Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0014070

Physical Location & Seq

Genomic Coordinates Reverse (-)

70195128 .. 70197467

Gene Structure 2340 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG527000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGACTTACCCGCGAGAAGTAGTGGTGGAAAAGGAGGACTCTGGATTTCTAAGGGTCAAGAAAGCAGTGGAGTCGAGAAGGGCCAATCAAATGCACGGGCTTTTCAGGACACTTACGGACAATATGGTGGTGGGAGTATCCAAAGGATTTGAGAAGAGGCTACAGTTGATTGGCGTTGGTTATAGAGCAACACTAGAAGGGAGGATTTTGGTATTGAGTCTTGGGTTCTCTCATCCAGTTAGGATGGATCTTCCTGATGGCATACAAGTGAAGGTGGAAGAAAACACCAGAATCATAGTTAGTGGATATGACAAGAGTGAAATTGGTCAGTTTGCTGCTTCCATCAGGAAATGGAGACCTCCAGAGCCATACAAAGGTAAGGGAGTGAAATATGCTGATGAAATTGTAAGAAGAAAGGAAGGAAAAGCAGGAAAGAAGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0007275 GO:0008150 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009719 GO:0009725 GO:0009735 GO:0009790 GO:0009791 GO:0009793 GO:0009941 GO:0010033 GO:0010154 GO:0016020 GO:0022414 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L6

Protein Analysis

147

Amino Acids

16.65

Weight (kDa)

10.03

Isoelectric Point (pI)

36.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L6	PF00347	57 - 131	6.8e-24	Ribosomal protein L6

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014070)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05190
fragaria_vesca	FvH4_6g43280
malus_domestica	MD09G1107800.v1.1 MD09G1108400.v1.1 MD17G1096300.v1.1
prunus_persica	Prupe.1G100300_v2.0.a1
pyrus_communis	pycom09g03090 pycom17g09240
rosa_chinensis	RchiOBHm_Chr2g0159551
rosa_laevigata	RLG00000021165
rosa_multiflora	Rmu_sc0004260.1_g000004 Rmu_sc0012414.1_g000013
rosa_roxburghii	Rroxscaffold_2G00090410
rosa_rugosa	Rorug02G0476800
rosa_samantha	Rh2BG556800 Rh2CG527000
rosa_wichuraiana	Rw2G044970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	13
AciI	CCGC	1 cut(s)	11
AclWI	GGATC	1 cut(s)	255
AfiI	CCNNNNNNNGG	1 cut(s)	374
Alw26I	GTCTC	1 cut(s)	349
AlwI	GGATC	1 cut(s)	255
AoxI	GGCC	1 cut(s)	81
ApeKI	GCWGC	1 cut(s)	335
AspS9I	GGNCC	1 cut(s)	81
BbvI	GCAGC	1 cut(s)	322
BccI	CCATC	3 cut(s)	238, 251, 350
BcgI	CGANNNNNNTGC	2 cut(s)	54, 88
BciVI	GTATCC	1 cut(s)	148
BcoDI	GTCTC	1 cut(s)	349
BfaI	CTAG	1 cut(s)	194
BfmI	CTRYAG	1 cut(s)	161
BfuI	GTATCC	1 cut(s)	148
BisI	GCNGC	1 cut(s)	336
BlsI	GCNGC	1 cut(s)	337
BmgT120I	GGNCC	1 cut(s)	81
BpmI	CTGGAG	1 cut(s)	345
BsaI	GGTCTC	1 cut(s)	349
Bsc4I	CCNNNNNNNGG	1 cut(s)	374
Bse1I	ACTGG	1 cut(s)	236
BseGI	GGATG	2 cut(s)	232, 249
BseLI	CCNNNNNNNGG	1 cut(s)	374
BseNI	ACTGG	1 cut(s)	236
BseXI	GCAGC	1 cut(s)	322
Bsh1236I	CGCG	1 cut(s)	13
BshFI	GGCC	1 cut(s)	83
BslI	CCNNNNNNNGG	1 cut(s)	374
BsmAI	GTCTC	1 cut(s)	349
BsnI	GGCC	1 cut(s)	83
Bso31I	GGTCTC	1 cut(s)	349
Bsp143I	GATC	1 cut(s)	247
BspACI	CCGC	1 cut(s)	11
BspANI	GGCC	1 cut(s)	83
BspFNI	CGCG	1 cut(s)	13
BspPI	GGATC	1 cut(s)	255
BspTNI	GGTCTC	1 cut(s)	349
BsrI	ACTGG	1 cut(s)	236
BssMI	GATC	1 cut(s)	247
Bst4CI	ACNGT	1 cut(s)	165
Bst6I	CTCTTC	1 cut(s)	149
BstDEI	CTNAG	1 cut(s)	50
BstF5I	GGATG	2 cut(s)	232, 249
BstFNI	CGCG	1 cut(s)	13
BstKTI	GATC	1 cut(s)	250
BstMAI	GTCTC	1 cut(s)	349
BstMBI	GATC	1 cut(s)	247
BstSFI	CTRYAG	1 cut(s)	161
BstUI	CGCG	1 cut(s)	13
BstV1I	GCAGC	1 cut(s)	322
BstX2I	RGATCY	1 cut(s)	247
BstYI	RGATCY	1 cut(s)	247
BsuI	GTATCC	1 cut(s)	148
BsuRI	GGCC	1 cut(s)	83
BtsCI	GGATG	2 cut(s)	232, 249
BtsI	GCAGTG	1 cut(s)	72
BtsIMutI	CAGTG	1 cut(s)	72
Cfr13I	GGNCC	1 cut(s)	81
CviJI	RGCY	4 cut(s)	83, 100, 160, 367
CviKI_1	RGCY	4 cut(s)	83, 100, 160, 367
DdeI	CTNAG	1 cut(s)	50
DpnI	GATC	1 cut(s)	249
DpnII	GATC	1 cut(s)	247
Eam1104I	CTCTTC	1 cut(s)	149
EarI	CTCTTC	1 cut(s)	149
Eco31I	GGTCTC	1 cut(s)	349
FaiI	YATR	7 cut(s)	125, 183, 263, 296, 309, 370, 393
FauI	CCCGC	1 cut(s)	18
Fnu4HI	GCNGC	1 cut(s)	336
FokI	GGATG	2 cut(s)	219, 256
Fsp4HI	GCNGC	1 cut(s)	336
FspBI	CTAG	1 cut(s)	194
GluI	GCNGC	1 cut(s)	336
GsuI	CTGGAG	1 cut(s)	345
HaeIII	GGCC	1 cut(s)	83
HinfI	GANTC	4 cut(s)	38, 71, 217, 291
Hpy188III	TCNNGA	7 cut(s)	42, 58, 75, 106, 254, 346, 362
HpyAV	CCTTC	4 cut(s)	72, 191, 265, 413
HpyCH4III	ACNGT	1 cut(s)	165
HpyCH4V	TGCA	1 cut(s)	94
HpyF3I	CTNAG	1 cut(s)	50
Kzo9I	GATC	1 cut(s)	247
LpnPI	CCDG	8 cut(s)	27, 91, 249, 267, 301, 331, 375, 414
Lsp1109I	GCAGC	1 cut(s)	322
MaeI	CTAG	1 cut(s)	194
MalI	GATC	1 cut(s)	249
MboI	GATC	1 cut(s)	247
MboII	GAAGA	4 cut(s)	166, 242, 290, 423
MflI	RGATCY	1 cut(s)	247
MluCI	AATT	2 cut(s)	321, 402
MlyI	GAGTC	3 cut(s)	32, 80, 226
MnlI	CCTC	4 cut(s)	28, 150, 195, 369
MslI	CAYNNNNRTG	1 cut(s)	266
MvnI	CGCG	1 cut(s)	13
NdeII	GATC	1 cut(s)	247
PfeI	GAWTC	1 cut(s)	291
PkrI	GCNGC	1 cut(s)	337
PleI	GAGTC	3 cut(s)	32, 79, 225
PpsI	GAGTC	3 cut(s)	32, 79, 225
PspPI	GGNCC	1 cut(s)	81
PsuI	RGATCY	1 cut(s)	247
RseI	CAYNNNNRTG	1 cut(s)	266
SatI	GCNGC	1 cut(s)	336
Sau3AI	GATC	1 cut(s)	247
Sau96I	GGNCC	1 cut(s)	81
SchI	GAGTC	3 cut(s)	32, 80, 226
SetI	ASST	3 cut(s)	276, 361, 379
SfcI	CTRYAG	1 cut(s)	161
SmiMI	CAYNNNNRTG	1 cut(s)	266
Sse9I	AATT	2 cut(s)	321, 402
SsiI	CCGC	1 cut(s)	11
SspMI	CTAG	1 cut(s)	194
TaaI	ACNGT	1 cut(s)	165
TaqI	TCGA	1 cut(s)	74
TasI	AATT	2 cut(s)	321, 402
TfiI	GAWTC	1 cut(s)	291
TscAI	CASTG	1 cut(s)	72
TseI	GCWGC	1 cut(s)	335
TspDTI	ATGAA	1 cut(s)	414
TspGWI	ACGGA	1 cut(s)	131
TspRI	CASTG	1 cut(s)	72
XspI	CTAG	1 cut(s)	194

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.