Rw4G016850

ERG2 and Sigma1 receptor like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0011384
Physical Location & Seq
Forward (+)
38258779 .. 38260449
1671 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G016850.1

Sequence Viewer

Length: 1170 bp
ATGACCATATCAAACAACAAACAGACCATCTCTCCTAAACCCCTAAGAACCCAATTCGCAACCATGAAGAAAACCGTTACCACACCGACCACGGCGTCGTCTTCATCATCCTCAGTGAAGTCAAGCAGCACAGGTCCTCCGATGGAGGAAGACCGATCCGAAAGCTGCTACTACCCAGGTTGCAGAAAAGACGCCAATTGCAATTGTGATATGTGCTTGGCCAGCATCAATGCCACTCTTGATTTGATGCCCTTTAGCGTCCAGAAGAGCTCGATGACAAAGTTCTCGTCTTCGAGGCCCGATCGGCCCAATTCTAGTGTTGAGCAGACTCCCATTTCTTTTGACGCTTCGGTTTTGTCGACCCCAATATCGACCTCTCCTCGGTTTCAAGCTTCTCCGGATCTTAAGCCCTCTGCAAGATTGGATTTTGAGCAGAGTGTGGTGGAGAAAGAGGAGGGGAGGAAATGGGGTTTTGGGTGGGATTGTTGGAAACTGGTTCTGGGTTTAAGTTTGGTTTATGTGGTGGTTTATGGGTTTTATTCTAATTTGGCTTCTGGGGTTTTGAAACCTGTTTTGTCACCTGAGATTGTGAGAAATGCTGGTGAGAAATCTTGGGTTGTGCAAGATTTGAATGGGAGGCTGAGGTTCTTGCAGAAAGAGATGCAGGGTCTTGTTCCTGGCAAGGTTTCAAATTGCAGCTATCCTAATTCTCTATGGGAAATTACTCAGGATGGTTTGCTTCTGAGTTCACATTGTAAACTGTTCAAATCTGCAATTGAAGAGGTGAGCATATGGGGATGGCCTTTGCAAACTGCAGGGTTGCTCACAACTGGGTTTTCATCTCGGTCTTACACAATCTTATCAGGCAGAGTCAAAGAGTGGTCAGATGGAAAGGTTGGCTATGTGATTCGAAAGGAAAACTCGTCTTGGGTGCAAAGGAATTGGGGTGCCTCAGCAGTGCAGTTAGATCCCAATACATGGCTTCTTGAGTATCGACGGAGTTCAGTATCTCACAACCAAAGATTGGTTTCAGCAGTACTCTCTTTCTTGAAATATAAACTTTCAAGAGCACTTGGAAAGATTAAGCAGAAGTTTTGGCTCCCCTCTACTTTTGGAAATAACCAGTACTATGAAGTTACTGCTGAATATAACATCAAGATCCCAACCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ERG2_Sigma1R

Protein Analysis

389

Amino Acids

43.46

Weight (kDa)

9.36

Isoelectric Point (pI)

43.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011384)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G05440
fragaria_vesca FvH4_4g16270
malus_domestica MD13G1194900.v1.1 MD16G1195700.v1.1
prunus_persica Prupe.1G015700_v2.0.a1
pyrus_communis pycom03g13620 pycom07g11900 pycom13g16710 pycom16g16490
rosa_chinensis RchiOBHm_Chr4g0415861
rosa_laevigata RLG00000008033
rosa_multiflora Rmu_co8517385.1_g000002 Rmu_sc0002438.1_g000006
rosa_roxburghii Rroxscaffold_5G00359720
rosa_rugosa Rorug04G0137000
rosa_samantha Rh4AG198900 Rh4BG196900 Rh4CG209800 Rh4DG196800
rosa_wichuraiana Rw4G016850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 94
AccB1I GGYRCC 1 cut(s) 947
AccB7I CCANNNNNTGG 2 cut(s) 978, 1024
AccI GTMKAC 1 cut(s) 359
AccIII TCCGGA 1 cut(s) 397
AclWI GGATC 4 cut(s) 150, 408, 962, 1153
AcoI YGGCCR 1 cut(s) 219
AcyI GRCGYC 2 cut(s) 95, 192
AfaI GTAC 2 cut(s) 1038, 1127
AfiI CCNNNNNNNGG 3 cut(s) 381, 978, 1024
AflII CTTAAG 1 cut(s) 404
AgsI TTSAA 8 cut(s) 389, 565, 631, 690, 766, 779, 1051, 1065
AjnI CCWGG 2 cut(s) 175, 676
AluBI AGCT 4 cut(s) 165, 270, 392, 699
AluI AGCT 4 cut(s) 165, 270, 392, 699
Alw21I GWGCWC 2 cut(s) 272, 1072
AlwI GGATC 4 cut(s) 150, 408, 962, 1153
Aor13HI TCCGGA 1 cut(s) 397
AoxI GGCC 4 cut(s) 219, 296, 305, 800
ApeKI GCWGC 3 cut(s) 126, 165, 696
ArsI GACNNNNNNTTYG 2 cut(s) 272, 304
AspS9I GGNCC 3 cut(s) 134, 297, 306
AsuHPI GGTGA 3 cut(s) 570, 614, 796
AsuII TTCGAA 1 cut(s) 910
AvaII GGWCC 1 cut(s) 134
BalI TGGCCA 1 cut(s) 221
BanI GGYRCC 1 cut(s) 947
BanII GRGCYC 1 cut(s) 272
BbsI GAAGAC 3 cut(s) 93, 156, 282
Bbv12I GWGCWC 2 cut(s) 272, 1072
BbvCI CCTCAGC 2 cut(s) 641, 952
BbvI GCAGC 3 cut(s) 138, 152, 708
BccI CCATC 5 cut(s) 35, 136, 725, 792, 881
BceAI ACGGC 1 cut(s) 108
BciT130I CCWGG 2 cut(s) 177, 678
BfaI CTAG 1 cut(s) 315
BfmI CTRYAG 1 cut(s) 813
BfrI CTTAAG 1 cut(s) 404
BglI GCCNNNNNGGC 1 cut(s) 304
BisI GCNGC 3 cut(s) 127, 166, 697
BlsI GCNGC 3 cut(s) 128, 167, 698
BmcAI AGTACT 2 cut(s) 1038, 1127
Bme1390I CCNGG 2 cut(s) 177, 678
Bme18I GGWCC 1 cut(s) 134
BmgT120I GGNCC 3 cut(s) 134, 297, 306
BmiI GGNNCC 2 cut(s) 949, 1100
BmrFI CCNGG 2 cut(s) 177, 678
BmrI ACTGGG 1 cut(s) 840
BmsI GCATC 3 cut(s) 234, 237, 651
BmuI ACTGGG 1 cut(s) 840
BpiI GAAGAC 3 cut(s) 93, 156, 282
Bpu10I CCTNAGC 2 cut(s) 641, 952
Bpu14I TTCGAA 1 cut(s) 910
BpuEI CTTGAG 1 cut(s) 1007
BsaHI GRCGYC 2 cut(s) 95, 192
BsaJI CCNNGG 3 cut(s) 90, 175, 380
BsaWI WCCGGW 1 cut(s) 397
BsaXI ACNNNNNCTCC 4 cut(s) 16, 46, 121, 151
Bsc4I CCNNNNNNNGG 3 cut(s) 381, 978, 1024
Bse1I ACTGG 3 cut(s) 498, 835, 1123
BseAI TCCGGA 1 cut(s) 397
BseBI CCWGG 2 cut(s) 177, 678
BseDI CCNNGG 3 cut(s) 90, 175, 380
BseGI GGATG 3 cut(s) 107, 736, 803
BseLI CCNNNNNNNGG 3 cut(s) 381, 978, 1024
BseMII CTCAG 6 cut(s) 126, 573, 632, 734, 740, 966
BseNI ACTGG 3 cut(s) 498, 835, 1123
BseRI GAGGAG 2 cut(s) 369, 467
BseXI GCAGC 3 cut(s) 138, 152, 708
BsgI GTGCAG 1 cut(s) 980
Bsh1285I CGRYCG 1 cut(s) 304
BshFI GGCC 4 cut(s) 221, 298, 307, 802
BshNI GGYRCC 1 cut(s) 947
BsiEI CGRYCG 1 cut(s) 304
BsiHKAI GWGCWC 2 cut(s) 272, 1072
BsiSI CCGG 1 cut(s) 398
BslI CCNNNNNNNGG 3 cut(s) 381, 978, 1024
BsnI GGCC 4 cut(s) 221, 298, 307, 802
Bsp119I TTCGAA 1 cut(s) 910
Bsp1286I GDGCHC 2 cut(s) 272, 1072
Bsp13I TCCGGA 1 cut(s) 397
Bsp143I GATC 5 cut(s) 155, 301, 400, 967, 1158
BspANI GGCC 4 cut(s) 221, 298, 307, 802
BspCNI CTCAG 6 cut(s) 125, 574, 633, 735, 739, 965
BspEI TCCGGA 1 cut(s) 397
BspLI GGNNCC 2 cut(s) 949, 1100
BspMAI CTGCAG 1 cut(s) 817
BspPI GGATC 4 cut(s) 150, 408, 962, 1153
BspQI GCTCTTC 1 cut(s) 260
BspT104I TTCGAA 1 cut(s) 910
BspT107I GGYRCC 1 cut(s) 947
BspTI CTTAAG 1 cut(s) 404
BsrI ACTGG 3 cut(s) 498, 835, 1123
BssECI CCNNGG 3 cut(s) 90, 175, 380
BssMI GATC 5 cut(s) 155, 301, 400, 967, 1158
BssNI GRCGYC 2 cut(s) 95, 192
Bst2UI CCWGG 2 cut(s) 177, 678
Bst4CI ACNGT 2 cut(s) 76, 762
Bst6I CTCTTC 2 cut(s) 260, 774
BstACI GRCGYC 2 cut(s) 95, 192
BstAFI CTTAAG 1 cut(s) 404
BstBI TTCGAA 1 cut(s) 910
BstC8I GCNNGC 1 cut(s) 223
BstDEI CTNAG 7 cut(s) 44, 112, 582, 641, 726, 743, 952
BstDSI CCRYGG 1 cut(s) 90
BstF5I GGATG 3 cut(s) 107, 736, 803
BstKTI GATC 5 cut(s) 158, 304, 403, 970, 1161
BstMBI GATC 5 cut(s) 155, 301, 400, 967, 1158
BstMCI CGRYCG 1 cut(s) 304
BstMWI GCNNNNNNNGC 2 cut(s) 222, 304
BstNI CCWGG 2 cut(s) 177, 678
BstSCI CCNGG 2 cut(s) 175, 676
BstSFI CTRYAG 1 cut(s) 813
BstV1I GCAGC 3 cut(s) 138, 152, 708
BstV2I GAAGAC 3 cut(s) 93, 156, 282
BstX2I RGATCY 3 cut(s) 400, 967, 1158
BstYI RGATCY 3 cut(s) 400, 967, 1158
BsuRI GGCC 4 cut(s) 221, 298, 307, 802
BtgI CCRYGG 1 cut(s) 90
BtsCI GGATG 3 cut(s) 107, 736, 803
BtsI GCAGTG 1 cut(s) 963
BtsIMutI CAGTG 2 cut(s) 120, 963
Cac8I GCNNGC 1 cut(s) 223
Cfr13I GGNCC 3 cut(s) 134, 297, 306
CseI GACGC 4 cut(s) 84, 200, 247, 353
Csp6I GTAC 2 cut(s) 1037, 1126
CviAII CATG 2 cut(s) 64, 978
CviQI GTAC 2 cut(s) 1037, 1126
DdeI CTNAG 7 cut(s) 44, 112, 582, 641, 726, 743, 952
DpnI GATC 5 cut(s) 157, 303, 402, 969, 1160
DpnII GATC 5 cut(s) 155, 301, 400, 967, 1158
DrdI GACNNNNNNGTC 1 cut(s) 94
DseDI GACNNNNNNGTC 1 cut(s) 94
EaeI YGGCCR 1 cut(s) 219
Eam1104I CTCTTC 2 cut(s) 260, 774
EarI CTCTTC 2 cut(s) 260, 774
Ecl136II GAGCTC 1 cut(s) 270
Eco24I GRGCYC 1 cut(s) 272
Eco47I GGWCC 1 cut(s) 134
Eco53kI GAGCTC 1 cut(s) 270
EcoICRI GAGCTC 1 cut(s) 270
EcoO109I RGGNCCY 1 cut(s) 134
EcoRII CCWGG 2 cut(s) 175, 676
EcoT38I GRGCYC 1 cut(s) 272
FaeI CATG 2 cut(s) 67, 981
FatI CATG 2 cut(s) 63, 977
FauNDI CATATG 1 cut(s) 791
FblI GTMKAC 1 cut(s) 359
Fnu4HI GCNGC 3 cut(s) 127, 166, 697
FokI GGATG 3 cut(s) 94, 743, 810
FriOI GRGCYC 1 cut(s) 272
Fsp4HI GCNGC 3 cut(s) 127, 166, 697
FspBI CTAG 1 cut(s) 315
GluI GCNGC 3 cut(s) 127, 166, 697
HaeIII GGCC 4 cut(s) 221, 298, 307, 802
HapII CCGG 1 cut(s) 398
HgaI GACGC 4 cut(s) 84, 200, 247, 353
Hin1I GRCGYC 2 cut(s) 95, 192
Hin1II CATG 2 cut(s) 67, 981
HincII GTYRAC 1 cut(s) 360
HindII GTYRAC 1 cut(s) 360
HindIII AAGCTT 1 cut(s) 390
HinfI GANTC 3 cut(s) 328, 870, 907
HpaII CCGG 1 cut(s) 398
HphI GGTGA 3 cut(s) 570, 614, 796
Hpy166II GTNNAC 3 cut(s) 360, 749, 758
Hpy188I TCNGA 4 cut(s) 141, 160, 744, 886
Hpy188III TCNNGA 8 cut(s) 239, 262, 398, 728, 986, 1048, 1065, 1156
Hpy8I GTNNAC 3 cut(s) 360, 749, 758
Hpy99I CGWCG 2 cut(s) 100, 999
HpyCH4III ACNGT 2 cut(s) 76, 762
HpyF10VI GCNNNNNNNGC 2 cut(s) 222, 304
HpyF3I CTNAG 7 cut(s) 44, 112, 582, 641, 726, 743, 952
Hsp92I GRCGYC 2 cut(s) 95, 192
Hsp92II CATG 2 cut(s) 67, 981
Kpn2I TCCGGA 1 cut(s) 397
Kzo9I GATC 5 cut(s) 155, 301, 400, 967, 1158
LguI GCTCTTC 1 cut(s) 260
LmnI GCTCC 1 cut(s) 1104
Lsp1109I GCAGC 3 cut(s) 138, 152, 708
LweI GCATC 3 cut(s) 234, 237, 651
MaeI CTAG 1 cut(s) 315
MaeIII GTNAC 3 cut(s) 76, 576, 1135
MalI GATC 5 cut(s) 157, 303, 402, 969, 1160
MboI GATC 5 cut(s) 155, 301, 400, 967, 1158
MboII GAAGA 6 cut(s) 79, 93, 161, 277, 282, 791
MfeI CAATTG 3 cut(s) 196, 202, 774
MflI RGATCY 3 cut(s) 400, 967, 1158
MhlI GDGCHC 2 cut(s) 272, 1072
MlsI TGGCCA 1 cut(s) 221
MluNI TGGCCA 1 cut(s) 221
MlyI GAGTC 2 cut(s) 322, 879
MmeI TCCRAC 1 cut(s) 467
Mox20I TGGCCA 1 cut(s) 221
MroI TCCGGA 1 cut(s) 397
MscI TGGCCA 1 cut(s) 221
MseI TTAA 3 cut(s) 405, 506, 1083
Msp20I TGGCCA 1 cut(s) 221
MspCI CTTAAG 1 cut(s) 404
MspI CCGG 1 cut(s) 398
MspR9I CCNGG 2 cut(s) 177, 678
MunI CAATTG 3 cut(s) 196, 202, 774
MvaI CCWGG 2 cut(s) 177, 678
MwoI GCNNNNNNNGC 2 cut(s) 222, 304
NdeI CATATG 1 cut(s) 791
NdeII GATC 5 cut(s) 155, 301, 400, 967, 1158
NlaIII CATG 2 cut(s) 67, 981
NlaIV GGNNCC 2 cut(s) 949, 1100
NmuCI GTSAC 1 cut(s) 576
NspV TTCGAA 1 cut(s) 910
PciSI GCTCTTC 1 cut(s) 260
PcsI WCGNNNNNNNCGW 1 cut(s) 356
PfeI GAWTC 1 cut(s) 907
PflMI CCANNNNNTGG 2 cut(s) 978, 1024
PkrI GCNGC 3 cut(s) 128, 167, 698
Ple19I CGATCG 1 cut(s) 304
PleI GAGTC 2 cut(s) 322, 878
PpsI GAGTC 2 cut(s) 322, 878
PpuMI RGGWCCY 1 cut(s) 134
Psp124BI GAGCTC 1 cut(s) 272
Psp5II RGGWCCY 1 cut(s) 134
Psp6I CCWGG 2 cut(s) 175, 676
PspGI CCWGG 2 cut(s) 175, 676
PspN4I GGNNCC 2 cut(s) 949, 1100
PspPI GGNCC 3 cut(s) 134, 297, 306
PspPPI RGGWCCY 1 cut(s) 134
PstI CTGCAG 1 cut(s) 817
PsuI RGATCY 3 cut(s) 400, 967, 1158
PvuI CGATCG 1 cut(s) 304
RsaI GTAC 2 cut(s) 1038, 1127
RsaNI GTAC 2 cut(s) 1037, 1126
SacI GAGCTC 1 cut(s) 272
SalI GTCGAC 1 cut(s) 358
SapI GCTCTTC 1 cut(s) 260
SaqAI TTAA 3 cut(s) 405, 506, 1083
SatI GCNGC 3 cut(s) 127, 166, 697
Sau3AI GATC 5 cut(s) 155, 301, 400, 967, 1158
Sau96I GGNCC 3 cut(s) 134, 297, 306
ScaI AGTACT 2 cut(s) 1038, 1127
SchI GAGTC 2 cut(s) 322, 879
ScrFI CCNGG 2 cut(s) 177, 678
SduI GDGCHC 2 cut(s) 272, 1072
SfaNI GCATC 3 cut(s) 234, 237, 651
SfcI CTRYAG 1 cut(s) 813
SfiI GGCCNNNNNGGCC 1 cut(s) 304
SfuI TTCGAA 1 cut(s) 910
SinI GGWCC 1 cut(s) 134
SmlI CTYRAG 2 cut(s) 404, 986
SmoI CTYRAG 2 cut(s) 404, 986
SspMI CTAG 1 cut(s) 315
SstI GAGCTC 1 cut(s) 272
StyD4I CCNGG 2 cut(s) 175, 676
TaaI ACNGT 2 cut(s) 76, 762
TaqI TCGA 6 cut(s) 272, 293, 359, 371, 910, 994
TaqII GACCGA 2 cut(s) 168, 834
TatI WGTACW 2 cut(s) 1036, 1125
TfiI GAWTC 1 cut(s) 907
Tru1I TTAA 3 cut(s) 405, 506, 1083
Tru9I TTAA 3 cut(s) 405, 506, 1083
TscAI CASTG 2 cut(s) 120, 963
TseFI GTSAC 1 cut(s) 576
TseI GCWGC 3 cut(s) 126, 165, 696
Tsp45I GTSAC 1 cut(s) 576
TspDTI ATGAA 4 cut(s) 80, 93, 828, 1146
TspGWI ACGGA 1 cut(s) 1012
TspRI CASTG 2 cut(s) 120, 963
Van91I CCANNNNNTGG 2 cut(s) 978, 1024
Vha464I CTTAAG 1 cut(s) 404
VpaK11BI GGWCC 1 cut(s) 134
XmiI GTMKAC 1 cut(s) 359
XspI CTAG 1 cut(s) 315
ZrmI AGTACT 2 cut(s) 1038, 1127
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.