Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001336.1

Orthogroup ID

OG0007628

Physical Location & Seq

Genomic Coordinates Reverse (-)

339613 .. 339894

Gene Structure 282 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001336.1_g000076.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 282 bp

atgtccacaggaatcatgacctggttgaaggaagccgaccaatcggagatggccgcgcacaggtcgtggtccgaatacgcctgcccaaccgcccctagcctccctttaaacctctatgacgccgcaacccgtctcttccagaacttgacccattttcgaaccaactacgtcatggtcctcttggttgagctcttcctcagcctcatctaccattcagtctctatcaatgtcttcttgatcttcttcgccgcctgggtctccttctacttctcactcgactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006810 GO:0008150 GO:0012505 GO:0016032 GO:0016192 GO:0040011 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044000 GO:0044403 GO:0044419 GO:0044424 GO:0044444 GO:0044464 GO:0044766 GO:0046739 GO:0046794 GO:0051179 GO:0051234 GO:0051701 GO:0051704 GO:0051814 GO:0052126 GO:0052192 GO:1902579

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PRA1

Protein Analysis

93

Amino Acids

10.76

Weight (kDa)

5.4

Isoelectric Point (pI)

43.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007628)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04260
fragaria_vesca	FvH4_4g02350 FvH4_4g02350
malus_domestica	MD05G1024600.v1.1 MD08G1228100.v1.1 MD13G1205600.v1.1 MD16G1207300.v1.1
prunus_persica	Prupe.1G028100_v2.0.a1
pyrus_communis	pycom13g17840 pycom16g17430
rosa_chinensis	RchiOBHm_Chr4g0389731
rosa_laevigata	RLG00000009959
rosa_multiflora	Rmu_co8067152.1_g000001 Rmu_sc0000367.1_g000058 Rmu_sc0001336.1_g000076 Rmu_sc0003144.1_g000009 Rmu_sc0008048.1_g000008 Rmu_sc0010773.1_g000001 Rmu_sc0029928.1_g000001
rosa_roxburghii	Rroxscaffold_5G00335730
rosa_rugosa	Rorug03G0325000
rosa_samantha	Rh4CG031700 Rh7CG419100
rosa_wichuraiana	Rw4G002240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	56
AciI	CCGC	4 cut(s)	54, 90, 123, 249
AcoI	YGGCCR	1 cut(s)	51
AcyI	GRCGYC	1 cut(s)	120
AfiI	CCNNNNNNNGG	1 cut(s)	60
AgsI	TTSAA	1 cut(s)	28
AjnI	CCWGG	2 cut(s)	20, 251
AluBI	AGCT	1 cut(s)	190
AluI	AGCT	1 cut(s)	190
Alw21I	GWGCWC	1 cut(s)	192
Alw26I	GTCTC	3 cut(s)	137, 223, 262
AoxI	GGCC	1 cut(s)	51
AspLEI	GCGC	1 cut(s)	58
AspS9I	GGNCC	2 cut(s)	69, 175
AsuII	TTCGAA	1 cut(s)	157
AvaII	GGWCC	2 cut(s)	69, 175
BanII	GRGCYC	1 cut(s)	192
BbsI	GAAGAC	1 cut(s)	223
Bbv12I	GWGCWC	1 cut(s)	192
BbvCI	CCTCAGC	1 cut(s)	197
BccI	CCATC	1 cut(s)	43
BciT130I	CCWGG	2 cut(s)	22, 253
BcoDI	GTCTC	3 cut(s)	137, 223, 262
BfaI	CTAG	2 cut(s)	96, 280
BisI	GCNGC	3 cut(s)	54, 123, 249
BlsI	GCNGC	3 cut(s)	55, 124, 250
Bme1390I	CCNGG	2 cut(s)	22, 253
Bme18I	GGWCC	2 cut(s)	69, 175
BmgT120I	GGNCC	2 cut(s)	69, 175
BmrFI	CCNGG	2 cut(s)	22, 253
BpiI	GAAGAC	1 cut(s)	223
Bpu10I	CCTNAGC	1 cut(s)	197
Bpu14I	TTCGAA	1 cut(s)	157
BsaHI	GRCGYC	1 cut(s)	120
BsaI	GGTCTC	1 cut(s)	262
BsaJI	CCNNGG	1 cut(s)	252
Bsc4I	CCNNNNNNNGG	1 cut(s)	60
BseBI	CCWGG	2 cut(s)	22, 253
BseDI	CCNNGG	1 cut(s)	252
BseLI	CCNNNNNNNGG	1 cut(s)	60
BseMII	CTCAG	1 cut(s)	211
Bsh1236I	CGCG	1 cut(s)	56
BshFI	GGCC	1 cut(s)	53
BsiHKAI	GWGCWC	1 cut(s)	192
BslI	CCNNNNNNNGG	1 cut(s)	60
BsmAI	GTCTC	3 cut(s)	137, 223, 262
BsmBI	CGTCTC	1 cut(s)	137
BsnI	GGCC	1 cut(s)	53
Bso31I	GGTCTC	1 cut(s)	262
Bsp119I	TTCGAA	1 cut(s)	157
Bsp1286I	GDGCHC	1 cut(s)	192
Bsp143I	GATC	1 cut(s)	237
BspACI	CCGC	4 cut(s)	54, 90, 123, 249
BspANI	GGCC	1 cut(s)	53
BspCNI	CTCAG	1 cut(s)	210
BspFNI	CGCG	1 cut(s)	56
BspHI	TCATGA	1 cut(s)	15
BspQI	GCTCTTC	1 cut(s)	197
BspT104I	TTCGAA	1 cut(s)	157
BspTNI	GGTCTC	1 cut(s)	262
BssECI	CCNNGG	1 cut(s)	252
BssMI	GATC	1 cut(s)	237
BssNI	GRCGYC	1 cut(s)	120
Bst2UI	CCWGG	2 cut(s)	22, 253
Bst6I	CTCTTC	2 cut(s)	140, 197
BstACI	GRCGYC	1 cut(s)	120
BstBI	TTCGAA	1 cut(s)	157
BstC8I	GCNNGC	1 cut(s)	82
BstDEI	CTNAG	1 cut(s)	197
BstFNI	CGCG	1 cut(s)	56
BstHHI	GCGC	1 cut(s)	58
BstKTI	GATC	1 cut(s)	240
BstMAI	GTCTC	3 cut(s)	137, 223, 262
BstMBI	GATC	1 cut(s)	237
BstNI	CCWGG	2 cut(s)	22, 253
BstSCI	CCNGG	2 cut(s)	20, 251
BstUI	CGCG	1 cut(s)	56
BstV2I	GAAGAC	1 cut(s)	223
BsuRI	GGCC	1 cut(s)	53
Cac8I	GCNNGC	1 cut(s)	82
CciI	TCATGA	1 cut(s)	15
CfoI	GCGC	1 cut(s)	58
Cfr13I	GGNCC	2 cut(s)	69, 175
CseI	GACGC	1 cut(s)	128
CsiI	ACCWGGT	1 cut(s)	20
CviAII	CATG	2 cut(s)	16, 172
CviJI	RGCY	5 cut(s)	35, 53, 99, 190, 201
CviKI_1	RGCY	5 cut(s)	35, 53, 99, 190, 201
DdeI	CTNAG	1 cut(s)	197
DpnI	GATC	1 cut(s)	239
DpnII	GATC	1 cut(s)	237
DraI	TTTAAA	1 cut(s)	108
EaeI	YGGCCR	1 cut(s)	51
Eam1104I	CTCTTC	2 cut(s)	140, 197
EarI	CTCTTC	2 cut(s)	140, 197
Ecl136II	GAGCTC	1 cut(s)	190
Eco24I	GRGCYC	1 cut(s)	192
Eco31I	GGTCTC	1 cut(s)	262
Eco47I	GGWCC	2 cut(s)	69, 175
Eco53kI	GAGCTC	1 cut(s)	190
EcoICRI	GAGCTC	1 cut(s)	190
EcoRII	CCWGG	2 cut(s)	20, 251
EcoT38I	GRGCYC	1 cut(s)	192
Esp3I	CGTCTC	1 cut(s)	137
FaeI	CATG	2 cut(s)	19, 175
FaiI	YATR	3 cut(s)	17, 117, 173
FatI	CATG	2 cut(s)	15, 171
Fnu4HI	GCNGC	3 cut(s)	54, 123, 249
FriOI	GRGCYC	1 cut(s)	192
Fsp4HI	GCNGC	3 cut(s)	54, 123, 249
FspBI	CTAG	2 cut(s)	96, 280
GlaI	GCGC	1 cut(s)	57
GluI	GCNGC	3 cut(s)	54, 123, 249
HaeIII	GGCC	1 cut(s)	53
HgaI	GACGC	1 cut(s)	128
HhaI	GCGC	1 cut(s)	58
Hin1I	GRCGYC	1 cut(s)	120
Hin1II	CATG	2 cut(s)	19, 175
Hin6I	GCGC	1 cut(s)	56
HinP1I	GCGC	1 cut(s)	56
HinfI	GANTC	1 cut(s)	12
Hpy166II	GTNNAC	1 cut(s)	6
Hpy188I	TCNGA	2 cut(s)	46, 73
Hpy188III	TCNNGA	3 cut(s)	16, 139, 235
Hpy8I	GTNNAC	1 cut(s)	6
HpyAV	CCTTC	2 cut(s)	22, 271
HpyCH4IV	ACGT	1 cut(s)	168
HpyF3I	CTNAG	1 cut(s)	197
HpySE526I	ACGT	1 cut(s)	168
Hsp92I	GRCGYC	1 cut(s)	120
Hsp92II	CATG	2 cut(s)	19, 175
HspAI	GCGC	1 cut(s)	56
Kzo9I	GATC	1 cut(s)	237
LguI	GCTCTTC	1 cut(s)	197
LpnPI	CCDG	7 cut(s)	7, 34, 46, 94, 152, 238, 265
MabI	ACCWGGT	1 cut(s)	20
MaeI	CTAG	2 cut(s)	96, 280
MaeII	ACGT	1 cut(s)	168
MalI	GATC	1 cut(s)	239
MboI	GATC	1 cut(s)	237
MboII	GAAGA	5 cut(s)	127, 184, 223, 232, 235
MhlI	GDGCHC	1 cut(s)	192
MnlI	CCTC	5 cut(s)	110, 122, 188, 206, 212
MseI	TTAA	1 cut(s)	107
MspR9I	CCNGG	2 cut(s)	22, 253
MvaI	CCWGG	2 cut(s)	22, 253
MvnI	CGCG	1 cut(s)	56
NdeII	GATC	1 cut(s)	237
NlaIII	CATG	2 cut(s)	19, 175
NspV	TTCGAA	1 cut(s)	157
PagI	TCATGA	1 cut(s)	15
PciSI	GCTCTTC	1 cut(s)	197
PfeI	GAWTC	1 cut(s)	12
PkrI	GCNGC	3 cut(s)	55, 124, 250
Psp124BI	GAGCTC	1 cut(s)	192
Psp6I	CCWGG	2 cut(s)	20, 251
PspGI	CCWGG	2 cut(s)	20, 251
PspPI	GGNCC	2 cut(s)	69, 175
SacI	GAGCTC	1 cut(s)	192
SapI	GCTCTTC	1 cut(s)	197
SaqAI	TTAA	1 cut(s)	107
SatI	GCNGC	3 cut(s)	54, 123, 249
Sau3AI	GATC	1 cut(s)	237
Sau96I	GGNCC	2 cut(s)	69, 175
ScrFI	CCNGG	2 cut(s)	22, 253
SduI	GDGCHC	1 cut(s)	192
SetI	ASST	5 cut(s)	23, 65, 114, 171, 192
SexAI	ACCWGGT	1 cut(s)	20
SfuI	TTCGAA	1 cut(s)	157
SinI	GGWCC	2 cut(s)	69, 175
SsiI	CCGC	4 cut(s)	54, 90, 123, 249
SspMI	CTAG	2 cut(s)	96, 280
SstI	GAGCTC	1 cut(s)	192
StyD4I	CCNGG	2 cut(s)	20, 251
TaiI	ACGT	1 cut(s)	171
TaqI	TCGA	2 cut(s)	157, 276
TauI	GCSGC	3 cut(s)	56, 125, 251
TfiI	GAWTC	1 cut(s)	12
Tru1I	TTAA	1 cut(s)	107
Tru9I	TTAA	1 cut(s)	107
VpaK11BI	GGWCC	2 cut(s)	69, 175
XcmI	CCANNNNNNNNNTGG	1 cut(s)	169
XspI	CTAG	2 cut(s)	96, 280

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.