Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0014070

Physical Location & Seq

Genomic Coordinates Reverse (-)

1502251 .. 1503853

Gene Structure 1603 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G05190.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ATGGCTTCCTCACTCGTCTCATCTTTTCAACCCAGGTCAGCATTTTTGGGAGATAGAAATGTGTTCAAGGTCTCAAGCACACCTTTTGCTCAAGTGGGTTACTCCAGTAAGACCATTGAGTGCAAAGAATCAAGGATAGGAAAGCAACCGATCGCTGTACCTTCCAATGTAACCATTGCATTGGAAGGTCAAGACTTGAAAGTGAAGGGTCCATTAGGAGAGCTGGCTTTAACTTACCCACGCGAAGTTGAGCTTACAAAGGAAGAATCCGGTTTCTTAAGGGTCAAAAAAACCGTCGAAACTAGAAGAGCCAACCAAATGCACGGCCTTTTCAGGACGCTTACCGATAACATGGTTGTGGGAGTATCAAAGGGATTTGAGAAAAAGCTTATACTTGTGGGTGTTGGTTATCGTGCAACAGTAGACGGAAAGGAGCTGGTGCTAAATCTCGGGTTTTCACACCCGGTGAAGATGCAGATACCGGATAGTCTGAAAGTGAAAGTGGAAGAGAACACAAGAATCACTGTGAGTGGATACGACAAGAGCGAAATCGGGCAGTTTGCTGCAACGGTTAGGAAGTGGAGGCCACCAGAGCCATACAAGGGGAAAGGAGTCAAGTATTCCGATGAGATAGTTCGGAGGAAGGAAGGAAAAGCTGGAAAGAAGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0007275 GO:0008150 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009719 GO:0009725 GO:0009735 GO:0009790 GO:0009791 GO:0009793 GO:0009941 GO:0010033 GO:0010154 GO:0016020 GO:0022414 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L6

Protein Analysis

223

Amino Acids

24.71

Weight (kDa)

9.89

Isoelectric Point (pI)

35.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L6	PF00347	53 - 125	9.3e-14	Ribosomal protein L6
Ribosomal_L6	PF00347	133 - 207	3.6e-24	Ribosomal protein L6

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0014070)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05190
fragaria_vesca	FvH4_6g43280
malus_domestica	MD09G1107800.v1.1 MD09G1108400.v1.1 MD17G1096300.v1.1
prunus_persica	Prupe.1G100300_v2.0.a1
pyrus_communis	pycom09g03090 pycom17g09240
rosa_chinensis	RchiOBHm_Chr2g0159551
rosa_laevigata	RLG00000021165
rosa_multiflora	Rmu_sc0004260.1_g000004 Rmu_sc0012414.1_g000013
rosa_roxburghii	Rroxscaffold_2G00090410
rosa_rugosa	Rorug02G0476800
rosa_samantha	Rh2BG556800 Rh2CG527000
rosa_wichuraiana	Rw2G044970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	423
AccII	CGCG	1 cut(s)	243
AdeI	CACNNNGTG	1 cut(s)	466
AfaI	GTAC	1 cut(s)	159
AfiI	CCNNNNNNNGG	1 cut(s)	602
AflII	CTTAAG	1 cut(s)	277
AgsI	TTSAA	3 cut(s)	29, 67, 199
AjnI	CCWGG	1 cut(s)	32
AluBI	AGCT	5 cut(s)	223, 253, 388, 436, 656
AluI	AGCT	5 cut(s)	223, 253, 388, 436, 656
Alw26I	GTCTC	2 cut(s)	22, 76
Ama87I	CYCGRG	1 cut(s)	449
AoxI	GGCC	2 cut(s)	325, 584
ApeKI	GCWGC	1 cut(s)	563
ArsI	GACNNNNNNTTYG	2 cut(s)	279, 311
AspS9I	GGNCC	1 cut(s)	209
AsuC2I	CCSGG	1 cut(s)	464
AsuHPI	GGTGA	1 cut(s)	478
AvaI	CYCGRG	1 cut(s)	449
AvaII	GGWCC	1 cut(s)	209
BbvI	GCAGC	1 cut(s)	550
BceAI	ACGGC	1 cut(s)	340
BciT130I	CCWGG	1 cut(s)	34
BciVI	GTATCC	1 cut(s)	527
BcnI	CCSGG	1 cut(s)	464
BcoDI	GTCTC	2 cut(s)	22, 76
BfaI	CTAG	1 cut(s)	303
BfrI	CTTAAG	1 cut(s)	277
BfuI	GTATCC	1 cut(s)	527
BisI	GCNGC	1 cut(s)	564
BlsI	GCNGC	1 cut(s)	565
Bme1390I	CCNGG	2 cut(s)	34, 464
Bme18I	GGWCC	1 cut(s)	209
BmeT110I	CYCGRG	1 cut(s)	449
BmgT120I	GGNCC	1 cut(s)	209
BmiI	GGNNCC	1 cut(s)	210
BmrFI	CCNGG	2 cut(s)	34, 464
BmsI	GCATC	1 cut(s)	462
BpmI	CTGGAG	1 cut(s)	88
BpuEI	CTTGAG	2 cut(s)	58, 75
BpuMI	CCSGG	1 cut(s)	464
BsaI	GGTCTC	1 cut(s)	76
BsaJI	CCNNGG	1 cut(s)	32
BsaWI	WCCGGW	2 cut(s)	269, 481
Bsc4I	CCNNNNNNNGG	1 cut(s)	602
Bse1I	ACTGG	1 cut(s)	105
Bse3DI	GCAATG	1 cut(s)	174
BseBI	CCWGG	1 cut(s)	34
BseDI	CCNNGG	1 cut(s)	32
BseLI	CCNNNNNNNGG	1 cut(s)	602
BseMI	GCAATG	1 cut(s)	174
BseNI	ACTGG	1 cut(s)	105
BseXI	GCAGC	1 cut(s)	550
Bsh1236I	CGCG	1 cut(s)	243
Bsh1285I	CGRYCG	1 cut(s)	153
BshFI	GGCC	2 cut(s)	327, 586
BsiEI	CGRYCG	1 cut(s)	153
BsiHKCI	CYCGRG	1 cut(s)	449
BsiSI	CCGG	3 cut(s)	270, 464, 482
BslI	CCNNNNNNNGG	1 cut(s)	602
BsmAI	GTCTC	2 cut(s)	22, 76
BsmBI	CGTCTC	1 cut(s)	22
BsnI	GGCC	2 cut(s)	327, 586
Bso31I	GGTCTC	1 cut(s)	76
BsoBI	CYCGRG	1 cut(s)	449
Bsp143I	GATC	1 cut(s)	150
BspANI	GGCC	2 cut(s)	327, 586
BspFNI	CGCG	1 cut(s)	243
BspLI	GGNNCC	1 cut(s)	210
BspQI	GCTCTTC	1 cut(s)	301
BspTI	CTTAAG	1 cut(s)	277
BspTNI	GGTCTC	1 cut(s)	76
BsrDI	GCAATG	1 cut(s)	174
BsrI	ACTGG	1 cut(s)	105
BssECI	CCNNGG	1 cut(s)	32
BssMI	GATC	1 cut(s)	150
Bst2UI	CCWGG	1 cut(s)	34
Bst4CI	ACNGT	4 cut(s)	295, 421, 526, 571
Bst6I	CTCTTC	2 cut(s)	301, 501
BstAFI	CTTAAG	1 cut(s)	277
BstC8I	GCNNGC	1 cut(s)	225
BstFNI	CGCG	1 cut(s)	243
BstKTI	GATC	1 cut(s)	153
BstMAI	GTCTC	2 cut(s)	22, 76
BstMBI	GATC	1 cut(s)	150
BstMCI	CGRYCG	1 cut(s)	153
BstMWI	GCNNNNNNNGC	1 cut(s)	592
BstNI	CCWGG	1 cut(s)	34
BstSCI	CCNGG	2 cut(s)	32, 462
BstUI	CGCG	1 cut(s)	243
BstV1I	GCAGC	1 cut(s)	550
BstXI	CCANNNNNNTGG	1 cut(s)	181
BsuI	GTATCC	1 cut(s)	527
BsuRI	GGCC	2 cut(s)	327, 586
BtsIMutI	CAGTG	1 cut(s)	522
Cac8I	GCNNGC	1 cut(s)	225
Cfr13I	GGNCC	1 cut(s)	209
CseI	GACGC	1 cut(s)	346
Csp6I	GTAC	1 cut(s)	158
CviAII	CATG	1 cut(s)	352
CviQI	GTAC	1 cut(s)	158
DpnI	GATC	1 cut(s)	152
DpnII	GATC	1 cut(s)	150
DraIII	CACNNNGTG	1 cut(s)	466
Eam1104I	CTCTTC	2 cut(s)	301, 501
EarI	CTCTTC	2 cut(s)	301, 501
Eco31I	GGTCTC	1 cut(s)	76
Eco47I	GGWCC	1 cut(s)	209
Eco88I	CYCGRG	1 cut(s)	449
EcoRII	CCWGG	1 cut(s)	32
Esp3I	CGTCTC	1 cut(s)	22
FaeI	CATG	1 cut(s)	355
FaiI	YATR	3 cut(s)	353, 392, 598
FalI	AAGNNNNNCTT	4 cut(s)	67, 99, 237, 269
FatI	CATG	1 cut(s)	351
FblI	GTMKAC	1 cut(s)	423
Fnu4HI	GCNGC	1 cut(s)	564
Fsp4HI	GCNGC	1 cut(s)	564
FspBI	CTAG	1 cut(s)	303
GluI	GCNGC	1 cut(s)	564
GsuI	CTGGAG	1 cut(s)	88
HaeIII	GGCC	2 cut(s)	327, 586
HapII	CCGG	3 cut(s)	270, 464, 482
HgaI	GACGC	1 cut(s)	346
Hin1II	CATG	1 cut(s)	355
HindIII	AAGCTT	1 cut(s)	386
HinfI	GANTC	4 cut(s)	128, 266, 519, 612
HpaII	CCGG	3 cut(s)	270, 464, 482
HphI	GGTGA	1 cut(s)	478
Hpy166II	GTNNAC	1 cut(s)	424
Hpy188I	TCNGA	3 cut(s)	492, 625, 639
Hpy188III	TCNNGA	2 cut(s)	191, 334
Hpy8I	GTNNAC	1 cut(s)	424
Hpy99I	CGWCG	1 cut(s)	299
HpyAV	CCTTC	5 cut(s)	171, 179, 199, 637, 641
HpyCH4III	ACNGT	4 cut(s)	295, 421, 526, 571
HpyCH4V	TGCA	6 cut(s)	123, 179, 322, 416, 475, 566
HpyF10VI	GCNNNNNNNGC	1 cut(s)	592
Hsp92II	CATG	1 cut(s)	355
Kzo9I	GATC	1 cut(s)	150
LguI	GCTCTTC	1 cut(s)	301
LmnI	GCTCC	1 cut(s)	433
Lsp1109I	GCAGC	1 cut(s)	550
LweI	GCATC	1 cut(s)	462
MaeI	CTAG	1 cut(s)	303
MaeIII	GTNAC	2 cut(s)	98, 169
MalI	GATC	1 cut(s)	152
MboI	GATC	1 cut(s)	150
MboII	GAAGA	4 cut(s)	275, 318, 481, 518
MlyI	GAGTC	1 cut(s)	621
MnlI	CCTC	3 cut(s)	19, 576, 633
MseI	TTAA	2 cut(s)	230, 278
MslI	CAYNNNNRTG	1 cut(s)	356
MspCI	CTTAAG	1 cut(s)	277
MspI	CCGG	3 cut(s)	270, 464, 482
MspR9I	CCNGG	2 cut(s)	34, 464
MvaI	CCWGG	1 cut(s)	34
MvnI	CGCG	1 cut(s)	243
MwoI	GCNNNNNNNGC	1 cut(s)	592
NciI	CCSGG	1 cut(s)	464
NdeII	GATC	1 cut(s)	150
NlaIII	CATG	1 cut(s)	355
NlaIV	GGNNCC	1 cut(s)	210
PciSI	GCTCTTC	1 cut(s)	301
PcsI	WCGNNNNNNNCGW	1 cut(s)	543
PfeI	GAWTC	3 cut(s)	128, 266, 519
PkrI	GCNGC	1 cut(s)	565
Ple19I	CGATCG	1 cut(s)	153
PleI	GAGTC	1 cut(s)	620
PpsI	GAGTC	1 cut(s)	620
Psp6I	CCWGG	1 cut(s)	32
PspGI	CCWGG	1 cut(s)	32
PspN4I	GGNNCC	1 cut(s)	210
PspPI	GGNCC	1 cut(s)	209
PvuI	CGATCG	1 cut(s)	153
RsaI	GTAC	1 cut(s)	159
RsaNI	GTAC	1 cut(s)	158
RseI	CAYNNNNRTG	1 cut(s)	356
SapI	GCTCTTC	1 cut(s)	301
SaqAI	TTAA	2 cut(s)	230, 278
SatI	GCNGC	1 cut(s)	564
Sau3AI	GATC	1 cut(s)	150
Sau96I	GGNCC	1 cut(s)	209
SchI	GAGTC	1 cut(s)	621
ScrFI	CCNGG	2 cut(s)	34, 464
SfaNI	GCATC	1 cut(s)	462
SinI	GGWCC	1 cut(s)	209
SmiMI	CAYNNNNRTG	1 cut(s)	356
SmlI	CTYRAG	3 cut(s)	73, 90, 277
SmoI	CTYRAG	3 cut(s)	73, 90, 277
SspMI	CTAG	1 cut(s)	303
StyD4I	CCNGG	2 cut(s)	32, 462
TaaI	ACNGT	4 cut(s)	295, 421, 526, 571
TaqI	TCGA	1 cut(s)	297
TfiI	GAWTC	3 cut(s)	128, 266, 519
Tru1I	TTAA	2 cut(s)	230, 278
Tru9I	TTAA	2 cut(s)	230, 278
TscAI	CASTG	1 cut(s)	529
TseI	GCWGC	1 cut(s)	563
TspGWI	ACGGA	1 cut(s)	441
TspRI	CASTG	1 cut(s)	529
Vha464I	CTTAAG	1 cut(s)	277
VpaK11BI	GGWCC	1 cut(s)	209
XmiI	GTMKAC	1 cut(s)	423
XspI	CTAG	1 cut(s)	303

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.