RchiOBHm_Chr2g0159551

Belongs to the universal ribosomal protein uL6 family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
Physical Location & Seq
Reverse (-)
75648777 .. 75650972
2196 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ52812

Sequence Viewer

Length: 681 bp
ATGGCTTCCCCAATCACTTCGTCTTTCCAAACCAGCAATTTGCGGTCGGCTTTTCTGGGCGAAAGAAAGGGTTTCATTGTTTACAGTGCTCCTGCAAGTAATGTTGGGTTTTTGAAGAAGACCGTGGAATGTAAGGAATCGAGAATCGGGAAGCAACCGATTGAAGTGCCGAACAATGTGACACTGAAATTGGAAGGTCAGGCTCTGGAAGTAAAGGGCCCTTTGGGGCAGCTCTCGATGACTTACCCACGAGAAGTAGTGGTGGAAAAGGAGGACTCTGGATTTCTAAGGGTCAAGAAAGCAGTGGAGACGAGAAGGGCCAATCAAATGCACGGCCTTTTCAGGACACTTACGGACAATATGGTGGTGGGAGTATCCAAAGGATTTGAGAAGAGGCTACAGTTGATTGGCGTTGGTTATAGAGCGACACTAGAAGGGAGGATTTTGGTATTGAGTCTTGGGTTCTCCCATCCAGTTAGGATGAATCTTCCTGATGGCATACAAGTGAAGGTGGAAGAAAACACCAGAATCATAGTTAGTGGATATGACAAGAGTGAAATTGGTCAGTTTGCTGCTTCCATCAGGAAATGGAGACCCCCAGAGCCATACAAAGGTAAGGGAGTGAAATATGCTGATGAAATTGTAAGAAGAAAGGAAGGAAAAGCAGGAAAGAAGAAGTAA

Protein Analysis

226

Amino Acids

25.14

Weight (kDa)

10.02

Isoelectric Point (pI)

37.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L6 PF00347 56 - 128 7.9e-13 Ribosomal protein L6
Ribosomal_L6 PF00347 136 - 210 1.9e-23 Ribosomal protein L6
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0014070)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 43
AfiI CCNNNNNNNGG 1 cut(s) 611
AgsI TTSAA 2 cut(s) 115, 164
AluBI AGCT 1 cut(s) 232
AluI AGCT 1 cut(s) 232
Alw21I GWGCWC 1 cut(s) 91
Alw26I GTCTC 2 cut(s) 302, 586
AlwNI CAGNNNCTG 1 cut(s) 205
AoxI GGCC 3 cut(s) 217, 318, 334
ApaI GGGCCC 1 cut(s) 221
ApeKI GCWGC 2 cut(s) 229, 572
AspS9I GGNCC 3 cut(s) 217, 218, 318
BaeGI GKGCMC 1 cut(s) 221
BanII GRGCYC 1 cut(s) 221
BauI CACGAG 1 cut(s) 249
BbsI GAAGAC 1 cut(s) 125
Bbv12I GWGCWC 1 cut(s) 91
BbvI GCAGC 2 cut(s) 241, 559
BccI CCATC 3 cut(s) 477, 488, 587
BceAI ACGGC 1 cut(s) 349
BcgI CGANNNNNNTGC 2 cut(s) 148, 182
BciVI GTATCC 1 cut(s) 385
BcoDI GTCTC 2 cut(s) 302, 586
BfaI CTAG 1 cut(s) 431
BfmI CTRYAG 1 cut(s) 398
BfuI GTATCC 1 cut(s) 385
BisI GCNGC 2 cut(s) 230, 573
BlsI GCNGC 2 cut(s) 231, 574
BmgT120I GGNCC 3 cut(s) 217, 218, 318
BmiI GGNNCC 1 cut(s) 219
BpiI GAAGAC 1 cut(s) 125
BsaI GGTCTC 1 cut(s) 586
BsaJI CCNNGG 1 cut(s) 123
Bsc4I CCNNNNNNNGG 1 cut(s) 611
Bse1I ACTGG 1 cut(s) 473
BseDI CCNNGG 1 cut(s) 123
BseGI GGATG 2 cut(s) 469, 486
BseLI CCNNNNNNNGG 1 cut(s) 611
BseNI ACTGG 1 cut(s) 473
BseSI GKGCMC 1 cut(s) 221
BseXI GCAGC 2 cut(s) 241, 559
Bsh1285I CGRYCG 1 cut(s) 47
BshFI GGCC 3 cut(s) 219, 320, 336
BsiEI CGRYCG 1 cut(s) 47
BsiHKAI GWGCWC 1 cut(s) 91
BslI CCNNNNNNNGG 1 cut(s) 611
BsmAI GTCTC 2 cut(s) 302, 586
BsmBI CGTCTC 1 cut(s) 302
BsnI GGCC 3 cut(s) 219, 320, 336
Bso31I GGTCTC 1 cut(s) 586
Bsp120I GGGCCC 1 cut(s) 217
Bsp1286I GDGCHC 2 cut(s) 91, 221
BspACI CCGC 1 cut(s) 43
BspANI GGCC 3 cut(s) 219, 320, 336
BspLI GGNNCC 1 cut(s) 219
BspTNI GGTCTC 1 cut(s) 586
BsrI ACTGG 1 cut(s) 473
BssECI CCNNGG 1 cut(s) 123
BssSI CACGAG 1 cut(s) 249
Bst2BI CACGAG 1 cut(s) 249
Bst4CI ACNGT 3 cut(s) 86, 124, 402
Bst6I CTCTTC 1 cut(s) 386
BstDEI CTNAG 1 cut(s) 287
BstDSI CCRYGG 1 cut(s) 123
BstF5I GGATG 2 cut(s) 469, 486
BstMAI GTCTC 2 cut(s) 302, 586
BstMCI CGRYCG 1 cut(s) 47
BstSFI CTRYAG 1 cut(s) 398
BstSLI GKGCMC 1 cut(s) 221
BstV1I GCAGC 2 cut(s) 241, 559
BstV2I GAAGAC 1 cut(s) 125
BsuI GTATCC 1 cut(s) 385
BsuRI GGCC 3 cut(s) 219, 320, 336
BtgI CCRYGG 1 cut(s) 123
BtsCI GGATG 2 cut(s) 469, 486
BtsI GCAGTG 1 cut(s) 309
BtsIMutI CAGTG 3 cut(s) 91, 182, 309
CaiI CAGNNNCTG 1 cut(s) 205
Cfr13I GGNCC 3 cut(s) 217, 218, 318
CviJI RGCY 9 cut(s) 5, 50, 203, 219, 232, 320, 336, 397, 604
CviKI_1 RGCY 9 cut(s) 5, 50, 203, 219, 232, 320, 336, 397, 604
DdeI CTNAG 1 cut(s) 287
Eam1104I CTCTTC 1 cut(s) 386
EarI CTCTTC 1 cut(s) 386
Eco24I GRGCYC 1 cut(s) 221
Eco31I GGTCTC 1 cut(s) 586
EcoO109I RGGNCCY 2 cut(s) 217, 218
EcoT38I GRGCYC 1 cut(s) 221
Esp3I CGTCTC 1 cut(s) 302
FaiI YATR 7 cut(s) 362, 420, 500, 533, 546, 607, 630
Fnu4HI GCNGC 2 cut(s) 230, 573
FokI GGATG 2 cut(s) 456, 493
FriOI GRGCYC 1 cut(s) 221
Fsp4HI GCNGC 2 cut(s) 230, 573
FspBI CTAG 1 cut(s) 431
GluI GCNGC 2 cut(s) 230, 573
HaeIII GGCC 3 cut(s) 219, 320, 336
HinfI GANTC 6 cut(s) 137, 144, 275, 454, 484, 528
Hpy166II GTNNAC 1 cut(s) 82
Hpy188III TCNNGA 9 cut(s) 141, 148, 206, 235, 279, 295, 343, 491, 583
Hpy8I GTNNAC 1 cut(s) 82
HpyAV CCTTC 5 cut(s) 188, 309, 428, 502, 650
HpyCH4III ACNGT 3 cut(s) 86, 124, 402
HpyCH4V TGCA 2 cut(s) 95, 331
HpyF3I CTNAG 1 cut(s) 287
LmnI GCTCC 1 cut(s) 94
Lsp1109I GCAGC 2 cut(s) 241, 559
MaeI CTAG 1 cut(s) 431
MaeIII GTNAC 1 cut(s) 178
MboII GAAGA 6 cut(s) 127, 130, 403, 479, 527, 660
MhlI GDGCHC 2 cut(s) 91, 221
MluCI AATT 4 cut(s) 37, 188, 558, 639
MlyI GAGTC 2 cut(s) 269, 463
MnlI CCTC 3 cut(s) 265, 387, 432
MslI CAYNNNNRTG 1 cut(s) 503
NlaIV GGNNCC 1 cut(s) 219
NmuCI GTSAC 1 cut(s) 178
PfeI GAWTC 4 cut(s) 137, 144, 484, 528
PkrI GCNGC 2 cut(s) 231, 574
PleI GAGTC 2 cut(s) 269, 462
PpsI GAGTC 2 cut(s) 269, 462
PspN4I GGNNCC 1 cut(s) 219
PspOMI GGGCCC 1 cut(s) 217
PspPI GGNCC 3 cut(s) 217, 218, 318
PstNI CAGNNNCTG 1 cut(s) 205
RseI CAYNNNNRTG 1 cut(s) 503
SatI GCNGC 2 cut(s) 230, 573
Sau96I GGNCC 3 cut(s) 217, 218, 318
SchI GAGTC 2 cut(s) 269, 463
SduI GDGCHC 2 cut(s) 91, 221
SetI ASST 4 cut(s) 199, 234, 513, 616
SfcI CTRYAG 1 cut(s) 398
SmiMI CAYNNNNRTG 1 cut(s) 503
Sse9I AATT 4 cut(s) 37, 188, 558, 639
SsiI CCGC 1 cut(s) 43
SspMI CTAG 1 cut(s) 431
TaaI ACNGT 3 cut(s) 86, 124, 402
TaqI TCGA 2 cut(s) 140, 236
TasI AATT 4 cut(s) 37, 188, 558, 639
TfiI GAWTC 4 cut(s) 137, 144, 484, 528
TscAI CASTG 3 cut(s) 91, 189, 309
TseFI GTSAC 1 cut(s) 178
TseI GCWGC 2 cut(s) 229, 572
Tsp45I GTSAC 1 cut(s) 178
TspDTI ATGAA 3 cut(s) 64, 497, 651
TspGWI ACGGA 1 cut(s) 368
TspRI CASTG 3 cut(s) 91, 189, 309
XspI CTAG 1 cut(s) 431
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.