Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0014070

Physical Location & Seq

Genomic Coordinates Reverse (-)

76727805 .. 76730070

Gene Structure 2266 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG556800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGGCTTCCCCAATCACTTCGTCTTTCCAAACCAGCAATTTGCGGTCGGCTTTTCTGGGCGAAAGAAAGGGTTTCGTTGTTTACAGTGCTCCTGCAAGTAATGTTGGGTTTTTGAAGAAGACTGTGGAATGTAAGGAATCGAGAATCGGGAAGCAACCGATTGAAGTGCCCAACAATGTGACACTGAAATTGGAAGGTCAGGCTCTGGAAGTAAAGGGCCCTTTGGGGCAGCTCTCGATGACTTACCCACGAGAAGTAGTGGTGGAAAAGGAGGACTCTGGATTTCTAAGGGTCAAGAAAGCAGTGGAGACGAGAAGGGCCAATCAAATGCACGGCCTTTTCAGGACACTTACGGACAATATGGTGGTGGGAGTATCCAAAGGATTTGAGAAGAGGCTACAGTTGATTGGCGTTGGTTATAGAGCAACGCTAGAAGGGAGGATTTTGGTATTGAGTCTTGGGTTCTCCCATCCAGTTAGGATGGATCTTCCTGATGGCATACAAGTGAAGGTGGAAGAAAACACCAGAATCATAGTTAGTGGATATGACAAGAGTGAAATTGGTCAGTTTGCTGCTTCCATCAGGAAATGGAGACCTCCAGAGCCATACAAAGGTAAGGGAGTGAAATATGCTGATGAAATTGTAAGAAGAAAGGAAGGAAAAGCAGGAAAGAAGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0007275 GO:0008150 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009719 GO:0009725 GO:0009735 GO:0009790 GO:0009791 GO:0009793 GO:0009941 GO:0010033 GO:0010154 GO:0016020 GO:0022414 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L6

Protein Analysis

226

Amino Acids

25.12

Weight (kDa)

9.97

Isoelectric Point (pI)

38.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L6	PF00347	56 - 128	7.9e-13	Ribosomal protein L6
Ribosomal_L6	PF00347	136 - 210	1.8e-23	Ribosomal protein L6

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0014070)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05190
fragaria_vesca	FvH4_6g43280
malus_domestica	MD09G1107800.v1.1 MD09G1108400.v1.1 MD17G1096300.v1.1
prunus_persica	Prupe.1G100300_v2.0.a1
pyrus_communis	pycom09g03090 pycom17g09240
rosa_chinensis	RchiOBHm_Chr2g0159551
rosa_laevigata	RLG00000021165
rosa_multiflora	Rmu_sc0004260.1_g000004 Rmu_sc0012414.1_g000013
rosa_roxburghii	Rroxscaffold_2G00090410
rosa_rugosa	Rorug02G0476800
rosa_samantha	Rh2BG556800 Rh2CG527000
rosa_wichuraiana	Rw2G044970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	43
AclWI	GGATC	1 cut(s)	492
AfiI	CCNNNNNNNGG	1 cut(s)	611
AgsI	TTSAA	2 cut(s)	115, 164
AluBI	AGCT	1 cut(s)	232
AluI	AGCT	1 cut(s)	232
Alw21I	GWGCWC	1 cut(s)	91
Alw26I	GTCTC	2 cut(s)	302, 586
AlwI	GGATC	1 cut(s)	492
AlwNI	CAGNNNCTG	1 cut(s)	205
AoxI	GGCC	3 cut(s)	217, 318, 334
ApaI	GGGCCC	1 cut(s)	221
ApeKI	GCWGC	2 cut(s)	229, 572
AspS9I	GGNCC	3 cut(s)	217, 218, 318
BaeGI	GKGCMC	2 cut(s)	171, 221
BanII	GRGCYC	1 cut(s)	221
BauI	CACGAG	1 cut(s)	249
BbsI	GAAGAC	1 cut(s)	125
Bbv12I	GWGCWC	1 cut(s)	91
BbvI	GCAGC	2 cut(s)	241, 559
BccI	CCATC	4 cut(s)	475, 477, 488, 587
BceAI	ACGGC	1 cut(s)	349
BcgI	CGANNNNNNTGC	2 cut(s)	148, 182
BciVI	GTATCC	1 cut(s)	385
BcoDI	GTCTC	2 cut(s)	302, 586
BfaI	CTAG	1 cut(s)	431
BfmI	CTRYAG	1 cut(s)	398
BfuI	GTATCC	1 cut(s)	385
BisI	GCNGC	2 cut(s)	230, 573
BlsI	GCNGC	2 cut(s)	231, 574
BmgT120I	GGNCC	3 cut(s)	217, 218, 318
BmiI	GGNNCC	1 cut(s)	219
BpiI	GAAGAC	1 cut(s)	125
BpmI	CTGGAG	1 cut(s)	582
BsaI	GGTCTC	1 cut(s)	586
Bsc4I	CCNNNNNNNGG	1 cut(s)	611
Bse1I	ACTGG	1 cut(s)	473
BseGI	GGATG	2 cut(s)	469, 486
BseLI	CCNNNNNNNGG	1 cut(s)	611
BseNI	ACTGG	1 cut(s)	473
BseSI	GKGCMC	2 cut(s)	171, 221
BseXI	GCAGC	2 cut(s)	241, 559
Bsh1285I	CGRYCG	1 cut(s)	47
BshFI	GGCC	3 cut(s)	219, 320, 336
BsiEI	CGRYCG	1 cut(s)	47
BsiHKAI	GWGCWC	1 cut(s)	91
BslI	CCNNNNNNNGG	1 cut(s)	611
BsmAI	GTCTC	2 cut(s)	302, 586
BsmBI	CGTCTC	1 cut(s)	302
BsnI	GGCC	3 cut(s)	219, 320, 336
Bso31I	GGTCTC	1 cut(s)	586
Bsp120I	GGGCCC	1 cut(s)	217
Bsp1286I	GDGCHC	3 cut(s)	91, 171, 221
Bsp143I	GATC	1 cut(s)	484
BspACI	CCGC	1 cut(s)	43
BspANI	GGCC	3 cut(s)	219, 320, 336
BspLI	GGNNCC	1 cut(s)	219
BspPI	GGATC	1 cut(s)	492
BspTNI	GGTCTC	1 cut(s)	586
BsrI	ACTGG	1 cut(s)	473
BssMI	GATC	1 cut(s)	484
BssSI	CACGAG	1 cut(s)	249
Bst2BI	CACGAG	1 cut(s)	249
Bst4CI	ACNGT	3 cut(s)	86, 124, 402
Bst6I	CTCTTC	1 cut(s)	386
BstDEI	CTNAG	1 cut(s)	287
BstF5I	GGATG	2 cut(s)	469, 486
BstKTI	GATC	1 cut(s)	487
BstMAI	GTCTC	2 cut(s)	302, 586
BstMBI	GATC	1 cut(s)	484
BstMCI	CGRYCG	1 cut(s)	47
BstSFI	CTRYAG	1 cut(s)	398
BstSLI	GKGCMC	2 cut(s)	171, 221
BstV1I	GCAGC	2 cut(s)	241, 559
BstV2I	GAAGAC	1 cut(s)	125
BstX2I	RGATCY	1 cut(s)	484
BstYI	RGATCY	1 cut(s)	484
BsuI	GTATCC	1 cut(s)	385
BsuRI	GGCC	3 cut(s)	219, 320, 336
BtsCI	GGATG	2 cut(s)	469, 486
BtsI	GCAGTG	1 cut(s)	309
BtsIMutI	CAGTG	3 cut(s)	91, 182, 309
CaiI	CAGNNNCTG	1 cut(s)	205
Cfr13I	GGNCC	3 cut(s)	217, 218, 318
CviJI	RGCY	9 cut(s)	5, 50, 203, 219, 232, 320, 336, 397, 604
CviKI_1	RGCY	9 cut(s)	5, 50, 203, 219, 232, 320, 336, 397, 604
DdeI	CTNAG	1 cut(s)	287
DpnI	GATC	1 cut(s)	486
DpnII	GATC	1 cut(s)	484
Eam1104I	CTCTTC	1 cut(s)	386
EarI	CTCTTC	1 cut(s)	386
Eco24I	GRGCYC	1 cut(s)	221
Eco31I	GGTCTC	1 cut(s)	586
EcoO109I	RGGNCCY	2 cut(s)	217, 218
EcoT38I	GRGCYC	1 cut(s)	221
Esp3I	CGTCTC	1 cut(s)	302
FaiI	YATR	7 cut(s)	362, 420, 500, 533, 546, 607, 630
Fnu4HI	GCNGC	2 cut(s)	230, 573
FokI	GGATG	2 cut(s)	456, 493
FriOI	GRGCYC	1 cut(s)	221
Fsp4HI	GCNGC	2 cut(s)	230, 573
FspBI	CTAG	1 cut(s)	431
GluI	GCNGC	2 cut(s)	230, 573
GsuI	CTGGAG	1 cut(s)	582
HaeIII	GGCC	3 cut(s)	219, 320, 336
HinfI	GANTC	5 cut(s)	137, 144, 275, 454, 528
Hpy166II	GTNNAC	1 cut(s)	82
Hpy8I	GTNNAC	1 cut(s)	82
HpyAV	CCTTC	5 cut(s)	188, 309, 428, 502, 650
HpyCH4III	ACNGT	3 cut(s)	86, 124, 402
HpyCH4V	TGCA	2 cut(s)	95, 331
HpyF3I	CTNAG	1 cut(s)	287
Kzo9I	GATC	1 cut(s)	484
LmnI	GCTCC	1 cut(s)	94
Lsp1109I	GCAGC	2 cut(s)	241, 559
MaeI	CTAG	1 cut(s)	431
MaeIII	GTNAC	1 cut(s)	178
MalI	GATC	1 cut(s)	486
MboI	GATC	1 cut(s)	484
MboII	GAAGA	6 cut(s)	127, 130, 403, 479, 527, 660
MflI	RGATCY	1 cut(s)	484
MhlI	GDGCHC	3 cut(s)	91, 171, 221
MluCI	AATT	4 cut(s)	37, 188, 558, 639
MlyI	GAGTC	2 cut(s)	269, 463
MnlI	CCTC	4 cut(s)	265, 387, 432, 606
MslI	CAYNNNNRTG	1 cut(s)	503
NdeII	GATC	1 cut(s)	484
NlaIV	GGNNCC	1 cut(s)	219
NmuCI	GTSAC	1 cut(s)	178
PfeI	GAWTC	3 cut(s)	137, 144, 528
PkrI	GCNGC	2 cut(s)	231, 574
PleI	GAGTC	2 cut(s)	269, 462
PpsI	GAGTC	2 cut(s)	269, 462
PspN4I	GGNNCC	1 cut(s)	219
PspOMI	GGGCCC	1 cut(s)	217
PspPI	GGNCC	3 cut(s)	217, 218, 318
PstNI	CAGNNNCTG	1 cut(s)	205
PsuI	RGATCY	1 cut(s)	484
RseI	CAYNNNNRTG	1 cut(s)	503
SatI	GCNGC	2 cut(s)	230, 573
Sau3AI	GATC	1 cut(s)	484
Sau96I	GGNCC	3 cut(s)	217, 218, 318
SchI	GAGTC	2 cut(s)	269, 463
SduI	GDGCHC	3 cut(s)	91, 171, 221
SetI	ASST	5 cut(s)	199, 234, 513, 598, 616
SfcI	CTRYAG	1 cut(s)	398
SmiMI	CAYNNNNRTG	1 cut(s)	503
Sse9I	AATT	4 cut(s)	37, 188, 558, 639
SsiI	CCGC	1 cut(s)	43
SspMI	CTAG	1 cut(s)	431
TaaI	ACNGT	3 cut(s)	86, 124, 402
TaqI	TCGA	2 cut(s)	140, 236
TasI	AATT	4 cut(s)	37, 188, 558, 639
TfiI	GAWTC	3 cut(s)	137, 144, 528
TscAI	CASTG	3 cut(s)	91, 189, 309
TseFI	GTSAC	1 cut(s)	178
TseI	GCWGC	2 cut(s)	229, 572
Tsp45I	GTSAC	1 cut(s)	178
TspDTI	ATGAA	1 cut(s)	651
TspGWI	ACGGA	1 cut(s)	368
TspRI	CASTG	3 cut(s)	91, 189, 309
XspI	CTAG	1 cut(s)	431

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.