG	2 cut(s)	65, 370
FbaI	TGATCA	2 cut(s)	237, 502
Fnu4HI	GCNGC	1 cut(s)	249
FokI	GGATG	2 cut(s)	476, 512
FriOI	GRGCYC	1 cut(s)	78
Fsp4HI	GCNGC	1 cut(s)	249
GlaI	GCGC	1 cut(s)	487
GluI	GCNGC	1 cut(s)	249
GsuI	CTGGAG	1 cut(s)	101
HaeII	RGCGCY	1 cut(s)	489
HaeIII	GGCC	2 cut(s)	64, 137
HapII	CCGG	3 cut(s)	9, 215, 316
HhaI	GCGC	1 cut(s)	488
Hin1II	CATG	2 cut(s)	69, 374
Hin6I	GCGC	1 cut(s)	486
HinP1I	GCGC	1 cut(s)	486
HinfI	GANTC	1 cut(s)	473
HpaII	CCGG	3 cut(s)	9, 215, 316
HphI	GGTGA	2 cut(s)	37, 412
Hpy166II	GTNNAC	1 cut(s)	6
Hpy188I	TCNGA	3 cut(s)	118, 311, 499
Hpy188III	TCNNGA	5 cut(s)	124, 181, 235, 364, 506
Hpy8I	GTNNAC	1 cut(s)	6
Hpy99I	CGWCG	2 cut(s)	389, 392
HpyAV	CCTTC	1 cut(s)	22
HpyCH4III	ACNGT	2 cut(s)	307, 349
HpyCH4IV	ACGT	2 cut(s)	274, 384
HpyCH4V	TGCA	1 cut(s)	427
HpyF10VI	GCNNNNNNNGC	1 cut(s)	82
HpyF3I	CTNAG	3 cut(s)	95, 117, 197
HpySE526I	ACGT	2 cut(s)	274, 384
Hsp92II	CATG	2 cut(s)	69, 374
HspAI	GCGC	1 cut(s)	486
Ksp22I	TGATCA	2 cut(s)	237, 502
Kzo9I	GATC	3 cut(s)	183, 237, 502
LguI	GCTCTTC	1 cut(s)	197
LmnI	GCTCC	3 cut(s)	73, 81, 82
MaeII	ACGT	2 cut(s)	274, 384
MaeIII	GTNAC	3 cut(s)	121, 275, 343
MalI	GATC	3 cut(s)	185, 239, 504
MbiI	CCGCTC	1 cut(s)	159
MboI	GATC	3 cut(s)	183, 237, 502
MboII	GAAGA	2 cut(s)	184, 223
MhlI	GDGCHC	3 cut(s)	78, 192, 446
MluCI	AATT	1 cut(s)	520
MmeI	TCCRAC	1 cut(s)	289
MnlI	CCTC	9 cut(s)	110, 112, 115, 188, 206, 212, 283, 296, 442
MspI	CCGG	3 cut(s)	9, 215, 316
MspR9I	CCNGG	4 cut(s)	23, 80, 215, 317
MvaI	CCWGG	2 cut(s)	23, 80
MvnI	CGCG	2 cut(s)	251, 431
MwoI	GCNNNNNNNGC	1 cut(s)	82
NciI	CCSGG	2 cut(s)	215, 317
NcoI	CCATGG	1 cut(s)	65
NdeII	GATC	3 cut(s)	183, 237, 502
NlaIII	CATG	2 cut(s)	69, 374
NlaIV	GGNNCC	1 cut(s)	84
NmuCI	GTSAC	2 cut(s)	121, 275
PaeR7I	CTCGAG	1 cut(s)	287
PciSI	GCTCTTC	1 cut(s)	197
PfeI	GAWTC	1 cut(s)	473
PfoI	TCCNGGA	1 cut(s)	78
PkrI	GCNGC	1 cut(s)	250
PmaCI	CACGTG	1 cut(s)	275
PmlI	CACGTG	1 cut(s)	275
Ppu21I	YACGTR	1 cut(s)	275
PpuMI	RGGWCCY	1 cut(s)	451
Psp124BI	GAGCTC	1 cut(s)	78
Psp5II	RGGWCCY	1 cut(s)	451
Psp6I	CCWGG	2 cut(s)	21, 78
PspCI	CACGTG	1 cut(s)	275
PspGI	CCWGG	2 cut(s)	21, 78
PspN4I	GGNNCC	1 cut(s)	84
PspPI	GGNCC	3 cut(s)	136, 175, 451
PspPPI	RGGWCCY	1 cut(s)	451
PspXI	VCTCGAGB	1 cut(s)	287
SacI	GAGCTC	1 cut(s)	78
SapI	GCTCTTC	1 cut(s)	197
SatI	GCNGC	1 cut(s)	249
Sau3AI	GATC	3 cut(s)	183, 237, 502
Sau96I	GGNCC	3 cut(s)	136, 175, 451
ScrFI	CCNGG	4 cut(s)	23, 80, 215, 317
SduI	GDGCHC	3 cut(s)	78, 192, 446
SetI	ASST	8 cut(s)	27, 78, 123, 173, 277, 294, 387, 456
Sfr274I	CTCGAG	1 cut(s)	287
SinI	GGWCC	2 cut(s)	175, 451
SlaI	CTCGAG	1 cut(s)	287
SmlI	CTYRAG	1 cut(s)	287
SmoI	CTYRAG	1 cut(s)	287
Sse9I	AATT	1 cut(s)	520
SsiI	CCGC	4 cut(s)	90, 157, 249, 431
SstI	GAGCTC	1 cut(s)	78
StyD4I	CCNGG	4 cut(s)	21, 78, 213, 315
StyI	CCWWGG	2 cut(s)	65, 171
TaaI	ACNGT	2 cut(s)	307, 349
TaiI	ACGT	2 cut(s)	277, 387
TaqI	TCGA	1 cut(s)	288
TasI	AATT	1 cut(s)	520
TauI	GCSGC	1 cut(s)	251
TfiI	GAWTC	1 cut(s)	473
TscAI	CASTG	1 cut(s)	402
TseFI	GTSAC	2 cut(s)	121, 275
Tsp45I	GTSAC	2 cut(s)	121, 275
TspGWI	ACGGA	1 cut(s)	461
TspRI	CASTG	1 cut(s)	402
VpaK11BI	GGWCC	2 cut(s)	175, 451
XhoI	CTCGAG	1 cut(s)	287

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.