Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0014070

Physical Location & Seq

Genomic Coordinates Forward (+)

8026525 .. 8028672

Gene Structure 2148 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1108400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGGCCTCCTCACTCACCTCATCTTTCCAAACCAGATCCTTTTTGCTATCACGTTTCAGCAATTTGCGGTCTGCTTTTTTGGGCAAGAGAAACGGATTCTCTGTTTGTAGCGTACCTGTATCTCATGTCAAGTTTTTGAAGAAGACAATAGAGTGTAAGGAATCACGAATTGGAAAGCAGCCAATTGAAGTACCATCCAATGTGACAATCACTTTGGAAGGACAGGCTTTGGCAGTAAAGGGACCATTGGGGCAGCTTTCACTAACTTACCCGCGAGAAGTGCTGGTTCAGAAGGAGGATTCTGGGGCTCTAAGGGTCAGAAAGGCAGTAGAGACTAGAAGGGCCAATCAAATGCATGGCCTTTTCAGGACGCTTACGGACAACATGGTGGTGGGGGTGTCAAAAGGATTTGATAAGAGGTTGCAACTGGTAGGCGTCGGTTATCGAGCTACTTTAGAAGGAAAGATCCTGGTACTAAGTCTTGGGTTCTCCCATCCAGTTAGGATGGATATCCCTGATGGCATACAAGTCAAGGTCGAAGAAAACACCAGAATCGTTGTTAGCGGATACGACAAGAGTGCCATCGGTCAGTTTGCTGCGTCGATCAGGAAATGGAGACCCCCGGAACCGTACAAAGGTAAGGGTGTGAAATATGCTGATGAAATCATAAGAAGGAAGGAGGGAAAAGCAGGGAAGAAGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0007275 GO:0008150 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009719 GO:0009725 GO:0009735 GO:0009790 GO:0009791 GO:0009793 GO:0009941 GO:0010033 GO:0010154 GO:0016020 GO:0022414 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L6

Protein Analysis

235

Amino Acids

25.92

Weight (kDa)

10.3

Isoelectric Point (pI)

41.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L6	PF00347	64 - 136	7.3e-13	Ribosomal protein L6
Ribosomal_L6	PF00347	144 - 218	4.5e-24	Ribosomal protein L6

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014070)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05190
fragaria_vesca	FvH4_6g43280
malus_domestica	MD09G1107800.v1.1 MD09G1108400.v1.1 MD17G1096300.v1.1
prunus_persica	Prupe.1G100300_v2.0.a1
pyrus_communis	pycom09g03090 pycom17g09240
rosa_chinensis	RchiOBHm_Chr2g0159551
rosa_laevigata	RLG00000021165
rosa_multiflora	Rmu_sc0004260.1_g000004 Rmu_sc0012414.1_g000013
rosa_roxburghii	Rroxscaffold_2G00090410
rosa_rugosa	Rorug02G0476800
rosa_samantha	Rh2BG556800 Rh2CG527000
rosa_wichuraiana	Rw2G044970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	274
AciI	CCGC	3 cut(s)	67, 272, 564
AclWI	GGATC	2 cut(s)	30, 460
AcyI	GRCGYC	1 cut(s)	435
AfaI	GTAC	4 cut(s)	114, 192, 474, 632
AfiI	CCNNNNNNNGG	1 cut(s)	635
AgsI	TTSAA	2 cut(s)	139, 188
AjnI	CCWGG	1 cut(s)	468
AjuI	GAANNNNNNNTTGG	2 cut(s)	153, 185
AluBI	AGCT	2 cut(s)	256, 449
AluI	AGCT	2 cut(s)	256, 449
Alw26I	GTCTC	2 cut(s)	326, 610
AlwI	GGATC	2 cut(s)	30, 460
AoxI	GGCC	3 cut(s)	3, 342, 358
ApeKI	GCWGC	3 cut(s)	178, 253, 596
ArsI	GACNNNNNNTTYG	2 cut(s)	196, 228
AspS9I	GGNCC	2 cut(s)	242, 342
AsuC2I	CCSGG	1 cut(s)	623
AsuHPI	GGTGA	1 cut(s)	7
AvaII	GGWCC	1 cut(s)	242
BanII	GRGCYC	1 cut(s)	310
BbsI	GAAGAC	1 cut(s)	149
BbvI	GCAGC	3 cut(s)	190, 265, 583
BccI	CCATC	5 cut(s)	202, 499, 501, 512, 590
BcgI	CGANNNNNNTGC	2 cut(s)	560, 594
BciT130I	CCWGG	1 cut(s)	470
BciVI	GTATCC	1 cut(s)	560
BcnI	CCSGG	1 cut(s)	623
BcoDI	GTCTC	2 cut(s)	326, 610
BfaI	CTAG	1 cut(s)	336
BfuI	GTATCC	1 cut(s)	560
BisI	GCNGC	3 cut(s)	179, 254, 597
BlsI	GCNGC	3 cut(s)	180, 255, 598
Bme1390I	CCNGG	2 cut(s)	470, 623
Bme18I	GGWCC	1 cut(s)	242
BmgT120I	GGNCC	2 cut(s)	242, 342
BmiI	GGNNCC	2 cut(s)	243, 627
BmrFI	CCNGG	2 cut(s)	470, 623
BpiI	GAAGAC	1 cut(s)	149
BpuMI	CCSGG	1 cut(s)	623
BsaBI	GATNNNNATC	1 cut(s)	509
BsaHI	GRCGYC	1 cut(s)	435
BsaI	GGTCTC	1 cut(s)	610
BsaJI	CCNNGG	1 cut(s)	621
Bsc4I	CCNNNNNNNGG	1 cut(s)	635
Bse1I	ACTGG	2 cut(s)	432, 497
Bse8I	GATNNNNATC	1 cut(s)	509
BseBI	CCWGG	1 cut(s)	470
BseDI	CCNNGG	1 cut(s)	621
BseGI	GGATG	3 cut(s)	194, 493, 510
BseJI	GATNNNNATC	1 cut(s)	509
BseLI	CCNNNNNNNGG	1 cut(s)	635
BseNI	ACTGG	2 cut(s)	432, 497
BseXI	GCAGC	3 cut(s)	190, 265, 583
Bsh1236I	CGCG	1 cut(s)	274
BshFI	GGCC	3 cut(s)	5, 344, 360
BsiSI	CCGG	1 cut(s)	623
BslFI	GGGAC	1 cut(s)	255
BslI	CCNNNNNNNGG	1 cut(s)	635
BsmAI	GTCTC	2 cut(s)	326, 610
BsmFI	GGGAC	1 cut(s)	255
BsnI	GGCC	3 cut(s)	5, 344, 360
Bso31I	GGTCTC	1 cut(s)	610
Bsp1286I	GDGCHC	1 cut(s)	310
Bsp143I	GATC	3 cut(s)	35, 465, 603
BspACI	CCGC	3 cut(s)	67, 272, 564
BspANI	GGCC	3 cut(s)	5, 344, 360
BspFNI	CGCG	1 cut(s)	274
BspLI	GGNNCC	2 cut(s)	243, 627
BspPI	GGATC	2 cut(s)	30, 460
BspTNI	GGTCTC	1 cut(s)	610
BsrI	ACTGG	2 cut(s)	432, 497
BssECI	CCNNGG	1 cut(s)	621
BssMI	GATC	3 cut(s)	35, 465, 603
BssNI	GRCGYC	1 cut(s)	435
Bst2UI	CCWGG	1 cut(s)	470
Bst4CI	ACNGT	1 cut(s)	630
BstACI	GRCGYC	1 cut(s)	435
BstDEI	CTNAG	2 cut(s)	311, 476
BstF5I	GGATG	3 cut(s)	194, 493, 510
BstFNI	CGCG	1 cut(s)	274
BstKTI	GATC	3 cut(s)	38, 468, 606
BstMAI	GTCTC	2 cut(s)	326, 610
BstMBI	GATC	3 cut(s)	35, 465, 603
BstMWI	GCNNNNNNNGC	1 cut(s)	280
BstNI	CCWGG	1 cut(s)	470
BstSCI	CCNGG	2 cut(s)	468, 621
BstUI	CGCG	1 cut(s)	274
BstV1I	GCAGC	3 cut(s)	190, 265, 583
BstV2I	GAAGAC	1 cut(s)	149
BstX2I	RGATCY	2 cut(s)	35, 465
BstYI	RGATCY	2 cut(s)	35, 465
BsuI	GTATCC	1 cut(s)	560
BsuRI	GGCC	3 cut(s)	5, 344, 360
BtsCI	GGATG	3 cut(s)	194, 493, 510
Cfr13I	GGNCC	2 cut(s)	242, 342
CseI	GACGC	3 cut(s)	379, 424, 588
Csp6I	GTAC	4 cut(s)	113, 191, 473, 631
CviAII	CATG	3 cut(s)	125, 356, 385
CviJI	RGCY	8 cut(s)	5, 181, 227, 256, 308, 344, 360, 449
CviKI_1	RGCY	8 cut(s)	5, 181, 227, 256, 308, 344, 360, 449
CviQI	GTAC	4 cut(s)	113, 191, 473, 631
DdeI	CTNAG	2 cut(s)	311, 476
DpnI	GATC	3 cut(s)	37, 467, 605
DpnII	GATC	3 cut(s)	35, 465, 603
Eco24I	GRGCYC	1 cut(s)	310
Eco31I	GGTCTC	1 cut(s)	610
Eco32I	GATATC	1 cut(s)	511
Eco47I	GGWCC	1 cut(s)	242
EcoRII	CCWGG	1 cut(s)	468
EcoRV	GATATC	1 cut(s)	511
EcoT22I	ATGCAT	1 cut(s)	357
EcoT38I	GRGCYC	1 cut(s)	310
FaeI	CATG	3 cut(s)	128, 359, 388
FaiI	YATR	6 cut(s)	126, 357, 386, 524, 654, 668
FaqI	GGGAC	1 cut(s)	255
FatI	CATG	3 cut(s)	124, 355, 384
FauI	CCCGC	1 cut(s)	279
Fnu4HI	GCNGC	3 cut(s)	179, 254, 597
FokI	GGATG	3 cut(s)	181, 480, 517
FriOI	GRGCYC	1 cut(s)	310
Fsp4HI	GCNGC	3 cut(s)	179, 254, 597
FspBI	CTAG	1 cut(s)	336
GluI	GCNGC	3 cut(s)	179, 254, 597
HaeIII	GGCC	3 cut(s)	5, 344, 360
HapII	CCGG	1 cut(s)	623
HgaI	GACGC	3 cut(s)	379, 424, 588
Hin1I	GRCGYC	1 cut(s)	435
Hin1II	CATG	3 cut(s)	128, 359, 388
HinfI	GANTC	4 cut(s)	96, 161, 299, 552
HpaII	CCGG	1 cut(s)	623
HphI	GGTGA	1 cut(s)	7
Hpy188I	TCNGA	2 cut(s)	291, 320
Hpy188III	TCNNGA	3 cut(s)	165, 367, 607
Hpy99I	CGWCG	2 cut(s)	440, 604
HpyAV	CCTTC	6 cut(s)	212, 286, 333, 452, 666, 670
HpyCH4III	ACNGT	1 cut(s)	630
HpyCH4IV	ACGT	1 cut(s)	52
HpyCH4V	TGCA	2 cut(s)	355, 424
HpyF10VI	GCNNNNNNNGC	1 cut(s)	280
HpyF3I	CTNAG	2 cut(s)	311, 476
HpySE526I	ACGT	1 cut(s)	52
Hsp92I	GRCGYC	1 cut(s)	435
Hsp92II	CATG	3 cut(s)	128, 359, 388
Kzo9I	GATC	3 cut(s)	35, 465, 603
Lsp1109I	GCAGC	3 cut(s)	190, 265, 583
MaeI	CTAG	1 cut(s)	336
MaeII	ACGT	1 cut(s)	52
MaeIII	GTNAC	1 cut(s)	202
MalI	GATC	3 cut(s)	37, 467, 605
MboI	GATC	3 cut(s)	35, 465, 603
MboII	GAAGA	3 cut(s)	151, 154, 551
MfeI	CAATTG	1 cut(s)	183
MflI	RGATCY	2 cut(s)	35, 465
MhlI	GDGCHC	1 cut(s)	310
MluCI	AATT	3 cut(s)	61, 168, 183
MnlI	CCTC	6 cut(s)	16, 19, 28, 289, 411, 673
Mph1103I	ATGCAT	1 cut(s)	357
MslI	CAYNNNNRTG	1 cut(s)	389
MspI	CCGG	1 cut(s)	623
MspR9I	CCNGG	2 cut(s)	470, 623
MunI	CAATTG	1 cut(s)	183
MvaI	CCWGG	1 cut(s)	470
MvnI	CGCG	1 cut(s)	274
MwoI	GCNNNNNNNGC	1 cut(s)	280
NciI	CCSGG	1 cut(s)	623
NdeII	GATC	3 cut(s)	35, 465, 603
NlaIII	CATG	3 cut(s)	128, 359, 388
NlaIV	GGNNCC	2 cut(s)	243, 627
NmuCI	GTSAC	1 cut(s)	202
NsiI	ATGCAT	1 cut(s)	357
PfeI	GAWTC	4 cut(s)	96, 161, 299, 552
PkrI	GCNGC	3 cut(s)	180, 255, 598
Psp6I	CCWGG	1 cut(s)	468
PspGI	CCWGG	1 cut(s)	468
PspN4I	GGNNCC	2 cut(s)	243, 627
PspPI	GGNCC	2 cut(s)	242, 342
PsuI	RGATCY	2 cut(s)	35, 465
RsaI	GTAC	4 cut(s)	114, 192, 474, 632
RsaNI	GTAC	4 cut(s)	113, 191, 473, 631
RseI	CAYNNNNRTG	1 cut(s)	389
SatI	GCNGC	3 cut(s)	179, 254, 597
Sau3AI	GATC	3 cut(s)	35, 465, 603
Sau96I	GGNCC	2 cut(s)	242, 342
ScrFI	CCNGG	2 cut(s)	470, 623
SduI	GDGCHC	1 cut(s)	310
SetI	ASST	8 cut(s)	20, 55, 118, 258, 422, 451, 537, 640
SinI	GGWCC	1 cut(s)	242
SmiMI	CAYNNNNRTG	1 cut(s)	389
Sse9I	AATT	3 cut(s)	61, 168, 183
SsiI	CCGC	3 cut(s)	67, 272, 564
SspMI	CTAG	1 cut(s)	336
StyD4I	CCNGG	2 cut(s)	468, 621
TaaI	ACNGT	1 cut(s)	630
TaiI	ACGT	1 cut(s)	55
TaqI	TCGA	3 cut(s)	445, 537, 602
TaqII	GACCGA	1 cut(s)	575
TasI	AATT	3 cut(s)	61, 168, 183
TfiI	GAWTC	4 cut(s)	96, 161, 299, 552
TseFI	GTSAC	1 cut(s)	202
TseI	GCWGC	3 cut(s)	178, 253, 596
Tsp45I	GTSAC	1 cut(s)	202
TspDTI	ATGAA	1 cut(s)	675
TspGWI	ACGGA	2 cut(s)	108, 392
VpaK11BI	GGWCC	1 cut(s)	242
XspI	CTAG	1 cut(s)	336
Zsp2I	ATGCAT	1 cut(s)	357

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.