Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0007628

Physical Location & Seq

Genomic Coordinates Reverse (-)

54135811 .. 54136044

Gene Structure 234 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG419100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 234 bp

ATGGCCGCGCACAGGTCGTGGTCTGAATACGCCTACCCAACTACCCCCAGCCTCCCTTTAAATCTCTCTGACGCCGCAACCCGACTCTTCCAGAACTTGACCCATTTTCGAACCACCTACGTCATGGTCCTCTTGGTCGAGCTCTTCCTCAACCTCATCTACCACCCGGTCTCCATCAATGTCTTCTTGATCGTCTTCGTTGCCTGGGTCTCCTTCTACTTCTCACTCAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006810 GO:0008150 GO:0012505 GO:0016032 GO:0016192 GO:0040011 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044000 GO:0044403 GO:0044419 GO:0044424 GO:0044444 GO:0044464 GO:0044766 GO:0046739 GO:0046794 GO:0051179 GO:0051234 GO:0051701 GO:0051704 GO:0051814 GO:0052126 GO:0052192 GO:1902579

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PRA1

Protein Analysis

77

Amino Acids

8.97

Weight (kDa)

6.81

Isoelectric Point (pI)

32.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PRA1	PF03208	2 - 75	6.3e-15	PRA1 family protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007628)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04260
fragaria_vesca	FvH4_4g02350 FvH4_4g02350
malus_domestica	MD05G1024600.v1.1 MD08G1228100.v1.1 MD13G1205600.v1.1 MD16G1207300.v1.1
prunus_persica	Prupe.1G028100_v2.0.a1
pyrus_communis	pycom13g17840 pycom16g17430
rosa_chinensis	RchiOBHm_Chr4g0389731
rosa_laevigata	RLG00000009959
rosa_multiflora	Rmu_co8067152.1_g000001 Rmu_sc0000367.1_g000058 Rmu_sc0001336.1_g000076 Rmu_sc0003144.1_g000009 Rmu_sc0008048.1_g000008 Rmu_sc0010773.1_g000001 Rmu_sc0029928.1_g000001
rosa_roxburghii	Rroxscaffold_5G00335730
rosa_rugosa	Rorug03G0325000
rosa_samantha	Rh4CG031700 Rh7CG419100
rosa_wichuraiana	Rw4G002240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	8
AciI	CCGC	2 cut(s)	6, 75
AcoI	YGGCCR	1 cut(s)	3
AcyI	GRCGYC	1 cut(s)	72
AfiI	CCNNNNNNNGG	1 cut(s)	12
AjnI	CCWGG	1 cut(s)	203
AluBI	AGCT	1 cut(s)	142
AluI	AGCT	1 cut(s)	142
Alw21I	GWGCWC	1 cut(s)	144
Alw26I	GTCTC	2 cut(s)	175, 214
AoxI	GGCC	1 cut(s)	3
AspLEI	GCGC	1 cut(s)	10
AspS9I	GGNCC	1 cut(s)	127
AsuC2I	CCSGG	1 cut(s)	167
AsuII	TTCGAA	1 cut(s)	109
AvaII	GGWCC	1 cut(s)	127
BanII	GRGCYC	1 cut(s)	144
BbsI	GAAGAC	2 cut(s)	175, 187
Bbv12I	GWGCWC	1 cut(s)	144
BccI	CCATC	1 cut(s)	182
BciT130I	CCWGG	1 cut(s)	205
BcnI	CCSGG	1 cut(s)	167
BcoDI	GTCTC	2 cut(s)	175, 214
BfaI	CTAG	1 cut(s)	232
BisI	GCNGC	2 cut(s)	6, 75
BlsI	GCNGC	2 cut(s)	7, 76
Bme1390I	CCNGG	2 cut(s)	167, 205
Bme18I	GGWCC	1 cut(s)	127
BmgT120I	GGNCC	1 cut(s)	127
BmrFI	CCNGG	2 cut(s)	167, 205
BpiI	GAAGAC	2 cut(s)	175, 187
Bpu14I	TTCGAA	1 cut(s)	109
BpuMI	CCSGG	1 cut(s)	167
BsaHI	GRCGYC	1 cut(s)	72
BsaI	GGTCTC	2 cut(s)	175, 214
BsaJI	CCNNGG	1 cut(s)	204
BsaXI	ACNNNNNCTCC	2 cut(s)	155, 185
Bsc4I	CCNNNNNNNGG	1 cut(s)	12
BseBI	CCWGG	1 cut(s)	205
BseDI	CCNNGG	1 cut(s)	204
BseLI	CCNNNNNNNGG	1 cut(s)	12
BseYI	CCCAGC	1 cut(s)	47
Bsh1236I	CGCG	1 cut(s)	8
BshFI	GGCC	1 cut(s)	5
BsiHKAI	GWGCWC	1 cut(s)	144
BsiSI	CCGG	1 cut(s)	167
BslI	CCNNNNNNNGG	1 cut(s)	12
BsmAI	GTCTC	2 cut(s)	175, 214
BsnI	GGCC	1 cut(s)	5
Bso31I	GGTCTC	2 cut(s)	175, 214
Bsp119I	TTCGAA	1 cut(s)	109
Bsp1286I	GDGCHC	1 cut(s)	144
Bsp143I	GATC	1 cut(s)	189
BspACI	CCGC	2 cut(s)	6, 75
BspANI	GGCC	1 cut(s)	5
BspFNI	CGCG	1 cut(s)	8
BspQI	GCTCTTC	1 cut(s)	149
BspT104I	TTCGAA	1 cut(s)	109
BspTNI	GGTCTC	2 cut(s)	175, 214
BssECI	CCNNGG	1 cut(s)	204
BssMI	GATC	1 cut(s)	189
BssNI	GRCGYC	1 cut(s)	72
Bst2UI	CCWGG	1 cut(s)	205
Bst6I	CTCTTC	2 cut(s)	92, 149
BstACI	GRCGYC	1 cut(s)	72
BstBI	TTCGAA	1 cut(s)	109
BstFNI	CGCG	1 cut(s)	8
BstHHI	GCGC	1 cut(s)	10
BstKTI	GATC	1 cut(s)	192
BstMAI	GTCTC	2 cut(s)	175, 214
BstMBI	GATC	1 cut(s)	189
BstNI	CCWGG	1 cut(s)	205
BstSCI	CCNGG	2 cut(s)	165, 203
BstUI	CGCG	1 cut(s)	8
BstV2I	GAAGAC	2 cut(s)	175, 187
BsuRI	GGCC	1 cut(s)	5
CfoI	GCGC	1 cut(s)	10
Cfr13I	GGNCC	1 cut(s)	127
CseI	GACGC	1 cut(s)	80
CviAII	CATG	1 cut(s)	124
CviJI	RGCY	3 cut(s)	5, 51, 142
CviKI_1	RGCY	3 cut(s)	5, 51, 142
DpnI	GATC	1 cut(s)	191
DpnII	GATC	1 cut(s)	189
DraI	TTTAAA	1 cut(s)	60
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	2 cut(s)	92, 149
EarI	CTCTTC	2 cut(s)	92, 149
Ecl136II	GAGCTC	1 cut(s)	142
Eco24I	GRGCYC	1 cut(s)	144
Eco31I	GGTCTC	2 cut(s)	175, 214
Eco47I	GGWCC	1 cut(s)	127
Eco53kI	GAGCTC	1 cut(s)	142
EcoICRI	GAGCTC	1 cut(s)	142
EcoRII	CCWGG	1 cut(s)	203
EcoT38I	GRGCYC	1 cut(s)	144
FaeI	CATG	1 cut(s)	127
FaiI	YATR	1 cut(s)	125
FatI	CATG	1 cut(s)	123
Fnu4HI	GCNGC	2 cut(s)	6, 75
FriOI	GRGCYC	1 cut(s)	144
Fsp4HI	GCNGC	2 cut(s)	6, 75
FspBI	CTAG	1 cut(s)	232
GlaI	GCGC	1 cut(s)	9
GluI	GCNGC	2 cut(s)	6, 75
GsaI	CCCAGC	1 cut(s)	51
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	1 cut(s)	167
HgaI	GACGC	1 cut(s)	80
HhaI	GCGC	1 cut(s)	10
Hin1I	GRCGYC	1 cut(s)	72
Hin1II	CATG	1 cut(s)	127
Hin6I	GCGC	1 cut(s)	8
HinP1I	GCGC	1 cut(s)	8
HinfI	GANTC	1 cut(s)	84
HpaII	CCGG	1 cut(s)	167
Hpy188I	TCNGA	2 cut(s)	25, 70
Hpy188III	TCNNGA	2 cut(s)	91, 187
HpyAV	CCTTC	1 cut(s)	223
HpyCH4IV	ACGT	1 cut(s)	120
HpySE526I	ACGT	1 cut(s)	120
Hsp92I	GRCGYC	1 cut(s)	72
Hsp92II	CATG	1 cut(s)	127
HspAI	GCGC	1 cut(s)	8
Kzo9I	GATC	1 cut(s)	189
LguI	GCTCTTC	1 cut(s)	149
LpnPI	CCDG	5 cut(s)	61, 104, 180, 190, 217
MaeI	CTAG	1 cut(s)	232
MaeII	ACGT	1 cut(s)	120
MalI	GATC	1 cut(s)	191
MboI	GATC	1 cut(s)	189
MboII	GAAGA	4 cut(s)	79, 136, 175, 187
MhlI	GDGCHC	1 cut(s)	144
MlyI	GAGTC	1 cut(s)	78
MnlI	CCTC	4 cut(s)	62, 140, 158, 164
MseI	TTAA	1 cut(s)	59
MspI	CCGG	1 cut(s)	167
MspR9I	CCNGG	2 cut(s)	167, 205
MvaI	CCWGG	1 cut(s)	205
MvnI	CGCG	1 cut(s)	8
NciI	CCSGG	1 cut(s)	167
NdeII	GATC	1 cut(s)	189
NlaIII	CATG	1 cut(s)	127
NspV	TTCGAA	1 cut(s)	109
PciSI	GCTCTTC	1 cut(s)	149
PkrI	GCNGC	2 cut(s)	7, 76
PleI	GAGTC	1 cut(s)	78
PpsI	GAGTC	1 cut(s)	78
Psp124BI	GAGCTC	1 cut(s)	144
Psp6I	CCWGG	1 cut(s)	203
PspFI	CCCAGC	1 cut(s)	47
PspGI	CCWGG	1 cut(s)	203
PspPI	GGNCC	1 cut(s)	127
SacI	GAGCTC	1 cut(s)	144
SapI	GCTCTTC	1 cut(s)	149
SaqAI	TTAA	1 cut(s)	59
SatI	GCNGC	2 cut(s)	6, 75
Sau3AI	GATC	1 cut(s)	189
Sau96I	GGNCC	1 cut(s)	127
SchI	GAGTC	1 cut(s)	78
ScrFI	CCNGG	2 cut(s)	167, 205
SduI	GDGCHC	1 cut(s)	144
SetI	ASST	5 cut(s)	17, 119, 123, 144, 156
SfuI	TTCGAA	1 cut(s)	109
SinI	GGWCC	1 cut(s)	127
SsiI	CCGC	2 cut(s)	6, 75
SspMI	CTAG	1 cut(s)	232
SstI	GAGCTC	1 cut(s)	144
StyD4I	CCNGG	2 cut(s)	165, 203
TaiI	ACGT	1 cut(s)	123
TaqI	TCGA	2 cut(s)	109, 138
TauI	GCSGC	2 cut(s)	8, 77
Tru1I	TTAA	1 cut(s)	59
Tru9I	TTAA	1 cut(s)	59
VpaK11BI	GGWCC	1 cut(s)	127
XcmI	CCANNNNNNNNNTGG	1 cut(s)	121
XspI	CTAG	1 cut(s)	232

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.