Rorug02G0476800

Belongs to the universal ribosomal protein uL6 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0014070
Physical Location & Seq
Forward (+)
60809590 .. 60811671
2082 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0476800.1

Sequence Viewer

Length: 1212 bp
ATGGATGATCAGCCTTTTCTTTCCAAGATTGCAGCAGAGGCAGCTGGTGAAGAAGGGACTAGCAGAGCAGCACCAAGAAAATCATCAAGAGACTTATTTCACTCAAGTTTCCTTGATCTTGGCCCTTCACGCCGTCTCTCAAGTACTCAGCTAATCACAAGTGCTGGTGATGTTGTTGTTCCCATAACACCAAATTCTTCTTCCTATGCAAATCTCATTGCCAACTTGAACAAGAGCAGGAAAAGAAGGCTCAAACGTCGATCACACTCAGCTCCATCAGTGTTCACCGACTTTAAGGAGACGATTCCAGATTCTTTGGATCCCAGACCTGCCCCTAAATCAACCCCTAACATTGTTAGGCAAGCCTTCATCGGTGTCATTGTGTATATCATAATTGGCGTTGTGGTCTACTTGACCAGCGGTGGTATCTCAGGGGATGTTGTCACATACAGGCCAGTGGACGCCATGTACTTTATTGTTGTCACGCTCTGCACCATTGGATATGGTGACATTGTCCCGGACACAACATTTACCAAACTCTTCACTTGTTTCTTCATCTTGGTTGGTTTTGGTTTCATTGATATTCTGCTACATGGGTTGGTGACCTACATCTGTGACAGGCAAGAATCGGTTTTGTTGAGCACGGTGGATGAGAATAAGTTCAATACAATGGTTCAGGCGTATTTCATTGATAAAGAGAAGGGGAGGATGAGAATAAGGATCAAGGTATGCTTGGCCTCGACAGTAGTTTTTTGTTGTATAGCTATAGGCACAATAGTAGCTCATTATGCAGAGGGCTACAGCTGGGTTGATAGTTTTTACCTATCTGTTACATCAGTGACAACAGTAGGTTATGGGGATTATGCTTTCAATACCATTGGAGGAAGATGTTTTGCAGTAGTCTGGTTATTAGTAAGCACATTCGCCGTTGCGCGGGCGTTTTTGTACCTGACAGAGATGAGAATCGACAAGAGAAATCGCAAAATTGCGAAATGGGTTCTTCAAAAGGAGGTCACCCTAAGGGATTTACTGGCAGCAGACCTGGATAACGATGGATGTATCAGCAAATCAGAGTTCGTCTTGTACAAGCTCAAGGAGATGGGGATGGTAGCTAATAAGGACATCCTGCTGATTTGCAAACAGTTTGATTCTTTAGGGCATAGCAATGATGGCAAGATTACTCTTGTTGACCTAATGGAAGGTGATAACTGA

Protein Analysis

403

Amino Acids

44.71

Weight (kDa)

8.46

Isoelectric Point (pI)

33.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ion_trans PF00520 121 - 197 1.3e-06 Ion transport protein
Ion_trans_2 PF07885 126 - 202 8.9e-13 Ion channel
Ion_trans_2 PF07885 249 - 319 1.1e-12 Ion channel
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014070)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G05190
fragaria_vesca FvH4_6g43280
malus_domestica MD09G1107800.v1.1 MD09G1108400.v1.1 MD17G1096300.v1.1
prunus_persica Prupe.1G100300_v2.0.a1
pyrus_communis pycom09g03090 pycom17g09240
rosa_chinensis RchiOBHm_Chr2g0159551
rosa_laevigata RLG00000021165
rosa_multiflora Rmu_sc0004260.1_g000004 Rmu_sc0012414.1_g000013
rosa_roxburghii Rroxscaffold_2G00090410
rosa_rugosa Rorug02G0476800
rosa_samantha Rh2BG556800 Rh2CG527000
rosa_wichuraiana Rw2G044970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 337
AccI GTMKAC 1 cut(s) 408
AccII CGCG 1 cut(s) 934
AciI CCGC 2 cut(s) 420, 934
AclWI GGATC 3 cut(s) 314, 327, 728
AcsI RAATTY 1 cut(s) 193
AcyI GRCGYC 1 cut(s) 462
AfaI GTAC 4 cut(s) 145, 470, 947, 1085
AfiI CCNNNNNNNGG 1 cut(s) 933
AgsI TTSAA 4 cut(s) 229, 664, 871, 1004
AjnI CCWGG 1 cut(s) 1041
AjuI GAANNNNNNNTTGG 2 cut(s) 184, 216
AluBI AGCT 8 cut(s) 44, 151, 272, 764, 782, 804, 1090, 1112
AluI AGCT 8 cut(s) 44, 151, 272, 764, 782, 804, 1090, 1112
Alw21I GWGCWC 1 cut(s) 644
Alw26I GTCTC 3 cut(s) 84, 140, 293
AlwI GGATC 3 cut(s) 314, 327, 728
AoxI GGCC 3 cut(s) 121, 452, 735
ApeKI GCWGC 4 cut(s) 32, 41, 68, 1034
ApoI RAATTY 1 cut(s) 193
Asp700I GAANNNNTTC 1 cut(s) 659
AspLEI GCGC 1 cut(s) 934
AspS9I GGNCC 1 cut(s) 122
AsuC2I CCSGG 1 cut(s) 518
AsuHPI GGTGA 6 cut(s) 59, 179, 277, 518, 613, 1006
AxyI CCTNAGG 1 cut(s) 1019
BamHI GGATCC 1 cut(s) 319
Bbv12I GWGCWC 1 cut(s) 644
BbvI GCAGC 4 cut(s) 44, 53, 80, 1046
BccI CCATC 5 cut(s) 283, 1046, 1093, 1099, 1163
BceAI ACGGC 2 cut(s) 117, 911
BciT130I CCWGG 1 cut(s) 1043
BclI TGATCA 1 cut(s) 7
BcnI CCSGG 1 cut(s) 518
BcoDI GTCTC 3 cut(s) 84, 140, 293
BfaI CTAG 1 cut(s) 60
BfmI CTRYAG 2 cut(s) 765, 799
BfuAI ACCTGC 1 cut(s) 337
BisI GCNGC 4 cut(s) 33, 42, 69, 1035
BlsI GCNGC 4 cut(s) 34, 43, 70, 1036
BmcAI AGTACT 1 cut(s) 145
Bme1390I CCNGG 2 cut(s) 518, 1043
BmgT120I GGNCC 1 cut(s) 122
BmiI GGNNCC 1 cut(s) 321
BmrFI CCNGG 2 cut(s) 518, 1043
BpuEI CTTGAG 3 cut(s) 88, 124, 1076
BpuMI CCSGG 1 cut(s) 518
BsaBI GATNNNNATC 1 cut(s) 962
BsaHI GRCGYC 1 cut(s) 462
Bsc4I CCNNNNNNNGG 1 cut(s) 933
Bse1I ACTGG 2 cut(s) 455, 1035
Bse21I CCTNAGG 1 cut(s) 1019
Bse3DI GCAATG 2 cut(s) 216, 1171
Bse8I GATNNNNATC 1 cut(s) 962
BseBI CCWGG 1 cut(s) 1043
BseGI GGATG 7 cut(s) 10, 442, 655, 714, 1061, 1110, 1122
BseJI GATNNNNATC 1 cut(s) 962
BseLI CCNNNNNNNGG 1 cut(s) 933
BseMI GCAATG 2 cut(s) 216, 1171
BseMII CTCAG 3 cut(s) 161, 282, 444
BseNI ACTGG 2 cut(s) 455, 1035
BseXI GCAGC 4 cut(s) 44, 53, 80, 1046
BseYI CCCAGC 1 cut(s) 804
BsgI GTGCAG 1 cut(s) 475
Bsh1236I CGCG 1 cut(s) 934
BshFI GGCC 3 cut(s) 123, 454, 737
BsiHKAI GWGCWC 1 cut(s) 644
BsiSI CCGG 1 cut(s) 518
BslFI GGGAC 2 cut(s) 70, 500
BslI CCNNNNNNNGG 1 cut(s) 933
BsmAI GTCTC 3 cut(s) 84, 140, 293
BsmBI CGTCTC 2 cut(s) 140, 293
BsmFI GGGAC 2 cut(s) 70, 500
BsnI GGCC 3 cut(s) 123, 454, 737
Bsp1286I GDGCHC 1 cut(s) 644
Bsp1407I TGTACA 1 cut(s) 1083
Bsp143I GATC 5 cut(s) 7, 115, 260, 319, 720
BspACI CCGC 2 cut(s) 420, 934
BspANI GGCC 3 cut(s) 123, 454, 737
BspCNI CTCAG 3 cut(s) 160, 281, 443
BspFNI CGCG 1 cut(s) 934
BspLI GGNNCC 1 cut(s) 321
BspMI ACCTGC 1 cut(s) 337
BspPI GGATC 3 cut(s) 314, 327, 728
BsrDI GCAATG 2 cut(s) 216, 1171
BsrGI TGTACA 1 cut(s) 1083
BsrI ACTGG 2 cut(s) 455, 1035
BssMI GATC 5 cut(s) 7, 115, 260, 319, 720
BssNI GRCGYC 1 cut(s) 462
Bst2UI CCWGG 1 cut(s) 1043
Bst4CI ACNGT 4 cut(s) 646, 745, 847, 1143
Bst6I CTCTTC 1 cut(s) 545
BstACI GRCGYC 1 cut(s) 462
BstAUI TGTACA 1 cut(s) 1083
BstC8I GCNNGC 2 cut(s) 363, 936
BstDEI CTNAG 4 cut(s) 147, 268, 430, 1019
BstEII GGTNACC 2 cut(s) 601, 1012
BstF5I GGATG 7 cut(s) 10, 442, 655, 714, 1061, 1110, 1122
BstFNI CGCG 1 cut(s) 934
BstHHI GCGC 1 cut(s) 934
BstKTI GATC 5 cut(s) 10, 118, 263, 322, 723
BstMAI GTCTC 3 cut(s) 84, 140, 293
BstMBI GATC 5 cut(s) 7, 115, 260, 319, 720
BstMWI GCNNNNNNNGC 5 cut(s) 38, 41, 129, 788, 1170
BstNI CCWGG 1 cut(s) 1043
BstPI GGTNACC 2 cut(s) 601, 1012
BstSCI CCNGG 2 cut(s) 516, 1041
BstSFI CTRYAG 2 cut(s) 765, 799
BstUI CGCG 1 cut(s) 934
BstV1I GCAGC 4 cut(s) 44, 53, 80, 1046
BstX2I RGATCY 1 cut(s) 319
BstYI RGATCY 1 cut(s) 319
Bsu36I CCTNAGG 1 cut(s) 1019
BsuRI GGCC 3 cut(s) 123, 454, 737
BtsCI GGATG 7 cut(s) 10, 442, 655, 714, 1061, 1110, 1122
BtsIMutI CAGTG 3 cut(s) 285, 462, 843
BveI ACCTGC 1 cut(s) 337
Cac8I GCNNGC 2 cut(s) 363, 936
CfoI GCGC 1 cut(s) 934
Cfr13I GGNCC 1 cut(s) 122
CseI GACGC 1 cut(s) 470
Csp6I GTAC 4 cut(s) 144, 469, 946, 1084
CviAII CATG 2 cut(s) 466, 593
CviQI GTAC 4 cut(s) 144, 469, 946, 1084
DdeI CTNAG 4 cut(s) 147, 268, 430, 1019
DpnI GATC 5 cut(s) 9, 117, 262, 321, 722
DpnII GATC 5 cut(s) 7, 115, 260, 319, 720
Eam1104I CTCTTC 1 cut(s) 545
EarI CTCTTC 1 cut(s) 545
Eco81I CCTNAGG 1 cut(s) 1019
Eco91I GGTNACC 2 cut(s) 601, 1012
EcoO65I GGTNACC 2 cut(s) 601, 1012
EcoRII CCWGG 1 cut(s) 1041
Esp3I CGTCTC 2 cut(s) 140, 293
FaeI CATG 2 cut(s) 469, 596
FalI AAGNNNNNCTT 2 cut(s) 716, 748
FaqI GGGAC 2 cut(s) 70, 500
FatI CATG 2 cut(s) 465, 592
FauI CCCGC 1 cut(s) 927
FbaI TGATCA 1 cut(s) 7
FblI GTMKAC 1 cut(s) 408
Fnu4HI GCNGC 4 cut(s) 33, 42, 69, 1035
FokI GGATG 7 cut(s) 17, 449, 662, 721, 1068, 1109, 1117
Fsp4HI GCNGC 4 cut(s) 33, 42, 69, 1035
FspBI CTAG 1 cut(s) 60
GlaI GCGC 1 cut(s) 933
GluI GCNGC 4 cut(s) 33, 42, 69, 1035
GsaI CCCAGC 1 cut(s) 808
HaeIII GGCC 3 cut(s) 123, 454, 737
HapII CCGG 1 cut(s) 518
HgaI GACGC 1 cut(s) 470
HhaI GCGC 1 cut(s) 934
Hin1I GRCGYC 1 cut(s) 462
Hin1II CATG 2 cut(s) 469, 596
Hin6I GCGC 1 cut(s) 932
HinP1I GCGC 1 cut(s) 932
HincII GTYRAC 1 cut(s) 1189
HindII GTYRAC 1 cut(s) 1189
HinfI GANTC 5 cut(s) 304, 311, 626, 963, 1148
HpaII CCGG 1 cut(s) 518
HphI GGTGA 6 cut(s) 59, 179, 277, 518, 613, 1006
Hpy166II GTNNAC 4 cut(s) 285, 409, 460, 1189
Hpy188I TCNGA 1 cut(s) 1072
Hpy188III TCNNGA 2 cut(s) 87, 308
Hpy8I GTNNAC 4 cut(s) 285, 409, 460, 1189
Hpy99I CGWCG 1 cut(s) 261
HpyAV CCTTC 6 cut(s) 47, 135, 240, 376, 694, 1193
HpyCH4III ACNGT 4 cut(s) 646, 745, 847, 1143
HpyCH4IV ACGT 1 cut(s) 256
HpyCH4V TGCA 6 cut(s) 32, 209, 492, 791, 896, 1137
HpyF10VI GCNNNNNNNGC 5 cut(s) 38, 41, 129, 788, 1170
HpyF3I CTNAG 4 cut(s) 147, 268, 430, 1019
HpySE526I ACGT 1 cut(s) 256
Hsp92I GRCGYC 1 cut(s) 462
Hsp92II CATG 2 cut(s) 469, 596
HspAI GCGC 1 cut(s) 932
Ksp22I TGATCA 1 cut(s) 7
Kzo9I GATC 5 cut(s) 7, 115, 260, 319, 720
LmnI GCTCC 1 cut(s) 277
Lsp1109I GCAGC 4 cut(s) 44, 53, 80, 1046
MaeI CTAG 1 cut(s) 60
MaeII ACGT 1 cut(s) 256
MaeIII GTNAC 8 cut(s) 442, 481, 506, 601, 614, 829, 838, 1012
MalI GATC 5 cut(s) 9, 117, 262, 321, 722
MboI GATC 5 cut(s) 7, 115, 260, 319, 720
MboII GAAGA 7 cut(s) 62, 189, 192, 532, 544, 897, 992
MflI RGATCY 1 cut(s) 319
MhlI GDGCHC 1 cut(s) 644
MluCI AATT 3 cut(s) 193, 393, 984
MnlI CCTC 6 cut(s) 31, 699, 748, 787, 875, 1003
MroXI GAANNNNTTC 1 cut(s) 659
MseI TTAA 1 cut(s) 294
MslI CAYNNNNRTG 1 cut(s) 1164
MspA1I CMGCKG 3 cut(s) 44, 420, 804
MspI CCGG 1 cut(s) 518
MspR9I CCNGG 2 cut(s) 518, 1043
MvaI CCWGG 1 cut(s) 1043
MvnI CGCG 1 cut(s) 934
MwoI GCNNNNNNNGC 5 cut(s) 38, 41, 129, 788, 1170
NciI CCSGG 1 cut(s) 518
NdeII GATC 5 cut(s) 7, 115, 260, 319, 720
NlaIII CATG 2 cut(s) 469, 596
NlaIV GGNNCC 1 cut(s) 321
NmuCI GTSAC 7 cut(s) 442, 481, 506, 601, 614, 838, 1012
PdmI GAANNNNTTC 1 cut(s) 659
PfeI GAWTC 5 cut(s) 304, 311, 626, 963, 1148
PflFI GACNNNGTC 1 cut(s) 512
PfoI TCCNGGA 1 cut(s) 516
PkrI GCNGC 4 cut(s) 34, 43, 70, 1036
Psp6I CCWGG 1 cut(s) 1041
PspEI GGTNACC 2 cut(s) 601, 1012
PspFI CCCAGC 1 cut(s) 804
PspGI CCWGG 1 cut(s) 1041
PspN4I GGNNCC 1 cut(s) 321
PspPI GGNCC 1 cut(s) 122
PsuI RGATCY 1 cut(s) 319
PsyI GACNNNGTC 1 cut(s) 512
PvuII CAGCTG 2 cut(s) 44, 804
RsaI GTAC 4 cut(s) 145, 470, 947, 1085
RsaNI GTAC 4 cut(s) 144, 469, 946, 1084
RseI CAYNNNNRTG 1 cut(s) 1164
SaqAI TTAA 1 cut(s) 294
SatI GCNGC 4 cut(s) 33, 42, 69, 1035
Sau3AI GATC 5 cut(s) 7, 115, 260, 319, 720
Sau96I GGNCC 1 cut(s) 122
ScaI AGTACT 1 cut(s) 145
ScrFI CCNGG 2 cut(s) 518, 1043
SduI GDGCHC 1 cut(s) 644
SfcI CTRYAG 2 cut(s) 765, 799
SmiMI CAYNNNNRTG 1 cut(s) 1164
SmlI CTYRAG 3 cut(s) 103, 139, 1091
SmoI CTYRAG 3 cut(s) 103, 139, 1091
Sse9I AATT 3 cut(s) 193, 393, 984
SsiI CCGC 2 cut(s) 420, 934
SspMI CTAG 1 cut(s) 60
StyD4I CCNGG 2 cut(s) 516, 1041
TaaI ACNGT 4 cut(s) 646, 745, 847, 1143
TaiI ACGT 1 cut(s) 259
TaqI TCGA 3 cut(s) 259, 740, 966
TasI AATT 3 cut(s) 193, 393, 984
TatI WGTACW 3 cut(s) 143, 468, 1083
TfiI GAWTC 5 cut(s) 304, 311, 626, 963, 1148
Tru1I TTAA 1 cut(s) 294
Tru9I TTAA 1 cut(s) 294
TscAI CASTG 3 cut(s) 285, 462, 843
TseFI GTSAC 7 cut(s) 442, 481, 506, 601, 614, 838, 1012
TseI GCWGC 4 cut(s) 32, 41, 68, 1034
Tsp45I GTSAC 7 cut(s) 442, 481, 506, 601, 614, 838, 1012
TspDTI ATGAA 4 cut(s) 358, 544, 565, 676
TspRI CASTG 3 cut(s) 285, 462, 843
Tth111I GACNNNGTC 1 cut(s) 512
XapI RAATTY 1 cut(s) 193
XmiI GTMKAC 1 cut(s) 408
XmnI GAANNNNTTC 1 cut(s) 659
XspI CTAG 1 cut(s) 60
ZrmI AGTACT 1 cut(s) 145
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.