FvH4_4g16270

ERG2 and Sigma1 receptor like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0011384
Physical Location & Seq
Forward (+)
20266475 .. 20268288
1814 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g16270.t1

Sequence Viewer

Length: 1125 bp
ATGAAGAAAACCCTTGTTGTACCTTCCACCACGGCGTCATCTTCTTCGGTGTCTACATCATCCTCAGTGAAGTCAAGCACCACCGGTACTCCGGTGGAAGAAGACCGAACCGAAAGCTGCTACTACCCAGGTTGCAGAAAAGACGCCAATTGCAACTGTGATATATGCTTGGACAGCATCAATGCCACTCTTGATTTGATGCCCTTCAGCGTCCAGAAGAGCTCGCTGACCGAGTTCTCGTCTTCCAGGCCCGATCGGCCCAAAACTAGTGTTGAACACACGCCCATTTCTTTCGACGCTTCGGTTTTGTCCACCCCCATATCCACCTCTGCTCGGTTTCAAGCTTTTCCGGATCTCAAGCCTGATGCGAGATTGGATTTTGGGGATAGTGTGGTGGAGAAAGATGAGGGGAGGAAATGGGGTTTTGGGTCGTGGGATTGTTGGAAACTGATTGTGGGTTTGAGTTTGGTTTATGTGGTGGTTTATTGGGTTTATTCTAATTTGGGTTCTGGGGTTTTGAAACCTGTGTTGTCAGCTGAGATTGTGAGAAGTGTTAGTGAGAAATCTTGGGTTGTGCCAGATTTGAATGGGAGGCTGAGGTTCTTGCAGAAAGAGGTGCAGGGTCTTGCTCCTGGAAAGGTTTCTAATTGCAGCTATCCTAATTCGCTTTGGGAAATTACTCAGGATGGTTTGCTTCTGAGTTCACATTGTAAAATGTTCAAATCTGCAATTGAGGAGGTGAGCATATGGGGATGGCCTTTGCAGACTGCAGGGTTGCTCACAACTGGGTTTTCGTCTCGGTCTTTCACAATCTTATCAGGCAGAGTCACAGAGTGGTCGGATGGAAAGGTTGGATACGTGATTCGAAAGGAAAATTCGTCCTGGGTGCAAAGAAATTGGGGTGCCTCGGCAGTGCAGTTAGATCCCAATACATGGATTCTTGAGTATCGCCGGTGCTCAATATCTGACAACCAAAGATTGGTTTCAGCAGTACTTTCTTTCTTGAAGTATAAACTTTCAAGAGCATTTGGAAAGATTAAGCAGAAGTTTTGGCTCCCCTCTGCTTTTGGAAACAACCAGTACTATGACGTTACTGCTGAATACAACATTAAAATCCCAACCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ERG2_Sigma1R

Protein Analysis

375

Amino Acids

41.62

Weight (kDa)

8.73

Isoelectric Point (pI)

35.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ERG2_Sigma1R PF04622 155 - 321 1e-05 ERG2 and Sigma1 receptor like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011384)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G05440
fragaria_vesca FvH4_4g16270
malus_domestica MD13G1194900.v1.1 MD16G1195700.v1.1
prunus_persica Prupe.1G015700_v2.0.a1
pyrus_communis pycom03g13620 pycom07g11900 pycom13g16710 pycom16g16490
rosa_chinensis RchiOBHm_Chr4g0415861
rosa_laevigata RLG00000008033
rosa_multiflora Rmu_co8517385.1_g000002 Rmu_sc0002438.1_g000006
rosa_roxburghii Rroxscaffold_5G00359720
rosa_rugosa Rorug04G0137000
rosa_samantha Rh4AG198900 Rh4BG196900 Rh4CG209800 Rh4DG196800
rosa_wichuraiana Rw4G016850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 902
AccB7I CCANNNNNTGG 2 cut(s) 933, 979
AccI GTMKAC 1 cut(s) 53
AccIII TCCGGA 1 cut(s) 349
AclWI GGATC 2 cut(s) 360, 917
AcsI RAATTY 1 cut(s) 874
AcuI CTGAAG 1 cut(s) 190
AcyI GRCGYC 2 cut(s) 35, 144
AdeI CACNNNGTG 1 cut(s) 834
AfaI GTAC 4 cut(s) 21, 88, 993, 1082
AfiI CCNNNNNNNGG 3 cut(s) 333, 933, 979
AgeI ACCGGT 1 cut(s) 83
AgsI TTSAA 7 cut(s) 275, 341, 520, 586, 721, 1006, 1020
AhlI ACTAGT 1 cut(s) 266
AjnI CCWGG 4 cut(s) 127, 245, 631, 881
AluBI AGCT 5 cut(s) 117, 222, 344, 536, 654
AluI AGCT 5 cut(s) 117, 222, 344, 536, 654
Alw21I GWGCWC 2 cut(s) 224, 959
Alw26I GTCTC 1 cut(s) 801
AlwI GGATC 2 cut(s) 360, 917
Aor13HI TCCGGA 1 cut(s) 349
AoxI GGCC 3 cut(s) 248, 257, 755
ApeKI GCWGC 2 cut(s) 117, 651
ApoI RAATTY 1 cut(s) 874
AsiGI ACCGGT 1 cut(s) 83
Asp700I GAANNNNTTC 1 cut(s) 640
AspS9I GGNCC 2 cut(s) 249, 258
AsuHPI GGTGA 1 cut(s) 751
AsuII TTCGAA 1 cut(s) 865
BaeI ACNNNNGTAYC 2 cut(s) 78, 111
BanI GGYRCC 1 cut(s) 902
BanII GRGCYC 1 cut(s) 224
BbsI GAAGAC 2 cut(s) 108, 234
Bbv12I GWGCWC 2 cut(s) 224, 959
BbvCI CCTCAGC 1 cut(s) 596
BbvI GCAGC 2 cut(s) 104, 663
BccI CCATC 3 cut(s) 680, 747, 836
BceAI ACGGC 1 cut(s) 48
BciT130I CCWGG 4 cut(s) 129, 247, 633, 883
BciVI GTATCC 1 cut(s) 848
BcoDI GTCTC 1 cut(s) 801
BcuI ACTAGT 1 cut(s) 266
BfaI CTAG 1 cut(s) 267
BfmI CTRYAG 1 cut(s) 768
BfuI GTATCC 1 cut(s) 848
BglI GCCNNNNNGGC 1 cut(s) 256
BisI GCNGC 2 cut(s) 118, 652
BlsI GCNGC 2 cut(s) 119, 653
BmcAI AGTACT 2 cut(s) 993, 1082
Bme1390I CCNGG 4 cut(s) 129, 247, 633, 883
BmgT120I GGNCC 2 cut(s) 249, 258
BmiI GGNNCC 2 cut(s) 904, 1055
BmrFI CCNGG 4 cut(s) 129, 247, 633, 883
BmrI ACTGGG 1 cut(s) 795
BmsI GCATC 3 cut(s) 186, 189, 355
BmuI ACTGGG 1 cut(s) 795
BpiI GAAGAC 2 cut(s) 108, 234
Bpu10I CCTNAGC 1 cut(s) 596
Bpu14I TTCGAA 1 cut(s) 865
BpuEI CTTGAG 2 cut(s) 341, 962
BsaAI YACGTR 1 cut(s) 859
BsaHI GRCGYC 2 cut(s) 35, 144
BsaJI CCNNGG 4 cut(s) 30, 127, 882, 906
BsaWI WCCGGW 3 cut(s) 83, 91, 349
BsaXI ACNNNNNCTCC 2 cut(s) 73, 103
Bsc4I CCNNNNNNNGG 3 cut(s) 333, 933, 979
Bse118I RCCGGY 2 cut(s) 83, 951
Bse1I ACTGG 2 cut(s) 790, 1078
BseAI TCCGGA 1 cut(s) 349
BseBI CCWGG 4 cut(s) 129, 247, 633, 883
BseDI CCNNGG 4 cut(s) 30, 127, 882, 906
BseGI GGATG 4 cut(s) 59, 691, 758, 847
BseLI CCNNNNNNNGG 3 cut(s) 333, 933, 979
BseMII CTCAG 5 cut(s) 78, 528, 587, 689, 695
BseNI ACTGG 2 cut(s) 790, 1078
BseRI GAGGAG 1 cut(s) 749
BseXI GCAGC 2 cut(s) 104, 663
BsgI GTGCAG 2 cut(s) 638, 935
Bsh1285I CGRYCG 1 cut(s) 256
BshFI GGCC 3 cut(s) 250, 259, 757
BshNI GGYRCC 1 cut(s) 902
BshTI ACCGGT 1 cut(s) 83
BsiEI CGRYCG 1 cut(s) 256
BsiHKAI GWGCWC 2 cut(s) 224, 959
BsiSI CCGG 4 cut(s) 84, 92, 350, 952
BslI CCNNNNNNNGG 3 cut(s) 333, 933, 979
BsmAI GTCTC 1 cut(s) 801
BsmBI CGTCTC 1 cut(s) 801
BsnI GGCC 3 cut(s) 250, 259, 757
Bsp119I TTCGAA 1 cut(s) 865
Bsp1286I GDGCHC 2 cut(s) 224, 959
Bsp13I TCCGGA 1 cut(s) 349
Bsp143I GATC 3 cut(s) 253, 352, 922
BspANI GGCC 3 cut(s) 250, 259, 757
BspCNI CTCAG 5 cut(s) 77, 529, 588, 690, 694
BspEI TCCGGA 1 cut(s) 349
BspLI GGNNCC 2 cut(s) 904, 1055
BspMAI CTGCAG 1 cut(s) 772
BspPI GGATC 2 cut(s) 360, 917
BspQI GCTCTTC 1 cut(s) 212
BspT104I TTCGAA 1 cut(s) 865
BspT107I GGYRCC 1 cut(s) 902
BsrFI RCCGGY 2 cut(s) 83, 951
BsrI ACTGG 2 cut(s) 790, 1078
BssAI RCCGGY 2 cut(s) 83, 951
BssECI CCNNGG 4 cut(s) 30, 127, 882, 906
BssMI GATC 3 cut(s) 253, 352, 922
BssNI GRCGYC 2 cut(s) 35, 144
Bst2UI CCWGG 4 cut(s) 129, 247, 633, 883
Bst4CI ACNGT 1 cut(s) 158
Bst6I CTCTTC 1 cut(s) 212
BstACI GRCGYC 2 cut(s) 35, 144
BstBAI YACGTR 1 cut(s) 859
BstBI TTCGAA 1 cut(s) 865
BstC8I GCNNGC 1 cut(s) 224
BstDEI CTNAG 5 cut(s) 64, 537, 596, 681, 698
BstDSI CCRYGG 1 cut(s) 30
BstF5I GGATG 4 cut(s) 59, 691, 758, 847
BstKTI GATC 3 cut(s) 256, 355, 925
BstMAI GTCTC 1 cut(s) 801
BstMBI GATC 3 cut(s) 253, 352, 922
BstMCI CGRYCG 1 cut(s) 256
BstMWI GCNNNNNNNGC 2 cut(s) 174, 256
BstNI CCWGG 4 cut(s) 129, 247, 633, 883
BstSCI CCNGG 4 cut(s) 127, 245, 631, 881
BstSFI CTRYAG 1 cut(s) 768
BstV1I GCAGC 2 cut(s) 104, 663
BstV2I GAAGAC 2 cut(s) 108, 234
BstX2I RGATCY 2 cut(s) 352, 922
BstYI RGATCY 2 cut(s) 352, 922
BsuI GTATCC 1 cut(s) 848
BsuRI GGCC 3 cut(s) 250, 259, 757
BtgI CCRYGG 1 cut(s) 30
BtsCI GGATG 4 cut(s) 59, 691, 758, 847
BtsI GCAGTG 1 cut(s) 918
BtsIMutI CAGTG 2 cut(s) 72, 918
Cac8I GCNNGC 1 cut(s) 224
Cfr10I RCCGGY 2 cut(s) 83, 951
Cfr13I GGNCC 2 cut(s) 249, 258
CseI GACGC 4 cut(s) 24, 152, 199, 305
Csp6I GTAC 4 cut(s) 20, 87, 992, 1081
CspAI ACCGGT 1 cut(s) 83
CviAII CATG 1 cut(s) 933
CviQI GTAC 4 cut(s) 20, 87, 992, 1081
DdeI CTNAG 5 cut(s) 64, 537, 596, 681, 698
DpnI GATC 3 cut(s) 255, 354, 924
DpnII GATC 3 cut(s) 253, 352, 922
DraIII CACNNNGTG 1 cut(s) 834
Eam1104I CTCTTC 1 cut(s) 212
EarI CTCTTC 1 cut(s) 212
Ecl136II GAGCTC 1 cut(s) 222
Eco24I GRGCYC 1 cut(s) 224
Eco53kI GAGCTC 1 cut(s) 222
Eco57I CTGAAG 1 cut(s) 190
EcoICRI GAGCTC 1 cut(s) 222
EcoRII CCWGG 4 cut(s) 127, 245, 631, 881
EcoT38I GRGCYC 1 cut(s) 224
Esp3I CGTCTC 1 cut(s) 801
FaeI CATG 1 cut(s) 936
FaiI YATR 9 cut(s) 164, 166, 320, 474, 746, 748, 934, 1011, 1086
FatI CATG 1 cut(s) 932
FauNDI CATATG 1 cut(s) 746
FblI GTMKAC 1 cut(s) 53
Fnu4HI GCNGC 2 cut(s) 118, 652
FokI GGATG 4 cut(s) 46, 698, 765, 854
FriOI GRGCYC 1 cut(s) 224
Fsp4HI GCNGC 2 cut(s) 118, 652
FspBI CTAG 1 cut(s) 267
GluI GCNGC 2 cut(s) 118, 652
HaeIII GGCC 3 cut(s) 250, 259, 757
HapII CCGG 4 cut(s) 84, 92, 350, 952
HgaI GACGC 4 cut(s) 24, 152, 199, 305
Hin1I GRCGYC 2 cut(s) 35, 144
Hin1II CATG 1 cut(s) 936
HindIII AAGCTT 1 cut(s) 342
HinfI GANTC 3 cut(s) 825, 862, 937
HpaII CCGG 4 cut(s) 84, 92, 350, 952
HphI GGTGA 1 cut(s) 751
Hpy166II GTNNAC 3 cut(s) 54, 312, 704
Hpy188I TCNGA 3 cut(s) 699, 841, 967
Hpy188III TCNNGA 7 cut(s) 191, 214, 350, 683, 941, 1003, 1020
Hpy8I GTNNAC 3 cut(s) 54, 312, 704
Hpy99I CGWCG 1 cut(s) 299
HpyAV CCTTC 2 cut(s) 33, 214
HpyCH4III ACNGT 1 cut(s) 158
HpyCH4IV ACGT 2 cut(s) 858, 1089
HpyF10VI GCNNNNNNNGC 2 cut(s) 174, 256
HpyF3I CTNAG 5 cut(s) 64, 537, 596, 681, 698
HpySE526I ACGT 2 cut(s) 858, 1089
Hsp92I GRCGYC 2 cut(s) 35, 144
Hsp92II CATG 1 cut(s) 936
Kpn2I TCCGGA 1 cut(s) 349
Kzo9I GATC 3 cut(s) 253, 352, 922
LguI GCTCTTC 1 cut(s) 212
LmnI GCTCC 2 cut(s) 634, 1059
Lsp1109I GCAGC 2 cut(s) 104, 663
LweI GCATC 3 cut(s) 186, 189, 355
MaeI CTAG 1 cut(s) 267
MaeII ACGT 2 cut(s) 858, 1089
MaeIII GTNAC 2 cut(s) 826, 1090
MalI GATC 3 cut(s) 255, 354, 924
MboI GATC 3 cut(s) 253, 352, 922
MboII GAAGA 7 cut(s) 16, 33, 36, 110, 113, 229, 234
MfeI CAATTG 2 cut(s) 148, 729
MflI RGATCY 2 cut(s) 352, 922
MhlI GDGCHC 2 cut(s) 224, 959
MluCI AATT 8 cut(s) 148, 499, 646, 661, 675, 729, 874, 895
MlyI GAGTC 1 cut(s) 834
MmeI TCCRAC 3 cut(s) 422, 819, 832
MroI TCCGGA 1 cut(s) 349
MroXI GAANNNNTTC 1 cut(s) 640
MseI TTAA 2 cut(s) 1038, 1110
MspA1I CMGCKG 1 cut(s) 536
MspI CCGG 4 cut(s) 84, 92, 350, 952
MspR9I CCNGG 4 cut(s) 129, 247, 633, 883
MunI CAATTG 2 cut(s) 148, 729
MvaI CCWGG 4 cut(s) 129, 247, 633, 883
MwoI GCNNNNNNNGC 2 cut(s) 174, 256
NdeI CATATG 1 cut(s) 746
NdeII GATC 3 cut(s) 253, 352, 922
NlaIII CATG 1 cut(s) 936
NlaIV GGNNCC 2 cut(s) 904, 1055
NmeAIII GCCGAG 1 cut(s) 887
NmuCI GTSAC 1 cut(s) 826
NspV TTCGAA 1 cut(s) 865
PciSI GCTCTTC 1 cut(s) 212
PdmI GAANNNNTTC 1 cut(s) 640
PfeI GAWTC 2 cut(s) 862, 937
PflMI CCANNNNNTGG 2 cut(s) 933, 979
PfoI TCCNGGA 1 cut(s) 631
PinAI ACCGGT 1 cut(s) 83
PkrI GCNGC 2 cut(s) 119, 653
Ple19I CGATCG 1 cut(s) 256
PleI GAGTC 1 cut(s) 833
PpsI GAGTC 1 cut(s) 833
Ppu21I YACGTR 1 cut(s) 859
Psp124BI GAGCTC 1 cut(s) 224
Psp6I CCWGG 4 cut(s) 127, 245, 631, 881
PspGI CCWGG 4 cut(s) 127, 245, 631, 881
PspN4I GGNNCC 2 cut(s) 904, 1055
PspPI GGNCC 2 cut(s) 249, 258
PstI CTGCAG 1 cut(s) 772
PsuI RGATCY 2 cut(s) 352, 922
PvuI CGATCG 1 cut(s) 256
PvuII CAGCTG 1 cut(s) 536
RsaI GTAC 4 cut(s) 21, 88, 993, 1082
RsaNI GTAC 4 cut(s) 20, 87, 992, 1081
SacI GAGCTC 1 cut(s) 224
SapI GCTCTTC 1 cut(s) 212
SaqAI TTAA 2 cut(s) 1038, 1110
SatI GCNGC 2 cut(s) 118, 652
Sau3AI GATC 3 cut(s) 253, 352, 922
Sau96I GGNCC 2 cut(s) 249, 258
ScaI AGTACT 2 cut(s) 993, 1082
SchI GAGTC 1 cut(s) 834
ScrFI CCNGG 4 cut(s) 129, 247, 633, 883
SduI GDGCHC 2 cut(s) 224, 959
SfaNI GCATC 3 cut(s) 186, 189, 355
SfcI CTRYAG 1 cut(s) 768
SfiI GGCCNNNNNGGCC 1 cut(s) 256
SfuI TTCGAA 1 cut(s) 865
SgrAI CRCCGGYG 1 cut(s) 951
SmlI CTYRAG 2 cut(s) 356, 941
SmoI CTYRAG 2 cut(s) 356, 941
SpeI ACTAGT 1 cut(s) 266
Sse9I AATT 8 cut(s) 148, 499, 646, 661, 675, 729, 874, 895
SspMI CTAG 1 cut(s) 267
SstI GAGCTC 1 cut(s) 224
StyD4I CCNGG 4 cut(s) 127, 245, 631, 881
TaaI ACNGT 1 cut(s) 158
TaiI ACGT 2 cut(s) 861, 1092
TaqI TCGA 2 cut(s) 294, 865
TaqII GACCGA 3 cut(s) 120, 245, 789
TasI AATT 8 cut(s) 148, 499, 646, 661, 675, 729, 874, 895
TatI WGTACW 2 cut(s) 991, 1080
TfiI GAWTC 2 cut(s) 862, 937
Tru1I TTAA 2 cut(s) 1038, 1110
Tru9I TTAA 2 cut(s) 1038, 1110
TscAI CASTG 2 cut(s) 72, 918
TseFI GTSAC 1 cut(s) 826
TseI GCWGC 2 cut(s) 117, 651
Tsp45I GTSAC 1 cut(s) 826
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 2 cut(s) 72, 918
Van91I CCANNNNNTGG 2 cut(s) 933, 979
XapI RAATTY 1 cut(s) 874
XmiI GTMKAC 1 cut(s) 53
XmnI GAANNNNTTC 1 cut(s) 640
XspI CTAG 1 cut(s) 267
ZrmI AGTACT 2 cut(s) 993, 1082
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.