Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0007628

Physical Location & Seq

Genomic Coordinates Reverse (-)

3125300 .. 3125836

Gene Structure 537 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00335730.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGTCCACCGGAATCGTCACCCGGTTCAAGGAAGCCGGCCAATCGGCGATGTCCGCCCACCGACCCTTGTCCGAATTCGCCGACCCCACCGCCCTCAGCCTCCCTTCAAACCTCTCCGACGCCACGACCCGGCTCTTCCAGAACCTGACCCATTTCCGGTCCAACTACGCCATGGTCCTCTTGGTCGTCCTCTTCCTCAGCCTCATCTACCACCCCGTCTCCATCATCGTCTTCCTCATCGTCTTCGCCGCCTGGGTCTTCTTCTACTTCTCCCGCGACGACGAGCTCGTCGTGTTCGGGTTTCCGGTCGGGGACCGGGTCGTGATGGCCGTGCTGGGAGTGGTGACTGTGGTGGCTCTGGTGTTGACGCACGTGTGGTTGAACGTCGTCGTTTCGGCGGTGGTTGGGGTGGTCTTGGTTTGCCTTCATGCTGTGTTTAGAGGGACGGAGGATCTTGTTATGGAGGATAAAGAATCGCCTTATGGGGCTCTGCTTCAGGATGATGCTGACCCGAGTGGGAATTACACCATTATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006810 GO:0008150 GO:0012505 GO:0016032 GO:0016192 GO:0040011 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044000 GO:0044403 GO:0044419 GO:0044424 GO:0044444 GO:0044464 GO:0044766 GO:0046739 GO:0046794 GO:0051179 GO:0051234 GO:0051701 GO:0051704 GO:0051814 GO:0052126 GO:0052192 GO:1902579

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PRA1

Protein Analysis

178

Amino Acids

19.56

Weight (kDa)

4.98

Isoelectric Point (pI)

34.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PRA1	PF03208	16 - 156	3.3e-46	PRA1 family protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007628)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04260
fragaria_vesca	FvH4_4g02350 FvH4_4g02350
malus_domestica	MD05G1024600.v1.1 MD08G1228100.v1.1 MD13G1205600.v1.1 MD16G1207300.v1.1
prunus_persica	Prupe.1G028100_v2.0.a1
pyrus_communis	pycom13g17840 pycom16g17430
rosa_chinensis	RchiOBHm_Chr4g0389731
rosa_laevigata	RLG00000009959
rosa_multiflora	Rmu_co8067152.1_g000001 Rmu_sc0000367.1_g000058 Rmu_sc0001336.1_g000076 Rmu_sc0003144.1_g000009 Rmu_sc0008048.1_g000008 Rmu_sc0010773.1_g000001 Rmu_sc0029928.1_g000001
rosa_roxburghii	Rroxscaffold_5G00335730
rosa_rugosa	Rorug03G0325000
rosa_samantha	Rh4CG031700 Rh7CG419100
rosa_wichuraiana	Rw4G002240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	287
AccII	CGCG	1 cut(s)	276
AciI	CCGC	5 cut(s)	54, 90, 249, 274, 398
AclWI	GGATC	1 cut(s)	459
AcoI	YGGCCR	2 cut(s)	37, 327
AcsI	RAATTY	1 cut(s)	74
AcuI	CTGAAG	1 cut(s)	479
AcvI	CACGTG	1 cut(s)	373
AcyI	GRCGYC	1 cut(s)	120
AfiI	CCNNNNNNNGG	3 cut(s)	28, 129, 156
AflIII	ACRYGT	1 cut(s)	372
AgsI	TTSAA	3 cut(s)	28, 108, 382
AjnI	CCWGG	1 cut(s)	251
AluBI	AGCT	1 cut(s)	286
AluI	AGCT	1 cut(s)	286
Alw21I	GWGCWC	1 cut(s)	288
Alw26I	GTCTC	1 cut(s)	223
AlwI	GGATC	1 cut(s)	459
AlwNI	CAGNNNCTG	1 cut(s)	145
Ama87I	CYCGRG	1 cut(s)	511
AoxI	GGCC	2 cut(s)	37, 327
ApoI	RAATTY	1 cut(s)	74
AspS9I	GGNCC	3 cut(s)	159, 175, 313
AsuC2I	CCSGG	3 cut(s)	22, 130, 317
AsuHPI	GGTGA	2 cut(s)	10, 355
AvaI	CYCGRG	1 cut(s)	511
AvaII	GGWCC	3 cut(s)	159, 175, 313
BanII	GRGCYC	2 cut(s)	288, 490
BbrPI	CACGTG	1 cut(s)	373
BbsI	GAAGAC	3 cut(s)	223, 235, 250
Bbv12I	GWGCWC	1 cut(s)	288
BbvCI	CCTCAGC	2 cut(s)	95, 197
BccI	CCATC	2 cut(s)	230, 319
BceAI	ACGGC	1 cut(s)	314
BciT130I	CCWGG	1 cut(s)	253
BcnI	CCSGG	3 cut(s)	22, 130, 317
BcoDI	GTCTC	1 cut(s)	223
BisI	GCNGC	1 cut(s)	249
BlsI	GCNGC	1 cut(s)	250
Bme1390I	CCNGG	4 cut(s)	22, 130, 253, 317
Bme18I	GGWCC	3 cut(s)	159, 175, 313
BmeT110I	CYCGRG	1 cut(s)	511
BmgT120I	GGNCC	3 cut(s)	159, 175, 313
BmiI	GGNNCC	1 cut(s)	314
BmrFI	CCNGG	4 cut(s)	22, 130, 253, 317
BmsI	GCATC	1 cut(s)	493
BoxI	GACNNNNGTC	1 cut(s)	67
BpiI	GAAGAC	3 cut(s)	223, 235, 250
Bpu10I	CCTNAGC	2 cut(s)	95, 197
BpuMI	CCSGG	3 cut(s)	22, 130, 317
BsaAI	YACGTR	1 cut(s)	373
BsaHI	GRCGYC	1 cut(s)	120
BsaJI	CCNNGG	2 cut(s)	171, 252
BsaWI	WCCGGW	3 cut(s)	8, 156, 304
BsaXI	ACNNNNNCTCC	2 cut(s)	203, 233
Bsc4I	CCNNNNNNNGG	3 cut(s)	28, 129, 156
Bse118I	RCCGGY	1 cut(s)	35
BseBI	CCWGG	1 cut(s)	253
BseDI	CCNNGG	2 cut(s)	171, 252
BseGI	GGATG	1 cut(s)	505
BseLI	CCNNNNNNNGG	3 cut(s)	28, 129, 156
BseMII	CTCAG	2 cut(s)	109, 211
BseYI	CCCAGC	1 cut(s)	334
Bsh1236I	CGCG	1 cut(s)	276
Bsh1285I	CGRYCG	1 cut(s)	309
BshFI	GGCC	2 cut(s)	39, 329
BsiEI	CGRYCG	1 cut(s)	309
BsiHKAI	GWGCWC	1 cut(s)	288
BsiHKCI	CYCGRG	1 cut(s)	511
BsiSI	CCGG	7 cut(s)	9, 22, 36, 130, 157, 305, 316
BslFI	GGGAC	2 cut(s)	326, 457
BslI	CCNNNNNNNGG	3 cut(s)	28, 129, 156
BsmAI	GTCTC	1 cut(s)	223
BsmBI	CGTCTC	1 cut(s)	223
BsmFI	GGGAC	2 cut(s)	326, 457
BsnI	GGCC	2 cut(s)	39, 329
BsoBI	CYCGRG	1 cut(s)	511
Bsp1286I	GDGCHC	2 cut(s)	288, 490
Bsp143I	GATC	1 cut(s)	451
Bsp19I	CCATGG	1 cut(s)	171
BspACI	CCGC	5 cut(s)	54, 90, 249, 274, 398
BspANI	GGCC	2 cut(s)	39, 329
BspCNI	CTCAG	2 cut(s)	108, 210
BspFNI	CGCG	1 cut(s)	276
BspLI	GGNNCC	1 cut(s)	314
BspPI	GGATC	1 cut(s)	459
BspQI	GCTCTTC	1 cut(s)	140
BsrFI	RCCGGY	1 cut(s)	35
BssAI	RCCGGY	1 cut(s)	35
BssECI	CCNNGG	2 cut(s)	171, 252
BssMI	GATC	1 cut(s)	451
BssNI	GRCGYC	1 cut(s)	120
BssT1I	CCWWGG	1 cut(s)	171
Bst2UI	CCWGG	1 cut(s)	253
Bst4CI	ACNGT	1 cut(s)	349
Bst6I	CTCTTC	2 cut(s)	140, 197
BstACI	GRCGYC	1 cut(s)	120
BstBAI	YACGTR	1 cut(s)	373
BstC8I	GCNNGC	1 cut(s)	37
BstDEI	CTNAG	2 cut(s)	95, 197
BstDSI	CCRYGG	1 cut(s)	171
BstF5I	GGATG	1 cut(s)	505
BstFNI	CGCG	1 cut(s)	276
BstKTI	GATC	1 cut(s)	454
BstMAI	GTCTC	1 cut(s)	223
BstMBI	GATC	1 cut(s)	451
BstMCI	CGRYCG	1 cut(s)	309
BstMWI	GCNNNNNNNGC	1 cut(s)	53
BstNI	CCWGG	1 cut(s)	253
BstPAI	GACNNNNGTC	1 cut(s)	67
BstSCI	CCNGG	4 cut(s)	20, 128, 251, 315
BstUI	CGCG	1 cut(s)	276
BstV2I	GAAGAC	3 cut(s)	223, 235, 250
BstX2I	RGATCY	1 cut(s)	451
BstYI	RGATCY	1 cut(s)	451
BsuRI	GGCC	2 cut(s)	39, 329
BtgI	CCRYGG	1 cut(s)	171
BtgZI	GCGATG	1 cut(s)	62
BtsCI	GGATG	1 cut(s)	505
Cac8I	GCNNGC	1 cut(s)	37
CaiI	CAGNNNCTG	1 cut(s)	145
Cfr10I	RCCGGY	1 cut(s)	35
Cfr13I	GGNCC	3 cut(s)	159, 175, 313
CseI	GACGC	2 cut(s)	128, 376
CviAII	CATG	2 cut(s)	172, 428
CviJI	RGCY	9 cut(s)	35, 39, 99, 133, 201, 286, 329, 356, 488
CviKI_1	RGCY	9 cut(s)	35, 39, 99, 133, 201, 286, 329, 356, 488
DdeI	CTNAG	2 cut(s)	95, 197
DpnI	GATC	1 cut(s)	453
DpnII	GATC	1 cut(s)	451
DrdI	GACNNNNNNGTC	1 cut(s)	287
DseDI	GACNNNNNNGTC	1 cut(s)	287
EaeI	YGGCCR	2 cut(s)	37, 327
Eam1104I	CTCTTC	2 cut(s)	140, 197
EarI	CTCTTC	2 cut(s)	140, 197
EciI	GGCGGA	1 cut(s)	43
Ecl136II	GAGCTC	1 cut(s)	286
Eco130I	CCWWGG	1 cut(s)	171
Eco24I	GRGCYC	2 cut(s)	288, 490
Eco47I	GGWCC	3 cut(s)	159, 175, 313
Eco53kI	GAGCTC	1 cut(s)	286
Eco57I	CTGAAG	1 cut(s)	479
Eco72I	CACGTG	1 cut(s)	373
Eco88I	CYCGRG	1 cut(s)	511
EcoICRI	GAGCTC	1 cut(s)	286
EcoRI	GAATTC	1 cut(s)	74
EcoRII	CCWGG	1 cut(s)	251
EcoT14I	CCWWGG	1 cut(s)	171
EcoT38I	GRGCYC	2 cut(s)	288, 490
ErhI	CCWWGG	1 cut(s)	171
Esp3I	CGTCTC	1 cut(s)	223
FaeI	CATG	2 cut(s)	175, 431
FaiI	YATR	5 cut(s)	173, 429, 461, 483, 533
FaqI	GGGAC	2 cut(s)	326, 457
FatI	CATG	2 cut(s)	171, 427
FauI	CCCGC	1 cut(s)	281
Fnu4HI	GCNGC	1 cut(s)	249
FokI	GGATG	1 cut(s)	512
FriOI	GRGCYC	2 cut(s)	288, 490
Fsp4HI	GCNGC	1 cut(s)	249
GluI	GCNGC	1 cut(s)	249
GsaI	CCCAGC	1 cut(s)	338
HaeIII	GGCC	2 cut(s)	39, 329
HapII	CCGG	7 cut(s)	9, 22, 36, 130, 157, 305, 316
HgaI	GACGC	2 cut(s)	128, 376
Hin1I	GRCGYC	1 cut(s)	120
Hin1II	CATG	2 cut(s)	175, 431
HincII	GTYRAC	1 cut(s)	366
HindII	GTYRAC	1 cut(s)	366
HinfI	GANTC	2 cut(s)	12, 473
HpaII	CCGG	7 cut(s)	9, 22, 36, 130, 157, 305, 316
HphI	GGTGA	2 cut(s)	10, 355
Hpy166II	GTNNAC	2 cut(s)	6, 366
Hpy188I	TCNGA	2 cut(s)	73, 118
Hpy188III	TCNNGA	3 cut(s)	139, 322, 497
Hpy8I	GTNNAC	2 cut(s)	6, 366
Hpy99I	CGWCG	6 cut(s)	122, 281, 284, 293, 389, 392
HpyAV	CCTTC	2 cut(s)	114, 434
HpyCH4III	ACNGT	1 cut(s)	349
HpyCH4IV	ACGT	2 cut(s)	372, 384
HpyF10VI	GCNNNNNNNGC	1 cut(s)	53
HpyF3I	CTNAG	2 cut(s)	95, 197
HpySE526I	ACGT	2 cut(s)	372, 384
Hsp92I	GRCGYC	1 cut(s)	120
Hsp92II	CATG	2 cut(s)	175, 431
KroI	GCCGGC	1 cut(s)	35
KroNI	GCCGGC	1 cut(s)	37
Kzo9I	GATC	1 cut(s)	451
LguI	GCTCTTC	1 cut(s)	140
LweI	GCATC	1 cut(s)	493
MaeII	ACGT	2 cut(s)	372, 384
MaeIII	GTNAC	2 cut(s)	16, 343
MalI	GATC	1 cut(s)	453
MboI	GATC	1 cut(s)	451
MboII	GAAGA	6 cut(s)	127, 184, 223, 235, 250, 253
MflI	RGATCY	1 cut(s)	451
MhlI	GDGCHC	2 cut(s)	288, 490
MluCI	AATT	2 cut(s)	74, 520
MmeI	TCCRAC	2 cut(s)	141, 186
MroNI	GCCGGC	1 cut(s)	35
MslI	CAYNNNNRTG	1 cut(s)	530
MspI	CCGG	7 cut(s)	9, 22, 36, 130, 157, 305, 316
MspR9I	CCNGG	4 cut(s)	22, 130, 253, 317
MvaI	CCWGG	1 cut(s)	253
MvnI	CGCG	1 cut(s)	276
MwoI	GCNNNNNNNGC	1 cut(s)	53
NaeI	GCCGGC	1 cut(s)	37
NciI	CCSGG	3 cut(s)	22, 130, 317
NcoI	CCATGG	1 cut(s)	171
NdeII	GATC	1 cut(s)	451
NgoMIV	GCCGGC	1 cut(s)	35
NlaIII	CATG	2 cut(s)	175, 431
NlaIV	GGNNCC	1 cut(s)	314
NmuCI	GTSAC	2 cut(s)	16, 343
PciSI	GCTCTTC	1 cut(s)	140
PcsI	WCGNNNNNNNCGW	3 cut(s)	285, 288, 327
PdiI	GCCGGC	1 cut(s)	37
PfeI	GAWTC	2 cut(s)	12, 473
PflFI	GACNNNGTC	1 cut(s)	317
PkrI	GCNGC	1 cut(s)	250
PmaCI	CACGTG	1 cut(s)	373
PmlI	CACGTG	1 cut(s)	373
Ppu21I	YACGTR	1 cut(s)	373
PshAI	GACNNNNGTC	1 cut(s)	67
Psp124BI	GAGCTC	1 cut(s)	288
Psp6I	CCWGG	1 cut(s)	251
PspCI	CACGTG	1 cut(s)	373
PspFI	CCCAGC	1 cut(s)	334
PspGI	CCWGG	1 cut(s)	251
PspN4I	GGNNCC	1 cut(s)	314
PspPI	GGNCC	3 cut(s)	159, 175, 313
PstNI	CAGNNNCTG	1 cut(s)	145
PsuI	RGATCY	1 cut(s)	451
PsyI	GACNNNGTC	1 cut(s)	317
RseI	CAYNNNNRTG	1 cut(s)	530
SacI	GAGCTC	1 cut(s)	288
SapI	GCTCTTC	1 cut(s)	140
SatI	GCNGC	1 cut(s)	249
Sau3AI	GATC	1 cut(s)	451
Sau96I	GGNCC	3 cut(s)	159, 175, 313
ScrFI	CCNGG	4 cut(s)	22, 130, 253, 317
SduI	GDGCHC	2 cut(s)	288, 490
SetI	ASST	5 cut(s)	114, 147, 288, 375, 387
SfaNI	GCATC	1 cut(s)	493
SinI	GGWCC	3 cut(s)	159, 175, 313
SmiMI	CAYNNNNRTG	1 cut(s)	530
Sse9I	AATT	2 cut(s)	74, 520
SsiI	CCGC	5 cut(s)	54, 90, 249, 274, 398
SstI	GAGCTC	1 cut(s)	288
StyD4I	CCNGG	4 cut(s)	20, 128, 251, 315
StyI	CCWWGG	1 cut(s)	171
TaaI	ACNGT	1 cut(s)	349
TaiI	ACGT	2 cut(s)	375, 387
TasI	AATT	2 cut(s)	74, 520
TauI	GCSGC	1 cut(s)	251
TfiI	GAWTC	2 cut(s)	12, 473
TseFI	GTSAC	2 cut(s)	16, 343
Tsp45I	GTSAC	2 cut(s)	16, 343
TspDTI	ATGAA	1 cut(s)	416
TspGWI	ACGGA	1 cut(s)	461
Tth111I	GACNNNGTC	1 cut(s)	317
VpaK11BI	GGWCC	3 cut(s)	159, 175, 313
XapI	RAATTY	1 cut(s)	74
XcmI	CCANNNNNNNNNTGG	2 cut(s)	169, 178

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.