Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0014070

Physical Location & Seq

Genomic Coordinates Forward (+)

2293908 .. 2295695

Gene Structure 1788 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g03090.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGGCCTCCTCACTCACCTCATCTTTCCAAACCAACAATTTGCGGTCTGCTTTTTTGGGCGAGAGAAACGGGTTCTCTGTTTGTAGTGTACCTGTATCTCATGTCGGGTTTTTGAAGAAGACAATAGAGTGTAAGGAATCACGAATTGGAAAGCAGCCAATTGAAGTACCATCCAATGTGACAATTTCTTTGGAAGGACAGGCTTTGGCAGTAAAGGGACCATTGGGGCAGCTTTCACTAACTTACCCGCGAGAAGTGCTGGTTCAGAAGGAGGATTCTGGGGCTCTAAGGGTCAGAAAGGCAGTAGAGACTAGAAGAGCCAATCAAATGCATGGCCTTTTCAGGACGCTTACGGACAACATGGTGGTGGGGGTGTCAAAAGGATTTGATAAGAGGTTGCAATTGGTAGGCGTCGGTTATCGAGCTACTTTAGAAGGAAAGATCTTGGTACTAAGTCTTGGATTCTCCCATCCGGTTAGGATGGATATCCCTGATGGTATACAAGTCAAGGTCGAAGAAATCACCAGAATCGTTGTTAGCGGATACGACAAGAGTGCTATAGGTCAGTTTGCTGCGTCGATCAGGAAATGGAGACCCCCGGAACCGTACAAAGGTAAGGGTGTGAAATATGCTGATGAAATCATAAGAAGGAAGGAGGGAAAAGCAGGGAAGAAGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0007275 GO:0008150 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009719 GO:0009725 GO:0009735 GO:0009790 GO:0009791 GO:0009793 GO:0009941 GO:0010033 GO:0010154 GO:0016020 GO:0022414 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L6

Protein Analysis

227

Amino Acids

24.85

Weight (kDa)

10.06

Isoelectric Point (pI)

38.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L6	PF00347	56 - 128	6.3e-13	Ribosomal protein L6
Ribosomal_L6	PF00347	136 - 210	2.7e-24	Ribosomal protein L6

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014070)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05190
fragaria_vesca	FvH4_6g43280
malus_domestica	MD09G1107800.v1.1 MD09G1108400.v1.1 MD17G1096300.v1.1
prunus_persica	Prupe.1G100300_v2.0.a1
pyrus_communis	pycom09g03090 pycom17g09240
rosa_chinensis	RchiOBHm_Chr2g0159551
rosa_laevigata	RLG00000021165
rosa_multiflora	Rmu_sc0004260.1_g000004 Rmu_sc0012414.1_g000013
rosa_roxburghii	Rroxscaffold_2G00090410
rosa_rugosa	Rorug02G0476800
rosa_samantha	Rh2BG556800 Rh2CG527000
rosa_wichuraiana	Rw2G044970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	499
AccII	CGCG	1 cut(s)	250
AciI	CCGC	3 cut(s)	43, 248, 540
AcyI	GRCGYC	1 cut(s)	411
AfaI	GTAC	4 cut(s)	90, 168, 450, 608
AfiI	CCNNNNNNNGG	1 cut(s)	611
AgsI	TTSAA	2 cut(s)	115, 164
AjuI	GAANNNNNNNTTGG	2 cut(s)	129, 161
AluBI	AGCT	2 cut(s)	232, 425
AluI	AGCT	2 cut(s)	232, 425
Alw26I	GTCTC	2 cut(s)	302, 586
AoxI	GGCC	2 cut(s)	3, 334
ApeKI	GCWGC	3 cut(s)	154, 229, 572
ArsI	GACNNNNNNTTYG	2 cut(s)	172, 204
AspS9I	GGNCC	1 cut(s)	218
AsuC2I	CCSGG	1 cut(s)	599
AsuHPI	GGTGA	2 cut(s)	7, 514
AvaII	GGWCC	1 cut(s)	218
BanII	GRGCYC	1 cut(s)	286
BbsI	GAAGAC	1 cut(s)	125
BbvI	GCAGC	3 cut(s)	166, 241, 559
BccI	CCATC	4 cut(s)	178, 475, 477, 488
BcgI	CGANNNNNNTGC	2 cut(s)	536, 570
BciVI	GTATCC	1 cut(s)	536
BcnI	CCSGG	1 cut(s)	599
BcoDI	GTCTC	2 cut(s)	302, 586
BfaI	CTAG	1 cut(s)	312
BfmI	CTRYAG	1 cut(s)	558
BfuI	GTATCC	1 cut(s)	536
BglII	AGATCT	1 cut(s)	441
BisI	GCNGC	3 cut(s)	155, 230, 573
BlsI	GCNGC	3 cut(s)	156, 231, 574
Bme1390I	CCNGG	1 cut(s)	599
Bme18I	GGWCC	1 cut(s)	218
BmgT120I	GGNCC	1 cut(s)	218
BmiI	GGNNCC	2 cut(s)	219, 603
BmrFI	CCNGG	1 cut(s)	599
BpiI	GAAGAC	1 cut(s)	125
BpuMI	CCSGG	1 cut(s)	599
BsaBI	GATNNNNATC	1 cut(s)	485
BsaHI	GRCGYC	1 cut(s)	411
BsaI	GGTCTC	1 cut(s)	586
BsaJI	CCNNGG	1 cut(s)	597
BsaWI	WCCGGW	1 cut(s)	472
Bsc4I	CCNNNNNNNGG	1 cut(s)	611
Bse8I	GATNNNNATC	1 cut(s)	485
BseDI	CCNNGG	1 cut(s)	597
BseGI	GGATG	3 cut(s)	170, 469, 486
BseJI	GATNNNNATC	1 cut(s)	485
BseLI	CCNNNNNNNGG	1 cut(s)	611
BseXI	GCAGC	3 cut(s)	166, 241, 559
Bsh1236I	CGCG	1 cut(s)	250
BshFI	GGCC	2 cut(s)	5, 336
BsiSI	CCGG	2 cut(s)	473, 599
BslFI	GGGAC	1 cut(s)	231
BslI	CCNNNNNNNGG	1 cut(s)	611
BsmAI	GTCTC	2 cut(s)	302, 586
BsmFI	GGGAC	1 cut(s)	231
BsnI	GGCC	2 cut(s)	5, 336
Bso31I	GGTCTC	1 cut(s)	586
Bsp1286I	GDGCHC	1 cut(s)	286
Bsp143I	GATC	2 cut(s)	441, 579
BspACI	CCGC	3 cut(s)	43, 248, 540
BspANI	GGCC	2 cut(s)	5, 336
BspFNI	CGCG	1 cut(s)	250
BspLI	GGNNCC	2 cut(s)	219, 603
BspQI	GCTCTTC	1 cut(s)	310
BspTNI	GGTCTC	1 cut(s)	586
BssECI	CCNNGG	1 cut(s)	597
BssMI	GATC	2 cut(s)	441, 579
BssNAI	GTATAC	1 cut(s)	500
BssNI	GRCGYC	1 cut(s)	411
Bst1107I	GTATAC	1 cut(s)	500
Bst4CI	ACNGT	1 cut(s)	606
Bst6I	CTCTTC	1 cut(s)	310
BstACI	GRCGYC	1 cut(s)	411
BstDEI	CTNAG	2 cut(s)	287, 452
BstF5I	GGATG	3 cut(s)	170, 469, 486
BstFNI	CGCG	1 cut(s)	250
BstKTI	GATC	2 cut(s)	444, 582
BstMAI	GTCTC	2 cut(s)	302, 586
BstMBI	GATC	2 cut(s)	441, 579
BstMWI	GCNNNNNNNGC	1 cut(s)	256
BstSCI	CCNGG	1 cut(s)	597
BstSFI	CTRYAG	1 cut(s)	558
BstUI	CGCG	1 cut(s)	250
BstV1I	GCAGC	3 cut(s)	166, 241, 559
BstV2I	GAAGAC	1 cut(s)	125
BstX2I	RGATCY	1 cut(s)	441
BstYI	RGATCY	1 cut(s)	441
BstZ17I	GTATAC	1 cut(s)	500
BsuI	GTATCC	1 cut(s)	536
BsuRI	GGCC	2 cut(s)	5, 336
BtsCI	GGATG	3 cut(s)	170, 469, 486
Cfr13I	GGNCC	1 cut(s)	218
CseI	GACGC	3 cut(s)	355, 400, 564
Csp6I	GTAC	4 cut(s)	89, 167, 449, 607
CviAII	CATG	3 cut(s)	101, 332, 361
CviJI	RGCY	8 cut(s)	5, 157, 203, 232, 284, 320, 336, 425
CviKI_1	RGCY	8 cut(s)	5, 157, 203, 232, 284, 320, 336, 425
CviQI	GTAC	4 cut(s)	89, 167, 449, 607
DdeI	CTNAG	2 cut(s)	287, 452
DpnI	GATC	2 cut(s)	443, 581
DpnII	GATC	2 cut(s)	441, 579
Eam1104I	CTCTTC	1 cut(s)	310
EarI	CTCTTC	1 cut(s)	310
Eco24I	GRGCYC	1 cut(s)	286
Eco31I	GGTCTC	1 cut(s)	586
Eco32I	GATATC	1 cut(s)	487
Eco47I	GGWCC	1 cut(s)	218
EcoRV	GATATC	1 cut(s)	487
EcoT22I	ATGCAT	1 cut(s)	333
EcoT38I	GRGCYC	1 cut(s)	286
FaeI	CATG	3 cut(s)	104, 335, 364
FaiI	YATR	7 cut(s)	102, 333, 362, 500, 560, 630, 644
FaqI	GGGAC	1 cut(s)	231
FatI	CATG	3 cut(s)	100, 331, 360
FauI	CCCGC	1 cut(s)	255
FblI	GTMKAC	1 cut(s)	499
Fnu4HI	GCNGC	3 cut(s)	155, 230, 573
FokI	GGATG	3 cut(s)	157, 456, 493
FriOI	GRGCYC	1 cut(s)	286
Fsp4HI	GCNGC	3 cut(s)	155, 230, 573
FspBI	CTAG	1 cut(s)	312
GluI	GCNGC	3 cut(s)	155, 230, 573
HaeIII	GGCC	2 cut(s)	5, 336
HapII	CCGG	2 cut(s)	473, 599
HgaI	GACGC	3 cut(s)	355, 400, 564
Hin1I	GRCGYC	1 cut(s)	411
Hin1II	CATG	3 cut(s)	104, 335, 364
HinfI	GANTC	4 cut(s)	137, 275, 462, 528
HpaII	CCGG	2 cut(s)	473, 599
HphI	GGTGA	2 cut(s)	7, 514
Hpy166II	GTNNAC	2 cut(s)	89, 500
Hpy188I	TCNGA	2 cut(s)	267, 296
Hpy188III	TCNNGA	3 cut(s)	141, 343, 583
Hpy8I	GTNNAC	2 cut(s)	89, 500
Hpy99I	CGWCG	2 cut(s)	416, 580
HpyAV	CCTTC	5 cut(s)	188, 262, 428, 642, 646
HpyCH4III	ACNGT	1 cut(s)	606
HpyCH4V	TGCA	2 cut(s)	331, 400
HpyF10VI	GCNNNNNNNGC	1 cut(s)	256
HpyF3I	CTNAG	2 cut(s)	287, 452
Hsp92I	GRCGYC	1 cut(s)	411
Hsp92II	CATG	3 cut(s)	104, 335, 364
Kzo9I	GATC	2 cut(s)	441, 579
LguI	GCTCTTC	1 cut(s)	310
Lsp1109I	GCAGC	3 cut(s)	166, 241, 559
MaeI	CTAG	1 cut(s)	312
MaeIII	GTNAC	1 cut(s)	178
MalI	GATC	2 cut(s)	443, 581
MboI	GATC	2 cut(s)	441, 579
MboII	GAAGA	4 cut(s)	127, 130, 327, 527
MfeI	CAATTG	2 cut(s)	159, 401
MflI	RGATCY	1 cut(s)	441
MhlI	GDGCHC	1 cut(s)	286
MluCI	AATT	5 cut(s)	37, 144, 159, 183, 401
MnlI	CCTC	6 cut(s)	16, 19, 28, 265, 387, 649
Mph1103I	ATGCAT	1 cut(s)	333
MslI	CAYNNNNRTG	1 cut(s)	365
MspI	CCGG	2 cut(s)	473, 599
MspR9I	CCNGG	1 cut(s)	599
MunI	CAATTG	2 cut(s)	159, 401
MvnI	CGCG	1 cut(s)	250
MwoI	GCNNNNNNNGC	1 cut(s)	256
NciI	CCSGG	1 cut(s)	599
NdeII	GATC	2 cut(s)	441, 579
NlaIII	CATG	3 cut(s)	104, 335, 364
NlaIV	GGNNCC	2 cut(s)	219, 603
NmuCI	GTSAC	1 cut(s)	178
NsiI	ATGCAT	1 cut(s)	333
PciSI	GCTCTTC	1 cut(s)	310
PfeI	GAWTC	4 cut(s)	137, 275, 462, 528
PkrI	GCNGC	3 cut(s)	156, 231, 574
PspN4I	GGNNCC	2 cut(s)	219, 603
PspPI	GGNCC	1 cut(s)	218
PsuI	RGATCY	1 cut(s)	441
RsaI	GTAC	4 cut(s)	90, 168, 450, 608
RsaNI	GTAC	4 cut(s)	89, 167, 449, 607
RseI	CAYNNNNRTG	1 cut(s)	365
SapI	GCTCTTC	1 cut(s)	310
SatI	GCNGC	3 cut(s)	155, 230, 573
Sau3AI	GATC	2 cut(s)	441, 579
Sau96I	GGNCC	1 cut(s)	218
ScrFI	CCNGG	1 cut(s)	599
SduI	GDGCHC	1 cut(s)	286
SetI	ASST	8 cut(s)	20, 94, 234, 398, 427, 513, 565, 616
SfcI	CTRYAG	1 cut(s)	558
SinI	GGWCC	1 cut(s)	218
SmiMI	CAYNNNNRTG	1 cut(s)	365
Sse9I	AATT	5 cut(s)	37, 144, 159, 183, 401
SsiI	CCGC	3 cut(s)	43, 248, 540
SspMI	CTAG	1 cut(s)	312
StyD4I	CCNGG	1 cut(s)	597
TaaI	ACNGT	1 cut(s)	606
TaqI	TCGA	3 cut(s)	421, 513, 578
TasI	AATT	5 cut(s)	37, 144, 159, 183, 401
TfiI	GAWTC	4 cut(s)	137, 275, 462, 528
TseFI	GTSAC	1 cut(s)	178
TseI	GCWGC	3 cut(s)	154, 229, 572
Tsp45I	GTSAC	1 cut(s)	178
TspDTI	ATGAA	1 cut(s)	651
TspGWI	ACGGA	1 cut(s)	368
VpaK11BI	GGWCC	1 cut(s)	218
XmiI	GTMKAC	1 cut(s)	499
XspI	CTAG	1 cut(s)	312
Zsp2I	ATGCAT	1 cut(s)	333

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.