Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0014070

Physical Location & Seq

Genomic Coordinates Reverse (-)

33525010 .. 33527085

Gene Structure 2076 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g43280.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGGCTTCCCCTATCACTTCCTCTTTCCAAACCAGTAATTTGCGGTCGGCCTTTTTGGGTGAAAGAAAAGGTTTCACTGTTTACAGTGCTCCTGCAACTAATGTGGGATTTTTGAAGAAGGCTGTGGAATGTAAGGAATCGAGAATTGGGAAGCAGCCAATTGAAGTGCCGGCCAATGTGACACTGAAATTGGAAGGCCAGTCTCTGGAAGTAAAGGGTCCTTTGGGGCAGCTCTCGATGATTTTACCACGAGAAGTTGTGGTGGAGAAGCAGGAATCTGGGGTTCTGAAGGTCAGGAAAGCTATGGAGACTAGACGGGCCAATCAAATGCATGGCCTTTTCAGGACACTTACAGACAATATGGTGGTGGGAGTATCCAAAGGATTTGAGAAGAGGCTACAATTGATTGGTGTTGGTTATCGAGCAACATTGGAAGGAAGGATCTTGGTATTGAGTCTTGGGTTCTCCCATCCAGTTAGGATGGATATTCCTGATGGCATACAAGTGAAGGTGGAAGAAAACACCAGAATCATAGTTAGCGGATATGACAAGAGTGAAATTGGCCAGTTTGCTGCTTCCATCAGGAAATGGAGACCACCAGAGCCATACAAAGGTAAGGGTGTGAAATATGCTGATGAAATTGTAAGAAGAAAGGAGGGAAAAGCAGGAAAGAAGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0007275 GO:0008150 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009719 GO:0009725 GO:0009735 GO:0009790 GO:0009791 GO:0009793 GO:0009941 GO:0010033 GO:0010154 GO:0016020 GO:0022414 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L6

Protein Analysis

227

Amino Acids

25.04

Weight (kDa)

10.06

Isoelectric Point (pI)

40.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L6	PF00347	56 - 128	7.2e-13	Ribosomal protein L6
Ribosomal_L6	PF00347	136 - 210	7.4e-24	Ribosomal protein L6

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0014070)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05190
fragaria_vesca	FvH4_6g43280
malus_domestica	MD09G1107800.v1.1 MD09G1108400.v1.1 MD17G1096300.v1.1
prunus_persica	Prupe.1G100300_v2.0.a1
pyrus_communis	pycom09g03090 pycom17g09240
rosa_chinensis	RchiOBHm_Chr2g0159551
rosa_laevigata	RLG00000021165
rosa_multiflora	Rmu_sc0004260.1_g000004 Rmu_sc0012414.1_g000013
rosa_roxburghii	Rroxscaffold_2G00090410
rosa_rugosa	Rorug02G0476800
rosa_samantha	Rh2BG556800 Rh2CG527000
rosa_wichuraiana	Rw2G044970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	205
AciI	CCGC	2 cut(s)	43, 540
AclWI	GGATC	1 cut(s)	449
AcoI	YGGCCR	2 cut(s)	171, 562
AcuI	CTGAAG	1 cut(s)	308
AfiI	CCNNNNNNNGG	2 cut(s)	205, 611
AgsI	TTSAA	2 cut(s)	115, 164
AjuI	GAANNNNNNNTTGG	2 cut(s)	129, 161
AluBI	AGCT	2 cut(s)	232, 302
AluI	AGCT	2 cut(s)	232, 302
Alw21I	GWGCWC	1 cut(s)	91
Alw26I	GTCTC	3 cut(s)	207, 302, 586
AlwI	GGATC	1 cut(s)	449
AlwNI	CAGNNNCTG	1 cut(s)	205
AoxI	GGCC	6 cut(s)	48, 171, 196, 318, 334, 562
ApeKI	GCWGC	3 cut(s)	154, 229, 572
AspS9I	GGNCC	2 cut(s)	218, 318
AsuHPI	GGTGA	1 cut(s)	71
AvaII	GGWCC	1 cut(s)	218
BalI	TGGCCA	1 cut(s)	564
BauI	CACGAG	1 cut(s)	249
Bbv12I	GWGCWC	1 cut(s)	91
BbvI	GCAGC	3 cut(s)	166, 241, 559
BccI	CCATC	4 cut(s)	475, 477, 488, 587
BciVI	GTATCC	1 cut(s)	385
BcoDI	GTCTC	3 cut(s)	207, 302, 586
BfaI	CTAG	1 cut(s)	312
BfuI	GTATCC	1 cut(s)	385
BisI	GCNGC	3 cut(s)	155, 230, 573
BlsI	GCNGC	3 cut(s)	156, 231, 574
Bme18I	GGWCC	1 cut(s)	218
BmgT120I	GGNCC	2 cut(s)	218, 318
BmiI	GGNNCC	1 cut(s)	219
BsaI	GGTCTC	1 cut(s)	586
Bsc4I	CCNNNNNNNGG	2 cut(s)	205, 611
Bse118I	RCCGGY	1 cut(s)	169
Bse1I	ACTGG	4 cut(s)	33, 199, 473, 565
BseGI	GGATG	2 cut(s)	469, 486
BseLI	CCNNNNNNNGG	2 cut(s)	205, 611
BseNI	ACTGG	4 cut(s)	33, 199, 473, 565
BseXI	GCAGC	3 cut(s)	166, 241, 559
Bsh1285I	CGRYCG	1 cut(s)	47
BshFI	GGCC	6 cut(s)	50, 173, 198, 320, 336, 564
BsiEI	CGRYCG	1 cut(s)	47
BsiHKAI	GWGCWC	1 cut(s)	91
BsiSI	CCGG	1 cut(s)	170
BslI	CCNNNNNNNGG	2 cut(s)	205, 611
BsmAI	GTCTC	3 cut(s)	207, 302, 586
BsnI	GGCC	6 cut(s)	50, 173, 198, 320, 336, 564
Bso31I	GGTCTC	1 cut(s)	586
Bsp1286I	GDGCHC	1 cut(s)	91
Bsp143I	GATC	1 cut(s)	441
BspACI	CCGC	2 cut(s)	43, 540
BspANI	GGCC	6 cut(s)	50, 173, 198, 320, 336, 564
BspLI	GGNNCC	1 cut(s)	219
BspPI	GGATC	1 cut(s)	449
BspTNI	GGTCTC	1 cut(s)	586
BsrFI	RCCGGY	1 cut(s)	169
BsrI	ACTGG	4 cut(s)	33, 199, 473, 565
BssAI	RCCGGY	1 cut(s)	169
BssMI	GATC	1 cut(s)	441
BssSI	CACGAG	1 cut(s)	249
Bst2BI	CACGAG	1 cut(s)	249
Bst4CI	ACNGT	2 cut(s)	79, 86
Bst6I	CTCTTC	1 cut(s)	386
BstC8I	GCNNGC	1 cut(s)	171
BstF5I	GGATG	2 cut(s)	469, 486
BstKTI	GATC	1 cut(s)	444
BstMAI	GTCTC	3 cut(s)	207, 302, 586
BstMBI	GATC	1 cut(s)	441
BstMCI	CGRYCG	1 cut(s)	47
BstV1I	GCAGC	3 cut(s)	166, 241, 559
BstX2I	RGATCY	1 cut(s)	441
BstYI	RGATCY	1 cut(s)	441
BsuI	GTATCC	1 cut(s)	385
BsuRI	GGCC	6 cut(s)	50, 173, 198, 320, 336, 564
BtsCI	GGATG	2 cut(s)	469, 486
BtsIMutI	CAGTG	3 cut(s)	75, 91, 182
Cac8I	GCNNGC	1 cut(s)	171
CaiI	CAGNNNCTG	1 cut(s)	205
Cfr10I	RCCGGY	1 cut(s)	169
Cfr13I	GGNCC	2 cut(s)	218, 318
CspCI	CAANNNNNGTGG	2 cut(s)	84, 119
CviAII	CATG	1 cut(s)	332
DpnI	GATC	1 cut(s)	443
DpnII	GATC	1 cut(s)	441
EaeI	YGGCCR	2 cut(s)	171, 562
Eam1104I	CTCTTC	1 cut(s)	386
EarI	CTCTTC	1 cut(s)	386
Eco31I	GGTCTC	1 cut(s)	586
Eco47I	GGWCC	1 cut(s)	218
Eco57I	CTGAAG	1 cut(s)	308
EcoO109I	RGGNCCY	1 cut(s)	218
EcoT22I	ATGCAT	1 cut(s)	333
FaeI	CATG	1 cut(s)	335
FaiI	YATR	8 cut(s)	305, 333, 362, 500, 533, 546, 607, 630
FatI	CATG	1 cut(s)	331
Fnu4HI	GCNGC	3 cut(s)	155, 230, 573
FokI	GGATG	2 cut(s)	456, 493
Fsp4HI	GCNGC	3 cut(s)	155, 230, 573
FspBI	CTAG	1 cut(s)	312
GluI	GCNGC	3 cut(s)	155, 230, 573
HaeIII	GGCC	6 cut(s)	50, 173, 198, 320, 336, 564
HapII	CCGG	1 cut(s)	170
Hin1II	CATG	1 cut(s)	335
HinfI	GANTC	4 cut(s)	137, 275, 454, 528
HpaII	CCGG	1 cut(s)	170
HphI	GGTGA	1 cut(s)	71
Hpy166II	GTNNAC	1 cut(s)	82
Hpy188I	TCNGA	1 cut(s)	288
Hpy188III	TCNNGA	7 cut(s)	141, 206, 235, 295, 343, 491, 583
Hpy8I	GTNNAC	1 cut(s)	82
HpyAV	CCTTC	6 cut(s)	112, 188, 283, 428, 432, 502
HpyCH4III	ACNGT	2 cut(s)	79, 86
HpyCH4V	TGCA	2 cut(s)	95, 331
Hsp92II	CATG	1 cut(s)	335
KroI	GCCGGC	1 cut(s)	169
KroNI	GCCGGC	1 cut(s)	171
Kzo9I	GATC	1 cut(s)	441
LmnI	GCTCC	1 cut(s)	94
Lsp1109I	GCAGC	3 cut(s)	166, 241, 559
MaeI	CTAG	1 cut(s)	312
MaeIII	GTNAC	1 cut(s)	178
MalI	GATC	1 cut(s)	443
MboI	GATC	1 cut(s)	441
MboII	GAAGA	4 cut(s)	127, 403, 527, 660
MfeI	CAATTG	2 cut(s)	159, 401
MflI	RGATCY	1 cut(s)	441
MhlI	GDGCHC	1 cut(s)	91
MlsI	TGGCCA	1 cut(s)	564
MluCI	AATT	7 cut(s)	37, 144, 159, 188, 401, 558, 639
MluNI	TGGCCA	1 cut(s)	564
MlyI	GAGTC	1 cut(s)	463
MnlI	CCTC	3 cut(s)	31, 387, 649
Mox20I	TGGCCA	1 cut(s)	564
Mph1103I	ATGCAT	1 cut(s)	333
MroNI	GCCGGC	1 cut(s)	169
MscI	TGGCCA	1 cut(s)	564
MslI	CAYNNNNRTG	1 cut(s)	503
Msp20I	TGGCCA	1 cut(s)	564
MspI	CCGG	1 cut(s)	170
MunI	CAATTG	2 cut(s)	159, 401
NaeI	GCCGGC	1 cut(s)	171
NdeII	GATC	1 cut(s)	441
NgoMIV	GCCGGC	1 cut(s)	169
NlaIII	CATG	1 cut(s)	335
NlaIV	GGNNCC	1 cut(s)	219
NmuCI	GTSAC	1 cut(s)	178
NsiI	ATGCAT	1 cut(s)	333
PdiI	GCCGGC	1 cut(s)	171
PfeI	GAWTC	3 cut(s)	137, 275, 528
PflMI	CCANNNNNTGG	1 cut(s)	205
PkrI	GCNGC	3 cut(s)	156, 231, 574
PleI	GAGTC	1 cut(s)	462
PpsI	GAGTC	1 cut(s)	462
PpuMI	RGGWCCY	1 cut(s)	218
Psp5II	RGGWCCY	1 cut(s)	218
PspN4I	GGNNCC	1 cut(s)	219
PspPI	GGNCC	2 cut(s)	218, 318
PspPPI	RGGWCCY	1 cut(s)	218
PstNI	CAGNNNCTG	1 cut(s)	205
PsuI	RGATCY	1 cut(s)	441
RseI	CAYNNNNRTG	1 cut(s)	503
SatI	GCNGC	3 cut(s)	155, 230, 573
Sau3AI	GATC	1 cut(s)	441
Sau96I	GGNCC	2 cut(s)	218, 318
SchI	GAGTC	1 cut(s)	463
SduI	GDGCHC	1 cut(s)	91
SetI	ASST	6 cut(s)	73, 234, 294, 304, 513, 616
SinI	GGWCC	1 cut(s)	218
SmiMI	CAYNNNNRTG	1 cut(s)	503
Sse9I	AATT	7 cut(s)	37, 144, 159, 188, 401, 558, 639
SsiI	CCGC	2 cut(s)	43, 540
SspMI	CTAG	1 cut(s)	312
TaaI	ACNGT	2 cut(s)	79, 86
TaqI	TCGA	3 cut(s)	140, 236, 421
TasI	AATT	7 cut(s)	37, 144, 159, 188, 401, 558, 639
TfiI	GAWTC	3 cut(s)	137, 275, 528
TscAI	CASTG	3 cut(s)	82, 91, 189
TseFI	GTSAC	1 cut(s)	178
TseI	GCWGC	3 cut(s)	154, 229, 572
Tsp45I	GTSAC	1 cut(s)	178
TspDTI	ATGAA	1 cut(s)	651
TspRI	CASTG	3 cut(s)	82, 91, 189
Van91I	CCANNNNNTGG	1 cut(s)	205
VpaK11BI	GGWCC	1 cut(s)	218
XspI	CTAG	1 cut(s)	312
Zsp2I	ATGCAT	1 cut(s)	333

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.