Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0014070

Physical Location & Seq

Genomic Coordinates Forward (+)

7983056 .. 7983433

Gene Structure 378 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1107800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGGTTTGTTCCTTATGTGCCTGTTTGAATAATTTGCTTAGGACGCTTACGGACAACACGGTGGTGGGGGTGTCAAAAAGATTTGATAAGAGGTTGCAACTGGTAGGCGTCGGTTACCGTGCTACTTTAGTAGGAAAGATCTTGGTACTAAGTCTTGGATTCTCCCATCCGGTTAGGATGGATATCCCTCATGGCATACAAGTCAAGGTCGAAGAAAACACCAGAATCGTTGTTAGCGGATACGACAAGAGTGCTATCGGTCAGTTTGCTGCGTCGATCTGGAAACGGAGACCCCCGGAACAGTACAAAGGTAAGGGTGTGAAATATGCTGATGAAATCATAAGAAGGAAGGAGGGAAAAACAGGGAAGAAGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0007275 GO:0008150 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009719 GO:0009725 GO:0009735 GO:0009790 GO:0009791 GO:0009793 GO:0009941 GO:0010033 GO:0010154 GO:0016020 GO:0022414 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L6

Protein Analysis

126

Amino Acids

13.94

Weight (kDa)

10.11

Isoelectric Point (pI)

34.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L6	PF00347	35 - 109	2.2e-21	Ribosomal protein L6

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0014070)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05190
fragaria_vesca	FvH4_6g43280
malus_domestica	MD09G1107800.v1.1 MD09G1108400.v1.1 MD17G1096300.v1.1
prunus_persica	Prupe.1G100300_v2.0.a1
pyrus_communis	pycom09g03090 pycom17g09240
rosa_chinensis	RchiOBHm_Chr2g0159551
rosa_laevigata	RLG00000021165
rosa_multiflora	Rmu_sc0004260.1_g000004 Rmu_sc0012414.1_g000013
rosa_roxburghii	Rroxscaffold_2G00090410
rosa_rugosa	Rorug02G0476800
rosa_samantha	Rh2BG556800 Rh2CG527000
rosa_wichuraiana	Rw2G044970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	237
AcyI	GRCGYC	1 cut(s)	108
AfaI	GTAC	2 cut(s)	147, 305
AgsI	TTSAA	1 cut(s)	28
AleI	CACNNNNGTG	1 cut(s)	62
Alw26I	GTCTC	1 cut(s)	283
ApeKI	GCWGC	1 cut(s)	269
AsuC2I	CCSGG	1 cut(s)	296
BbvI	GCAGC	1 cut(s)	256
BccI	CCATC	2 cut(s)	172, 174
BcgI	CGANNNNNNTGC	2 cut(s)	233, 267
BciVI	GTATCC	1 cut(s)	233
BcnI	CCSGG	1 cut(s)	296
BcoDI	GTCTC	1 cut(s)	283
BfuI	GTATCC	1 cut(s)	233
BglII	AGATCT	1 cut(s)	138
BisI	GCNGC	1 cut(s)	270
BlsI	GCNGC	1 cut(s)	271
Bme1390I	CCNGG	1 cut(s)	296
BmrFI	CCNGG	1 cut(s)	296
Bpu10I	CCTNAGC	1 cut(s)	38
BpuMI	CCSGG	1 cut(s)	296
BsaBI	GATNNNNATC	1 cut(s)	182
BsaHI	GRCGYC	1 cut(s)	108
BsaI	GGTCTC	1 cut(s)	283
BsaJI	CCNNGG	1 cut(s)	294
BsaWI	WCCGGW	1 cut(s)	169
Bse1I	ACTGG	1 cut(s)	105
Bse8I	GATNNNNATC	1 cut(s)	182
BseDI	CCNNGG	1 cut(s)	294
BseGI	GGATG	2 cut(s)	166, 183
BseJI	GATNNNNATC	1 cut(s)	182
BseNI	ACTGG	1 cut(s)	105
BseXI	GCAGC	1 cut(s)	256
BsiSI	CCGG	2 cut(s)	170, 296
BsmAI	GTCTC	1 cut(s)	283
Bso31I	GGTCTC	1 cut(s)	283
Bsp143I	GATC	2 cut(s)	138, 276
BspACI	CCGC	1 cut(s)	237
BspTNI	GGTCTC	1 cut(s)	283
BsrI	ACTGG	1 cut(s)	105
BssECI	CCNNGG	1 cut(s)	294
BssMI	GATC	2 cut(s)	138, 276
BssNI	GRCGYC	1 cut(s)	108
Bst4CI	ACNGT	3 cut(s)	61, 119, 303
BstACI	GRCGYC	1 cut(s)	108
BstDEI	CTNAG	2 cut(s)	38, 149
BstEII	GGTNACC	1 cut(s)	113
BstF5I	GGATG	2 cut(s)	166, 183
BstKTI	GATC	2 cut(s)	141, 279
BstMAI	GTCTC	1 cut(s)	283
BstMBI	GATC	2 cut(s)	138, 276
BstMWI	GCNNNNNNNGC	1 cut(s)	43
BstPI	GGTNACC	1 cut(s)	113
BstSCI	CCNGG	1 cut(s)	294
BstV1I	GCAGC	1 cut(s)	256
BstX2I	RGATCY	1 cut(s)	138
BstYI	RGATCY	1 cut(s)	138
BsuI	GTATCC	1 cut(s)	233
BtsCI	GGATG	2 cut(s)	166, 183
CseI	GACGC	3 cut(s)	52, 97, 261
Csp6I	GTAC	2 cut(s)	146, 304
CviAII	CATG	1 cut(s)	191
CviQI	GTAC	2 cut(s)	146, 304
DdeI	CTNAG	2 cut(s)	38, 149
DpnI	GATC	2 cut(s)	140, 278
DpnII	GATC	2 cut(s)	138, 276
Eco31I	GGTCTC	1 cut(s)	283
Eco32I	GATATC	1 cut(s)	184
Eco91I	GGTNACC	1 cut(s)	113
EcoO65I	GGTNACC	1 cut(s)	113
EcoRV	GATATC	1 cut(s)	184
FaeI	CATG	1 cut(s)	194
FaiI	YATR	5 cut(s)	16, 192, 197, 327, 341
FatI	CATG	1 cut(s)	190
Fnu4HI	GCNGC	1 cut(s)	270
FokI	GGATG	2 cut(s)	153, 190
Fsp4HI	GCNGC	1 cut(s)	270
GluI	GCNGC	1 cut(s)	270
HapII	CCGG	2 cut(s)	170, 296
HgaI	GACGC	3 cut(s)	52, 97, 261
Hin1I	GRCGYC	1 cut(s)	108
Hin1II	CATG	1 cut(s)	194
HinfI	GANTC	2 cut(s)	159, 225
HpaII	CCGG	2 cut(s)	170, 296
Hpy188III	TCNNGA	1 cut(s)	280
Hpy99I	CGWCG	2 cut(s)	113, 277
HpyAV	CCTTC	2 cut(s)	339, 343
HpyCH4III	ACNGT	3 cut(s)	61, 119, 303
HpyCH4V	TGCA	1 cut(s)	97
HpyF10VI	GCNNNNNNNGC	1 cut(s)	43
HpyF3I	CTNAG	2 cut(s)	38, 149
Hsp92I	GRCGYC	1 cut(s)	108
Hsp92II	CATG	1 cut(s)	194
Kzo9I	GATC	2 cut(s)	138, 276
LpnPI	CCDG	7 cut(s)	34, 86, 183, 235, 265, 309, 348
Lsp1109I	GCAGC	1 cut(s)	256
MaeIII	GTNAC	1 cut(s)	113
MalI	GATC	2 cut(s)	140, 278
MboI	GATC	2 cut(s)	138, 276
MboII	GAAGA	1 cut(s)	224
MflI	RGATCY	1 cut(s)	138
MluCI	AATT	1 cut(s)	31
MnlI	CCTC	3 cut(s)	84, 198, 346
MslI	CAYNNNNRTG	1 cut(s)	62
MspI	CCGG	2 cut(s)	170, 296
MspR9I	CCNGG	1 cut(s)	296
MwoI	GCNNNNNNNGC	1 cut(s)	43
NciI	CCSGG	1 cut(s)	296
NdeII	GATC	2 cut(s)	138, 276
NlaIII	CATG	1 cut(s)	194
OliI	CACNNNNGTG	1 cut(s)	62
PfeI	GAWTC	2 cut(s)	159, 225
PkrI	GCNGC	1 cut(s)	271
PspEI	GGTNACC	1 cut(s)	113
PsuI	RGATCY	1 cut(s)	138
RsaI	GTAC	2 cut(s)	147, 305
RsaNI	GTAC	2 cut(s)	146, 304
RseI	CAYNNNNRTG	1 cut(s)	62
SatI	GCNGC	1 cut(s)	270
Sau3AI	GATC	2 cut(s)	138, 276
ScrFI	CCNGG	1 cut(s)	296
SetI	ASST	3 cut(s)	95, 210, 313
SmiMI	CAYNNNNRTG	1 cut(s)	62
Sse9I	AATT	1 cut(s)	31
SsiI	CCGC	1 cut(s)	237
StyD4I	CCNGG	1 cut(s)	294
TaaI	ACNGT	3 cut(s)	61, 119, 303
TaqI	TCGA	2 cut(s)	210, 275
TaqII	GACCGA	1 cut(s)	248
TasI	AATT	1 cut(s)	31
TatI	WGTACW	1 cut(s)	303
TfiI	GAWTC	2 cut(s)	159, 225
TseI	GCWGC	1 cut(s)	269
TspDTI	ATGAA	1 cut(s)	348
TspGWI	ACGGA	2 cut(s)	65, 301

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.