AT1G05440

ERG2 and Sigma1 receptor like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0011384
Physical Location & Seq
Reverse (-)
1596007 .. 1597940
1934 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G05440.1

Sequence Viewer

Length: 1182 bp
ATGAAATCTAGGGCCAACGAAAATCAGATGATAAACAGAGAAACCATGAAAGGAAAGATTTTAGTTTCACCGTCGGAGAAATCAATGACATCGAGCACAACAACAACAACGACGACTACTACAACTGTATCTACGGAAGATTGGGAGAGAAGAGACAGTAATTGTTACTTCCCAGACTGTCGTAAAGATGCGAATTGTAGCTGCGAGATTTGTCTTGATAGTCTCAACGCTACGCTTGATCTCATGCCTCTCAGTGTTCAAAAAAGCTCTCTCACTAAGCTTTCTTCTGCATCCAATTTCAAATCCACCGTTGAATCTACTCCGACTTCGTTTGATCCAACGGTGGTCACCACCCCTGCTTCTGTTTCTCGCCCAATCTTGAAGTTGATGATCTCTTCCCCGAAGAAGAAACTGACCAAGAAATCAAAAGTTTTCGAGAATGAAGAACAGAGGAAAACGACGAAGAAAGAGAGAAGACTACTGATTGTTGTTTTTCTGAAAGTGATTTTGGTGATTGGGTTGGTTCTGGGTTTGGAATTAGGGTTTAGTTGGGTGCTTGAAGAGGTTTTTAAACCTGAATTTACAGAGGAGATTGTGAGGAACGCTTATGAGAGAACTCAGGCTGATCTTGATTTGGGGGTGAAGCTGAGACTCTTGGAAGATGAATTTAAGGGTTTTGTTACGAGTAGAAAGTTTTCGAGATGCACAGGTTCTGATTCTAAATGGAAAATCAATCAGGATGGACCAATGTTGAACTCAAAGTGTGTTCTGTACAAATCTGCCATTGAAGAGGTGAGTATATGGGGATGGCCTTTGCAGACATCTGGATTGTTCCATACCGGCTTCTCCTCGAGTTCGATCACCGTGTTATCAGGCCGAGTAACTGAGTGGACAGAGGGGAAATTCGGTTACTCAATACACGAGACCAACACTTCCTGGGGGAAAACCAAATGGAGCACATCGGTTCTGCAGCTAGATCCAAACACATGGGTTCTTGAGTACAGCCAAAGCTCGGTGATGGATGATAGTTCAAGTTTGTTGTCACTAACAATCGATATCATGGAACACTTGGTGTTCCGAGTAGCAAAGAATGTGAATCGGGAGCGTTATTGGATGTTTTCATCCTCACGACGATTGTATAGAGAAGCAGAGTCAAAGGCTAGCGCAATGACACCAACTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ERG2_Sigma1R

Protein Analysis

393

Amino Acids

44.49

Weight (kDa)

8.9

Isoelectric Point (pI)

37.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ERG2_Sigma1R PF04622 189 - 337 2.1e-07 ERG2 and Sigma1 receptor like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011384)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G05440
fragaria_vesca FvH4_4g16270
malus_domestica MD13G1194900.v1.1 MD16G1195700.v1.1
prunus_persica Prupe.1G015700_v2.0.a1
pyrus_communis pycom03g13620 pycom07g11900 pycom13g16710 pycom16g16490
rosa_chinensis RchiOBHm_Chr4g0415861
rosa_laevigata RLG00000008033
rosa_multiflora Rmu_co8517385.1_g000002 Rmu_sc0002438.1_g000006
rosa_roxburghii Rroxscaffold_5G00359720
rosa_rugosa Rorug04G0137000
rosa_samantha Rh4AG198900 Rh4BG196900 Rh4CG209800 Rh4DG196800
rosa_wichuraiana Rw4G016850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 329, 971
AcsI RAATTY 3 cut(s) 578, 665, 902
AdeI CACNNNGTG 1 cut(s) 1072
AfaI GTAC 2 cut(s) 773, 1001
AfiI CCNNNNNNNGG 1 cut(s) 1012
AgsI TTSAA 8 cut(s) 260, 301, 314, 382, 560, 754, 788, 1032
AjnI CCWGG 1 cut(s) 935
AjuI GAANNNNNNNTTGG 2 cut(s) 491, 523
AluBI AGCT 6 cut(s) 201, 267, 280, 646, 973, 1011
AluI AGCT 6 cut(s) 201, 267, 280, 646, 973, 1011
Alw21I GWGCWC 2 cut(s) 98, 959
Alw26I GTCTC 4 cut(s) 147, 227, 643, 917
AlwI GGATC 2 cut(s) 329, 971
AlwNI CAGNNNCTG 1 cut(s) 713
Ama87I CYCGRG 1 cut(s) 850
AoxI GGCC 3 cut(s) 12, 809, 874
ApeKI GCWGC 2 cut(s) 201, 970
ApoI RAATTY 3 cut(s) 578, 665, 902
Asp700I GAANNNNTTC 1 cut(s) 694
AspLEI GCGC 1 cut(s) 1166
AspS9I GGNCC 2 cut(s) 12, 743
AsuHPI GGTGA 7 cut(s) 60, 340, 523, 652, 805, 853, 1027
AsuNHI GCTAGC 1 cut(s) 1160
AvaI CYCGRG 1 cut(s) 850
AvaII GGWCC 1 cut(s) 743
BaeI ACNNNNGTAYC 2 cut(s) 111, 144
BauI CACGAG 1 cut(s) 920
BbsI GAAGAC 1 cut(s) 481
Bbv12I GWGCWC 2 cut(s) 98, 959
BbvI GCAGC 2 cut(s) 188, 982
BccI CCATC 3 cut(s) 734, 801, 1012
BciT130I CCWGG 1 cut(s) 937
BcoDI GTCTC 4 cut(s) 147, 227, 643, 917
BfaI CTAG 3 cut(s) 9, 974, 1161
BfmI CTRYAG 1 cut(s) 968
BisI GCNGC 2 cut(s) 202, 971
BlsI GCNGC 2 cut(s) 203, 972
Bme1390I CCNGG 1 cut(s) 937
Bme18I GGWCC 1 cut(s) 743
BmeT110I CYCGRG 1 cut(s) 850
BmgT120I GGNCC 2 cut(s) 12, 743
BmrFI CCNGG 1 cut(s) 937
BmsI GCATC 3 cut(s) 178, 299, 692
BmtI GCTAGC 1 cut(s) 1164
BpiI GAAGAC 1 cut(s) 481
BpuEI CTTGAG 1 cut(s) 1016
Bsa29I ATCGAT 1 cut(s) 1053
BsaI GGTCTC 1 cut(s) 917
BsaJI CCNNGG 1 cut(s) 936
Bsc4I CCNNNNNNNGG 1 cut(s) 1012
Bse118I RCCGGY 1 cut(s) 839
Bse3DI GCAATG 1 cut(s) 1173
BseBI CCWGG 1 cut(s) 937
BseCI ATCGAT 1 cut(s) 1053
BseDI CCNNGG 1 cut(s) 936
BseGI GGATG 6 cut(s) 290, 745, 812, 1027, 1119, 1121
BseLI CCNNNNNNNGG 1 cut(s) 1012
BseMI GCAATG 1 cut(s) 1173
BseMII CTCAG 4 cut(s) 265, 632, 638, 876
BseRI GAGGAG 2 cut(s) 602, 838
BseXI GCAGC 2 cut(s) 188, 982
BshFI GGCC 3 cut(s) 14, 811, 876
BshVI ATCGAT 1 cut(s) 1053
BsiHKAI GWGCWC 2 cut(s) 98, 959
BsiHKCI CYCGRG 1 cut(s) 850
BsiSI CCGG 1 cut(s) 840
BslI CCNNNNNNNGG 1 cut(s) 1012
BsmAI GTCTC 4 cut(s) 147, 227, 643, 917
BsnI GGCC 3 cut(s) 14, 811, 876
Bso31I GGTCTC 1 cut(s) 917
BsoBI CYCGRG 1 cut(s) 850
Bsp1286I GDGCHC 2 cut(s) 98, 959
Bsp1407I TGTACA 1 cut(s) 771
Bsp143I GATC 6 cut(s) 238, 334, 390, 625, 858, 976
BspANI GGCC 3 cut(s) 14, 811, 876
BspCNI CTCAG 4 cut(s) 264, 631, 639, 877
BspDI ATCGAT 1 cut(s) 1053
BspMAI CTGCAG 1 cut(s) 972
BspOI GCTAGC 1 cut(s) 1164
BspPI GGATC 2 cut(s) 329, 971
BspTNI GGTCTC 1 cut(s) 917
BsrDI GCAATG 1 cut(s) 1173
BsrFI RCCGGY 1 cut(s) 839
BsrGI TGTACA 1 cut(s) 771
BssAI RCCGGY 1 cut(s) 839
BssECI CCNNGG 1 cut(s) 936
BssMI GATC 6 cut(s) 238, 334, 390, 625, 858, 976
BssSI CACGAG 1 cut(s) 920
Bst2BI CACGAG 1 cut(s) 920
Bst2UI CCWGG 1 cut(s) 937
Bst4CI ACNGT 7 cut(s) 72, 127, 158, 179, 310, 343, 865
Bst6I CTCTTC 4 cut(s) 145, 400, 555, 783
BstAUI TGTACA 1 cut(s) 771
BstC8I GCNNGC 1 cut(s) 1162
BstDEI CTNAG 6 cut(s) 251, 276, 618, 647, 885, 1179
BstEII GGTNACC 1 cut(s) 346
BstF5I GGATG 6 cut(s) 290, 745, 812, 1027, 1119, 1121
BstHHI GCGC 1 cut(s) 1166
BstKTI GATC 6 cut(s) 241, 337, 393, 628, 861, 979
BstMAI GTCTC 4 cut(s) 147, 227, 643, 917
BstMBI GATC 6 cut(s) 238, 334, 390, 625, 858, 976
BstNI CCWGG 1 cut(s) 937
BstPI GGTNACC 1 cut(s) 346
BstSCI CCNGG 1 cut(s) 935
BstSFI CTRYAG 1 cut(s) 968
BstV1I GCAGC 2 cut(s) 188, 982
BstV2I GAAGAC 1 cut(s) 481
BstX2I RGATCY 1 cut(s) 976
BstXI CCANNNNNNTGG 1 cut(s) 987
BstYI RGATCY 1 cut(s) 976
Bsu15I ATCGAT 1 cut(s) 1053
BsuRI GGCC 3 cut(s) 14, 811, 876
BsuTUI ATCGAT 1 cut(s) 1053
BtsCI GGATG 6 cut(s) 290, 745, 812, 1027, 1119, 1121
BtsIMutI CAGTG 1 cut(s) 259
Cac8I GCNNGC 1 cut(s) 1162
CaiI CAGNNNCTG 1 cut(s) 713
CfoI GCGC 1 cut(s) 1166
Cfr10I RCCGGY 1 cut(s) 839
Cfr13I GGNCC 2 cut(s) 12, 743
ClaI ATCGAT 1 cut(s) 1053
Csp6I GTAC 2 cut(s) 772, 1000
CviAII CATG 4 cut(s) 46, 244, 987, 1060
CviQI GTAC 2 cut(s) 772, 1000
DdeI CTNAG 6 cut(s) 251, 276, 618, 647, 885, 1179
DpnI GATC 6 cut(s) 240, 336, 392, 627, 860, 978
DpnII GATC 6 cut(s) 238, 334, 390, 625, 858, 976
DraI TTTAAA 1 cut(s) 571
DraIII CACNNNGTG 1 cut(s) 1072
Eam1104I CTCTTC 4 cut(s) 145, 400, 555, 783
EarI CTCTTC 4 cut(s) 145, 400, 555, 783
Eco31I GGTCTC 1 cut(s) 917
Eco32I GATATC 1 cut(s) 1057
Eco47I GGWCC 1 cut(s) 743
Eco88I CYCGRG 1 cut(s) 850
Eco91I GGTNACC 1 cut(s) 346
EcoO65I GGTNACC 1 cut(s) 346
EcoRII CCWGG 1 cut(s) 935
EcoRV GATATC 1 cut(s) 1057
FaeI CATG 4 cut(s) 49, 247, 990, 1063
FaiI YATR 9 cut(s) 47, 245, 609, 800, 802, 837, 988, 1061, 1140
FatI CATG 4 cut(s) 45, 243, 986, 1059
Fnu4HI GCNGC 2 cut(s) 202, 971
FokI GGATG 6 cut(s) 277, 752, 819, 1034, 1108, 1126
Fsp4HI GCNGC 2 cut(s) 202, 971
FspBI CTAG 3 cut(s) 9, 974, 1161
GlaI GCGC 1 cut(s) 1165
GluI GCNGC 2 cut(s) 202, 971
HaeIII GGCC 3 cut(s) 14, 811, 876
HapII CCGG 1 cut(s) 840
HhaI GCGC 1 cut(s) 1166
Hin1II CATG 4 cut(s) 49, 247, 990, 1063
Hin6I GCGC 1 cut(s) 1164
HinP1I GCGC 1 cut(s) 1164
HindIII AAGCTT 1 cut(s) 278
HinfI GANTC 5 cut(s) 314, 651, 716, 1096, 1151
HpaII CCGG 1 cut(s) 840
HphI GGTGA 7 cut(s) 60, 340, 523, 652, 805, 853, 1027
Hpy166II GTNNAC 1 cut(s) 891
Hpy188I TCNGA 6 cut(s) 27, 76, 324, 498, 715, 1079
Hpy8I GTNNAC 1 cut(s) 891
Hpy99I CGWCG 4 cut(s) 76, 115, 463, 1134
HpyCH4III ACNGT 7 cut(s) 72, 127, 158, 179, 310, 343, 865
HpyCH4V TGCA 4 cut(s) 290, 705, 817, 970
HpyF3I CTNAG 6 cut(s) 251, 276, 618, 647, 885, 1179
Hsp92II CATG 4 cut(s) 49, 247, 990, 1063
HspAI GCGC 1 cut(s) 1164
Kzo9I GATC 6 cut(s) 238, 334, 390, 625, 858, 976
LmnI GCTCC 2 cut(s) 954, 1102
Lsp1109I GCAGC 2 cut(s) 188, 982
LweI GCATC 3 cut(s) 178, 299, 692
MaeI CTAG 3 cut(s) 9, 974, 1161
MaeIII GTNAC 6 cut(s) 164, 346, 679, 880, 908, 1041
MalI GATC 6 cut(s) 240, 336, 392, 627, 860, 978
MboI GATC 6 cut(s) 238, 334, 390, 625, 858, 976
MflI RGATCY 1 cut(s) 976
MhlI GDGCHC 2 cut(s) 98, 959
MluCI AATT 7 cut(s) 160, 193, 295, 536, 578, 665, 902
MlyI GAGTC 2 cut(s) 645, 1160
MmeI TCCRAC 3 cut(s) 54, 347, 362
MnlI CCTC 9 cut(s) 258, 444, 556, 580, 591, 784, 859, 889, 1135
MroXI GAANNNNTTC 1 cut(s) 694
MseI TTAA 2 cut(s) 570, 669
MspI CCGG 1 cut(s) 840
MspR9I CCNGG 1 cut(s) 937
MvaI CCWGG 1 cut(s) 937
NdeII GATC 6 cut(s) 238, 334, 390, 625, 858, 976
NheI GCTAGC 1 cut(s) 1160
NlaIII CATG 4 cut(s) 49, 247, 990, 1063
NmeAIII GCCGAG 1 cut(s) 902
NmuCI GTSAC 2 cut(s) 346, 1041
PaeR7I CTCGAG 1 cut(s) 850
PdmI GAANNNNTTC 1 cut(s) 694
PfeI GAWTC 3 cut(s) 314, 716, 1096
PkrI GCNGC 2 cut(s) 203, 972
PleI GAGTC 2 cut(s) 645, 1159
PpsI GAGTC 2 cut(s) 645, 1159
Psp6I CCWGG 1 cut(s) 935
PspEI GGTNACC 1 cut(s) 346
PspGI CCWGG 1 cut(s) 935
PspPI GGNCC 2 cut(s) 12, 743
PspXI VCTCGAGB 1 cut(s) 850
PstI CTGCAG 1 cut(s) 972
PstNI CAGNNNCTG 1 cut(s) 713
PsuI RGATCY 1 cut(s) 976
RsaI GTAC 2 cut(s) 773, 1001
RsaNI GTAC 2 cut(s) 772, 1000
SaqAI TTAA 2 cut(s) 570, 669
SatI GCNGC 2 cut(s) 202, 971
Sau3AI GATC 6 cut(s) 238, 334, 390, 625, 858, 976
Sau96I GGNCC 2 cut(s) 12, 743
SchI GAGTC 2 cut(s) 645, 1160
ScrFI CCNGG 1 cut(s) 937
SduI GDGCHC 2 cut(s) 98, 959
SfaNI GCATC 3 cut(s) 178, 299, 692
SfcI CTRYAG 1 cut(s) 968
Sfr274I CTCGAG 1 cut(s) 850
SinI GGWCC 1 cut(s) 743
SlaI CTCGAG 1 cut(s) 850
SmlI CTYRAG 2 cut(s) 850, 995
SmoI CTYRAG 2 cut(s) 850, 995
Sse9I AATT 7 cut(s) 160, 193, 295, 536, 578, 665, 902
SspMI CTAG 3 cut(s) 9, 974, 1161
StyD4I CCNGG 1 cut(s) 935
TaaI ACNGT 7 cut(s) 72, 127, 158, 179, 310, 343, 865
TaqI TCGA 6 cut(s) 92, 435, 698, 851, 857, 1053
TasI AATT 7 cut(s) 160, 193, 295, 536, 578, 665, 902
TatI WGTACW 2 cut(s) 771, 999
TfiI GAWTC 3 cut(s) 314, 716, 1096
Tru1I TTAA 2 cut(s) 570, 669
Tru9I TTAA 2 cut(s) 570, 669
TscAI CASTG 1 cut(s) 259
TseFI GTSAC 2 cut(s) 346, 1041
TseI GCWGC 2 cut(s) 201, 970
Tsp45I GTSAC 2 cut(s) 346, 1041
TspDTI ATGAA 5 cut(s) 17, 62, 456, 678, 1110
TspGWI ACGGA 1 cut(s) 149
TspRI CASTG 1 cut(s) 259
VpaK11BI GGWCC 1 cut(s) 743
XapI RAATTY 3 cut(s) 578, 665, 902
XhoI CTCGAG 1 cut(s) 850
XmnI GAANNNNTTC 1 cut(s) 694
XspI CTAG 3 cut(s) 9, 974, 1161
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.