RLG00000021165

Belongs to the universal ribosomal protein uL6 family

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Reverse (-)
72496606 .. 72498491
1886 bp
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UTR
Exon/CDS
Intron
RLM00000021165

Sequence Viewer

Length: 678 bp
ATGGCTTCCCCAATCACTTCGTCTTTCCAAACCAGCAATTTGCGGTCGGCTTTTCTGGGCGAAAGAAAGGGTTTCACTGTTTACAGTGCTCCTGCAAGCAATGTTGGGTTTTTGAAGAAGACTGTGCAATGTAAGGAATCGAGAATTGGGAAGCAACCGATTGAAGTGCCGAACAATGTAACACTGAAATTGGAAGGTCAGGCTCTGGAAGTAAAGGGCCCTTTGGGGCAGCTCTCGATGACTTACCCACGAGAAGTAGTGGTGGAGAAGGACTCTGGATTTCTAAGGGTCAAGAAGGCAGTGGAGACAAGAAGGGCTAATCAAATGCACGGGCTTTTCAGGACACTTACGGACAATATGGTAGTGGGAGTATCCAAAGGATTCGAGAAGAGGCTACAGTTGATTGGTGTTGGTTATAGAGCAACACTAGAAGGGAGGATTCTGGTATTGAGTCTTGGGTTCTCCCATCCAGTTAGGATGGATATTCCTGATGGCATACAAGTGAAGGTGGAAGAAAACACCAGAATCATAGTTAGTGGTTATGACAAGAGTGAAATTGGTCAGTTTGCTGCTTCCATCCGGAAATGGAGACCTCCAGAGCCATACAAAGGTAAGGGAGTGAAATATGCTGATGAAATTGTAAGAAGAAAGGAGGGAAAAGCAGGAAAGAAGAAGTAA

Protein Analysis

226

Amino Acids

25.0

Weight (kDa)

10.08

Isoelectric Point (pI)

34.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L6 PF00347 56 - 127 6.1e-13 Ribosomal protein L6
Ribosomal_L6 PF00347 135 - 209 7.3e-24 Ribosomal protein L6
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0014070)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 579
AciI CCGC 1 cut(s) 43
AfiI CCNNNNNNNGG 1 cut(s) 608
AgsI TTSAA 2 cut(s) 115, 164
AjuI GAANNNNNNNTTGG 2 cut(s) 129, 161
AluBI AGCT 1 cut(s) 232
AluI AGCT 1 cut(s) 232
Alw21I GWGCWC 1 cut(s) 91
Alw26I GTCTC 2 cut(s) 299, 583
AlwNI CAGNNNCTG 1 cut(s) 205
Aor13HI TCCGGA 1 cut(s) 579
AoxI GGCC 1 cut(s) 217
ApaI GGGCCC 1 cut(s) 221
ApeKI GCWGC 2 cut(s) 229, 569
AspS9I GGNCC 2 cut(s) 217, 218
BaeGI GKGCMC 1 cut(s) 221
BanII GRGCYC 1 cut(s) 221
BauI CACGAG 1 cut(s) 249
BbsI GAAGAC 1 cut(s) 125
Bbv12I GWGCWC 1 cut(s) 91
BbvI GCAGC 2 cut(s) 241, 556
BccI CCATC 4 cut(s) 472, 474, 485, 584
BcgI CGANNNNNNTGC 2 cut(s) 148, 182
BciVI GTATCC 1 cut(s) 382
BcoDI GTCTC 2 cut(s) 299, 583
BfaI CTAG 1 cut(s) 428
BfmI CTRYAG 1 cut(s) 395
BfuI GTATCC 1 cut(s) 382
BisI GCNGC 2 cut(s) 230, 570
BlsI GCNGC 2 cut(s) 231, 571
BmgT120I GGNCC 2 cut(s) 217, 218
BmiI GGNNCC 1 cut(s) 219
BpiI GAAGAC 1 cut(s) 125
BplI GAGNNNNNCTC 2 cut(s) 257, 289
BpmI CTGGAG 1 cut(s) 579
BsaI GGTCTC 1 cut(s) 583
BsaWI WCCGGW 1 cut(s) 579
Bsc4I CCNNNNNNNGG 1 cut(s) 608
Bse1I ACTGG 1 cut(s) 470
Bse3DI GCAATG 2 cut(s) 106, 134
BseAI TCCGGA 1 cut(s) 579
BseGI GGATG 3 cut(s) 466, 483, 576
BseLI CCNNNNNNNGG 1 cut(s) 608
BseMI GCAATG 2 cut(s) 106, 134
BseNI ACTGG 1 cut(s) 470
BseSI GKGCMC 1 cut(s) 221
BseXI GCAGC 2 cut(s) 241, 556
Bsh1285I CGRYCG 1 cut(s) 47
BshFI GGCC 1 cut(s) 219
BsiEI CGRYCG 1 cut(s) 47
BsiHKAI GWGCWC 1 cut(s) 91
BsiSI CCGG 1 cut(s) 580
BslI CCNNNNNNNGG 1 cut(s) 608
BsmAI GTCTC 2 cut(s) 299, 583
BsnI GGCC 1 cut(s) 219
Bso31I GGTCTC 1 cut(s) 583
Bsp120I GGGCCC 1 cut(s) 217
Bsp1286I GDGCHC 2 cut(s) 91, 221
Bsp13I TCCGGA 1 cut(s) 579
BspACI CCGC 1 cut(s) 43
BspANI GGCC 1 cut(s) 219
BspEI TCCGGA 1 cut(s) 579
BspLI GGNNCC 1 cut(s) 219
BspTNI GGTCTC 1 cut(s) 583
BsrDI GCAATG 2 cut(s) 106, 134
BsrI ACTGG 1 cut(s) 470
BssSI CACGAG 1 cut(s) 249
Bst2BI CACGAG 1 cut(s) 249
Bst4CI ACNGT 4 cut(s) 79, 86, 124, 399
Bst6I CTCTTC 1 cut(s) 383
BstC8I GCNNGC 1 cut(s) 97
BstDEI CTNAG 1 cut(s) 284
BstF5I GGATG 3 cut(s) 466, 483, 576
BstMAI GTCTC 2 cut(s) 299, 583
BstMCI CGRYCG 1 cut(s) 47
BstSFI CTRYAG 1 cut(s) 395
BstSLI GKGCMC 1 cut(s) 221
BstV1I GCAGC 2 cut(s) 241, 556
BstV2I GAAGAC 1 cut(s) 125
BsuI GTATCC 1 cut(s) 382
BsuRI GGCC 1 cut(s) 219
BtsCI GGATG 3 cut(s) 466, 483, 576
BtsI GCAGTG 1 cut(s) 306
BtsIMutI CAGTG 4 cut(s) 75, 91, 182, 306
Cac8I GCNNGC 1 cut(s) 97
CaiI CAGNNNCTG 1 cut(s) 205
Cfr13I GGNCC 2 cut(s) 217, 218
CviJI RGCY 9 cut(s) 5, 50, 203, 219, 232, 317, 334, 394, 601
CviKI_1 RGCY 9 cut(s) 5, 50, 203, 219, 232, 317, 334, 394, 601
DdeI CTNAG 1 cut(s) 284
Eam1104I CTCTTC 1 cut(s) 383
EarI CTCTTC 1 cut(s) 383
Eco24I GRGCYC 1 cut(s) 221
Eco31I GGTCTC 1 cut(s) 583
EcoO109I RGGNCCY 2 cut(s) 217, 218
EcoT38I GRGCYC 1 cut(s) 221
FaiI YATR 7 cut(s) 359, 417, 497, 530, 543, 604, 627
Fnu4HI GCNGC 2 cut(s) 230, 570
FokI GGATG 3 cut(s) 453, 490, 563
FriOI GRGCYC 1 cut(s) 221
Fsp4HI GCNGC 2 cut(s) 230, 570
FspBI CTAG 1 cut(s) 428
GluI GCNGC 2 cut(s) 230, 570
GsuI CTGGAG 1 cut(s) 579
HaeIII GGCC 1 cut(s) 219
HapII CCGG 1 cut(s) 580
HinfI GANTC 6 cut(s) 137, 272, 381, 439, 451, 525
HpaII CCGG 1 cut(s) 580
Hpy166II GTNNAC 1 cut(s) 82
Hpy8I GTNNAC 1 cut(s) 82
HpyAV CCTTC 6 cut(s) 188, 262, 289, 306, 425, 499
HpyCH4III ACNGT 4 cut(s) 79, 86, 124, 399
HpyCH4V TGCA 3 cut(s) 95, 127, 328
HpyF3I CTNAG 1 cut(s) 284
Kpn2I TCCGGA 1 cut(s) 579
LmnI GCTCC 1 cut(s) 94
Lsp1109I GCAGC 2 cut(s) 241, 556
MaeI CTAG 1 cut(s) 428
MaeIII GTNAC 1 cut(s) 178
MboII GAAGA 5 cut(s) 127, 130, 400, 524, 657
MhlI GDGCHC 2 cut(s) 91, 221
MluCI AATT 5 cut(s) 37, 144, 188, 555, 636
MlyI GAGTC 2 cut(s) 266, 460
MnlI CCTC 4 cut(s) 384, 429, 603, 646
MroI TCCGGA 1 cut(s) 579
MslI CAYNNNNRTG 1 cut(s) 500
MspI CCGG 1 cut(s) 580
NlaIV GGNNCC 1 cut(s) 219
PfeI GAWTC 4 cut(s) 137, 381, 439, 525
PkrI GCNGC 2 cut(s) 231, 571
PleI GAGTC 2 cut(s) 266, 459
PpsI GAGTC 2 cut(s) 266, 459
PspN4I GGNNCC 1 cut(s) 219
PspOMI GGGCCC 1 cut(s) 217
PspPI GGNCC 2 cut(s) 217, 218
PstNI CAGNNNCTG 1 cut(s) 205
RseI CAYNNNNRTG 1 cut(s) 500
SatI GCNGC 2 cut(s) 230, 570
Sau96I GGNCC 2 cut(s) 217, 218
SchI GAGTC 2 cut(s) 266, 460
SduI GDGCHC 2 cut(s) 91, 221
SetI ASST 5 cut(s) 199, 234, 510, 595, 613
SfcI CTRYAG 1 cut(s) 395
SmiMI CAYNNNNRTG 1 cut(s) 500
Sse9I AATT 5 cut(s) 37, 144, 188, 555, 636
SsiI CCGC 1 cut(s) 43
SspMI CTAG 1 cut(s) 428
TaaI ACNGT 4 cut(s) 79, 86, 124, 399
TaqI TCGA 3 cut(s) 140, 236, 384
TasI AATT 5 cut(s) 37, 144, 188, 555, 636
TfiI GAWTC 4 cut(s) 137, 381, 439, 525
TscAI CASTG 4 cut(s) 82, 91, 189, 306
TseI GCWGC 2 cut(s) 229, 569
TspDTI ATGAA 1 cut(s) 648
TspGWI ACGGA 1 cut(s) 365
TspRI CASTG 4 cut(s) 82, 91, 189, 306
XspI CTAG 1 cut(s) 428
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.