Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010773.1

Orthogroup ID

OG0007628

Physical Location & Seq

Genomic Coordinates Forward (+)

2939 .. 3178

Gene Structure 240 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010773.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 240 bp

atgtccaccggaatcgtgacccggttgaaggaagccggccaatcgacgatggccgcgcacaggtcgtggtctgaaaacgcctgcccaaccacccccaacctccctttaaatctctctgacgccgcgacccgactcttacagaacttgacccattttcgaaccacctacgtcatagtcctcttggtcgagctcttcctcagcctcaaaacgcctgcccaaccacccccagcctccctttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006810 GO:0008150 GO:0012505 GO:0016032 GO:0016192 GO:0040011 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044000 GO:0044403 GO:0044419 GO:0044424 GO:0044444 GO:0044464 GO:0044766 GO:0046739 GO:0046794 GO:0051179 GO:0051234 GO:0051701 GO:0051704 GO:0051814 GO:0052126 GO:0052192 GO:1902579

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PRA1

Protein Analysis

79

Amino Acids

8.6

Weight (kDa)

9.18

Isoelectric Point (pI)

47.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007628)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04260
fragaria_vesca	FvH4_4g02350 FvH4_4g02350
malus_domestica	MD05G1024600.v1.1 MD08G1228100.v1.1 MD13G1205600.v1.1 MD16G1207300.v1.1
prunus_persica	Prupe.1G028100_v2.0.a1
pyrus_communis	pycom13g17840 pycom16g17430
rosa_chinensis	RchiOBHm_Chr4g0389731
rosa_laevigata	RLG00000009959
rosa_multiflora	Rmu_co8067152.1_g000001 Rmu_sc0000367.1_g000058 Rmu_sc0001336.1_g000076 Rmu_sc0003144.1_g000009 Rmu_sc0008048.1_g000008 Rmu_sc0010773.1_g000001 Rmu_sc0029928.1_g000001
rosa_roxburghii	Rroxscaffold_5G00335730
rosa_rugosa	Rorug03G0325000
rosa_samantha	Rh4CG031700 Rh7CG419100
rosa_wichuraiana	Rw4G002240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	56, 125
AciI	CCGC	2 cut(s)	54, 123
AcoI	YGGCCR	2 cut(s)	37, 51
AcyI	GRCGYC	1 cut(s)	120
AfiI	CCNNNNNNNGG	2 cut(s)	28, 60
AgsI	TTSAA	1 cut(s)	28
AluBI	AGCT	1 cut(s)	190
AluI	AGCT	1 cut(s)	190
Alw21I	GWGCWC	1 cut(s)	192
AoxI	GGCC	2 cut(s)	37, 51
AspLEI	GCGC	1 cut(s)	58
AsuC2I	CCSGG	1 cut(s)	22
AsuII	TTCGAA	1 cut(s)	157
BanII	GRGCYC	1 cut(s)	192
Bbv12I	GWGCWC	1 cut(s)	192
BbvCI	CCTCAGC	1 cut(s)	197
BccI	CCATC	1 cut(s)	43
BcnI	CCSGG	1 cut(s)	22
BisI	GCNGC	2 cut(s)	54, 123
BlsI	GCNGC	2 cut(s)	55, 124
Bme1390I	CCNGG	1 cut(s)	22
BmrFI	CCNGG	1 cut(s)	22
Bpu10I	CCTNAGC	1 cut(s)	197
Bpu14I	TTCGAA	1 cut(s)	157
BpuMI	CCSGG	1 cut(s)	22
BsaHI	GRCGYC	1 cut(s)	120
BsaWI	WCCGGW	1 cut(s)	8
Bsc4I	CCNNNNNNNGG	2 cut(s)	28, 60
Bse118I	RCCGGY	1 cut(s)	35
BseLI	CCNNNNNNNGG	2 cut(s)	28, 60
BseMII	CTCAG	1 cut(s)	211
BseYI	CCCAGC	1 cut(s)	226
Bsh1236I	CGCG	2 cut(s)	56, 125
BshFI	GGCC	2 cut(s)	39, 53
BsiHKAI	GWGCWC	1 cut(s)	192
BsiSI	CCGG	3 cut(s)	9, 22, 36
BslI	CCNNNNNNNGG	2 cut(s)	28, 60
BsnI	GGCC	2 cut(s)	39, 53
Bsp119I	TTCGAA	1 cut(s)	157
Bsp1286I	GDGCHC	1 cut(s)	192
BspACI	CCGC	2 cut(s)	54, 123
BspANI	GGCC	2 cut(s)	39, 53
BspCNI	CTCAG	1 cut(s)	210
BspFNI	CGCG	2 cut(s)	56, 125
BspQI	GCTCTTC	1 cut(s)	197
BspT104I	TTCGAA	1 cut(s)	157
BsrFI	RCCGGY	1 cut(s)	35
BssAI	RCCGGY	1 cut(s)	35
BssNI	GRCGYC	1 cut(s)	120
Bst6I	CTCTTC	1 cut(s)	197
BstACI	GRCGYC	1 cut(s)	120
BstBI	TTCGAA	1 cut(s)	157
BstC8I	GCNNGC	3 cut(s)	37, 82, 213
BstDEI	CTNAG	1 cut(s)	197
BstFNI	CGCG	2 cut(s)	56, 125
BstHHI	GCGC	1 cut(s)	58
BstSCI	CCNGG	1 cut(s)	20
BstUI	CGCG	2 cut(s)	56, 125
BsuRI	GGCC	2 cut(s)	39, 53
Cac8I	GCNNGC	3 cut(s)	37, 82, 213
CfoI	GCGC	1 cut(s)	58
Cfr10I	RCCGGY	1 cut(s)	35
CseI	GACGC	1 cut(s)	128
CviJI	RGCY	6 cut(s)	35, 39, 53, 190, 201, 230
CviKI_1	RGCY	6 cut(s)	35, 39, 53, 190, 201, 230
DdeI	CTNAG	1 cut(s)	197
DraI	TTTAAA	1 cut(s)	108
EaeI	YGGCCR	2 cut(s)	37, 51
Eam1104I	CTCTTC	1 cut(s)	197
EarI	CTCTTC	1 cut(s)	197
Ecl136II	GAGCTC	1 cut(s)	190
Eco24I	GRGCYC	1 cut(s)	192
Eco53kI	GAGCTC	1 cut(s)	190
EcoICRI	GAGCTC	1 cut(s)	190
EcoT38I	GRGCYC	1 cut(s)	192
FaiI	YATR	1 cut(s)	173
Fnu4HI	GCNGC	2 cut(s)	54, 123
FriOI	GRGCYC	1 cut(s)	192
Fsp4HI	GCNGC	2 cut(s)	54, 123
GlaI	GCGC	1 cut(s)	57
GluI	GCNGC	2 cut(s)	54, 123
GsaI	CCCAGC	1 cut(s)	230
HaeIII	GGCC	2 cut(s)	39, 53
HapII	CCGG	3 cut(s)	9, 22, 36
HgaI	GACGC	1 cut(s)	128
HhaI	GCGC	1 cut(s)	58
Hin1I	GRCGYC	1 cut(s)	120
Hin6I	GCGC	1 cut(s)	56
HinP1I	GCGC	1 cut(s)	56
HinfI	GANTC	2 cut(s)	12, 132
HpaII	CCGG	3 cut(s)	9, 22, 36
Hpy166II	GTNNAC	1 cut(s)	6
Hpy188I	TCNGA	2 cut(s)	73, 118
Hpy188III	TCNNGA	1 cut(s)	16
Hpy8I	GTNNAC	1 cut(s)	6
Hpy99I	CGWCG	1 cut(s)	49
HpyAV	CCTTC	1 cut(s)	22
HpyCH4IV	ACGT	1 cut(s)	168
HpyF3I	CTNAG	1 cut(s)	197
HpySE526I	ACGT	1 cut(s)	168
Hsp92I	GRCGYC	1 cut(s)	120
HspAI	GCGC	1 cut(s)	56
KroI	GCCGGC	1 cut(s)	35
KroNI	GCCGGC	1 cut(s)	37
LguI	GCTCTTC	1 cut(s)	197
LpnPI	CCDG	6 cut(s)	22, 35, 46, 49, 94, 225
MaeII	ACGT	1 cut(s)	168
MaeIII	GTNAC	1 cut(s)	16
MboII	GAAGA	1 cut(s)	184
MhlI	GDGCHC	1 cut(s)	192
MlyI	GAGTC	1 cut(s)	126
MnlI	CCTC	4 cut(s)	110, 188, 206, 212
MroNI	GCCGGC	1 cut(s)	35
MseI	TTAA	2 cut(s)	107, 238
MspI	CCGG	3 cut(s)	9, 22, 36
MspR9I	CCNGG	1 cut(s)	22
MvnI	CGCG	2 cut(s)	56, 125
NaeI	GCCGGC	1 cut(s)	37
NciI	CCSGG	1 cut(s)	22
NgoMIV	GCCGGC	1 cut(s)	35
NmuCI	GTSAC	1 cut(s)	16
NspV	TTCGAA	1 cut(s)	157
PciSI	GCTCTTC	1 cut(s)	197
PdiI	GCCGGC	1 cut(s)	37
PfeI	GAWTC	1 cut(s)	12
PkrI	GCNGC	2 cut(s)	55, 124
PleI	GAGTC	1 cut(s)	126
PpsI	GAGTC	1 cut(s)	126
Psp124BI	GAGCTC	1 cut(s)	192
PspFI	CCCAGC	1 cut(s)	226
SacI	GAGCTC	1 cut(s)	192
SapI	GCTCTTC	1 cut(s)	197
SaqAI	TTAA	2 cut(s)	107, 238
SatI	GCNGC	2 cut(s)	54, 123
SchI	GAGTC	1 cut(s)	126
ScrFI	CCNGG	1 cut(s)	22
SduI	GDGCHC	1 cut(s)	192
SetI	ASST	5 cut(s)	65, 102, 167, 171, 192
SfuI	TTCGAA	1 cut(s)	157
SsiI	CCGC	2 cut(s)	54, 123
SstI	GAGCTC	1 cut(s)	192
StyD4I	CCNGG	1 cut(s)	20
TaiI	ACGT	1 cut(s)	171
TaqI	TCGA	3 cut(s)	44, 157, 186
TauI	GCSGC	2 cut(s)	56, 125
TfiI	GAWTC	1 cut(s)	12
Tru1I	TTAA	2 cut(s)	107, 238
Tru9I	TTAA	2 cut(s)	107, 238
TseFI	GTSAC	1 cut(s)	16
Tsp45I	GTSAC	1 cut(s)	16

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.