Rh4CG209800

ERG2 and Sigma1 receptor like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0011384
Physical Location & Seq
Forward (+)
43928346 .. 43929677
1332 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG209800.1

Sequence Viewer

Length: 1116 bp
ATGAAGAAAACCGTTACCACACCGACCACGGTGTCGTCGGCGTCGTCTTCATCATCCTCAGTGAAGTCAAGCAGCACAGGTCCTCTGATGGAGGAAGACCGATCCGAAAGCTGCTACTACCCAGGTTGCAGAAAAGACGCCAATTGCAACTGTGATATGTGCTTGGCCAGCATCAATGCCACTCTTGATTTGATGCCCTTTAGCGTCCAGAAGAGCTCGATGACAAAGTTCTCGTCTTCGAGGCCCGATCGGCCCAATTCTAGTGTTGAGCAGACTCCCATTTCTTTTGACGCTTCGGTTTTGTCGACCCCAATATCGACCTCTCCTCGGTTTCAAGCTTCTCCGGATCTTAAGCGCTCTGCAAGATTGGATTTTGAGCAGAGTGTGGTGGAGAAAGAGGAGGGGAGGAAATGGGGTTTTGGGTGGGATTGTTGGAAACTGGTTCTGGGTTTAAGTTTGGTTTATGTGGTGGTTTATGGGTTTTATTCTAATTTGGCTTCTGGGGTTTTGAAACCTGTTTTGTCACCTGAGATTGTGAGAAATGCTGGTGAGAAATCTTGGGTTGTGCAAGATTTGAATGGGAGGCTGAGGTTCTTGCAGAAAGAGATGCAGGGTCTTGTTCCTGGCAAGGTTTCAAATTGCAGCTATCCTAATTCTCTTTGGGAAATTACTCAGGATGGTTTGCTTCTGAGTTCACATTGTCAACTGTTCAAATCTGCAATTGAAGAGGTGAGCATATGGGGATGGCCTTTGCAGACTGCAGGGTTGCTCACAACTGGGTTTTCGTCTCGGTCTTACACAATCTTATCAGGCAGAGTCACAGAGTGGTCAGATGGAAAGGTTGGCTATGTGATTCGAAAGGAAAACTCATCTTGGGTGCAAAGGAATTGGGGTGCCTCAGCAGTGCAGTTAGATCCCAATACATGGCTTCTTGAGTATCGACGGAGTTCAGTATCTCACAACCAAAGATTGGTTTCAGCAGTACTCTCTTTCTTGAAATATAAACTTTCAAGAGCACTTGGAAAGATTAAGCAGAAGTTTTGGCTCCCCTCTACTTTTGGAAATAACCAGTACTATGAAGTTACTGCTGAATATAACATCAAGATCCCAACCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ERG2_Sigma1R

Protein Analysis

371

Amino Acids

41.42

Weight (kDa)

9.14

Isoelectric Point (pI)

45.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011384)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G05440
fragaria_vesca FvH4_4g16270
malus_domestica MD13G1194900.v1.1 MD16G1195700.v1.1
prunus_persica Prupe.1G015700_v2.0.a1
pyrus_communis pycom03g13620 pycom07g11900 pycom13g16710 pycom16g16490
rosa_chinensis RchiOBHm_Chr4g0415861
rosa_laevigata RLG00000008033
rosa_multiflora Rmu_co8517385.1_g000002 Rmu_sc0002438.1_g000006
rosa_roxburghii Rroxscaffold_5G00359720
rosa_rugosa Rorug04G0137000
rosa_samantha Rh4AG198900 Rh4BG196900 Rh4CG209800 Rh4DG196800
rosa_wichuraiana Rw4G016850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 31
AccB1I GGYRCC 1 cut(s) 893
AccB7I CCANNNNNTGG 2 cut(s) 924, 970
AccI GTMKAC 1 cut(s) 305
AccIII TCCGGA 1 cut(s) 343
AclWI GGATC 4 cut(s) 96, 354, 908, 1099
AcoI YGGCCR 1 cut(s) 165
AcyI GRCGYC 2 cut(s) 41, 138
AdeI CACNNNGTG 1 cut(s) 825
AfaI GTAC 2 cut(s) 984, 1073
AfeI AGCGCT 1 cut(s) 356
AfiI CCNNNNNNNGG 3 cut(s) 327, 924, 970
AflII CTTAAG 1 cut(s) 350
AgsI TTSAA 8 cut(s) 335, 511, 577, 636, 712, 725, 997, 1011
AjnI CCWGG 2 cut(s) 121, 622
AluBI AGCT 4 cut(s) 111, 216, 338, 645
AluI AGCT 4 cut(s) 111, 216, 338, 645
Alw21I GWGCWC 2 cut(s) 218, 1018
Alw26I GTCTC 1 cut(s) 792
AlwI GGATC 4 cut(s) 96, 354, 908, 1099
Aor13HI TCCGGA 1 cut(s) 343
Aor51HI AGCGCT 1 cut(s) 356
AoxI GGCC 4 cut(s) 165, 242, 251, 746
ApeKI GCWGC 3 cut(s) 72, 111, 642
ArsI GACNNNNNNTTYG 2 cut(s) 218, 250
AspLEI GCGC 1 cut(s) 357
AspS9I GGNCC 3 cut(s) 80, 243, 252
AsuHPI GGTGA 3 cut(s) 516, 560, 742
AsuII TTCGAA 1 cut(s) 856
AvaII GGWCC 1 cut(s) 80
BalI TGGCCA 1 cut(s) 167
BanI GGYRCC 1 cut(s) 893
BanII GRGCYC 1 cut(s) 218
BbsI GAAGAC 3 cut(s) 39, 102, 228
Bbv12I GWGCWC 2 cut(s) 218, 1018
BbvCI CCTCAGC 2 cut(s) 587, 898
BbvI GCAGC 3 cut(s) 84, 98, 654
BccI CCATC 4 cut(s) 82, 671, 738, 827
BciT130I CCWGG 2 cut(s) 123, 624
BcoDI GTCTC 1 cut(s) 792
BfaI CTAG 1 cut(s) 261
BfmI CTRYAG 1 cut(s) 759
BfoI RGCGCY 1 cut(s) 358
BfrI CTTAAG 1 cut(s) 350
BglI GCCNNNNNGGC 1 cut(s) 250
BisI GCNGC 3 cut(s) 73, 112, 643
BlsI GCNGC 3 cut(s) 74, 113, 644
BmcAI AGTACT 2 cut(s) 984, 1073
Bme1390I CCNGG 2 cut(s) 123, 624
Bme18I GGWCC 1 cut(s) 80
BmgT120I GGNCC 3 cut(s) 80, 243, 252
BmiI GGNNCC 2 cut(s) 895, 1046
BmrFI CCNGG 2 cut(s) 123, 624
BmrI ACTGGG 1 cut(s) 786
BmsI GCATC 3 cut(s) 180, 183, 597
BmuI ACTGGG 1 cut(s) 786
BpiI GAAGAC 3 cut(s) 39, 102, 228
Bpu10I CCTNAGC 2 cut(s) 587, 898
Bpu14I TTCGAA 1 cut(s) 856
BpuEI CTTGAG 1 cut(s) 953
BsaHI GRCGYC 2 cut(s) 41, 138
BsaJI CCNNGG 3 cut(s) 27, 121, 326
BsaWI WCCGGW 1 cut(s) 343
Bsc4I CCNNNNNNNGG 3 cut(s) 327, 924, 970
Bse1I ACTGG 3 cut(s) 444, 781, 1069
BseAI TCCGGA 1 cut(s) 343
BseBI CCWGG 2 cut(s) 123, 624
BseDI CCNNGG 3 cut(s) 27, 121, 326
BseGI GGATG 3 cut(s) 53, 682, 749
BseLI CCNNNNNNNGG 3 cut(s) 327, 924, 970
BseMII CTCAG 6 cut(s) 72, 519, 578, 680, 686, 912
BseNI ACTGG 3 cut(s) 444, 781, 1069
BseRI GAGGAG 2 cut(s) 315, 413
BseXI GCAGC 3 cut(s) 84, 98, 654
BsgI GTGCAG 1 cut(s) 926
Bsh1285I CGRYCG 1 cut(s) 250
BshFI GGCC 4 cut(s) 167, 244, 253, 748
BshNI GGYRCC 1 cut(s) 893
BsiEI CGRYCG 1 cut(s) 250
BsiHKAI GWGCWC 2 cut(s) 218, 1018
BsiSI CCGG 1 cut(s) 344
BslI CCNNNNNNNGG 3 cut(s) 327, 924, 970
BsmAI GTCTC 1 cut(s) 792
BsmBI CGTCTC 1 cut(s) 792
BsnI GGCC 4 cut(s) 167, 244, 253, 748
Bsp119I TTCGAA 1 cut(s) 856
Bsp1286I GDGCHC 2 cut(s) 218, 1018
Bsp13I TCCGGA 1 cut(s) 343
Bsp143I GATC 5 cut(s) 101, 247, 346, 913, 1104
BspANI GGCC 4 cut(s) 167, 244, 253, 748
BspCNI CTCAG 6 cut(s) 71, 520, 579, 681, 685, 911
BspEI TCCGGA 1 cut(s) 343
BspLI GGNNCC 2 cut(s) 895, 1046
BspMAI CTGCAG 1 cut(s) 763
BspPI GGATC 4 cut(s) 96, 354, 908, 1099
BspQI GCTCTTC 1 cut(s) 206
BspT104I TTCGAA 1 cut(s) 856
BspT107I GGYRCC 1 cut(s) 893
BspTI CTTAAG 1 cut(s) 350
BsrI ACTGG 3 cut(s) 444, 781, 1069
BssECI CCNNGG 3 cut(s) 27, 121, 326
BssMI GATC 5 cut(s) 101, 247, 346, 913, 1104
BssNI GRCGYC 2 cut(s) 41, 138
Bst2UI CCWGG 2 cut(s) 123, 624
Bst4CI ACNGT 4 cut(s) 13, 31, 152, 708
Bst6I CTCTTC 2 cut(s) 206, 720
BstACI GRCGYC 2 cut(s) 41, 138
BstAFI CTTAAG 1 cut(s) 350
BstBI TTCGAA 1 cut(s) 856
BstC8I GCNNGC 1 cut(s) 169
BstDEI CTNAG 6 cut(s) 58, 528, 587, 672, 689, 898
BstDSI CCRYGG 1 cut(s) 27
BstF5I GGATG 3 cut(s) 53, 682, 749
BstH2I RGCGCY 1 cut(s) 358
BstHHI GCGC 1 cut(s) 357
BstKTI GATC 5 cut(s) 104, 250, 349, 916, 1107
BstMAI GTCTC 1 cut(s) 792
BstMBI GATC 5 cut(s) 101, 247, 346, 913, 1104
BstMCI CGRYCG 1 cut(s) 250
BstMWI GCNNNNNNNGC 2 cut(s) 168, 250
BstNI CCWGG 2 cut(s) 123, 624
BstSCI CCNGG 2 cut(s) 121, 622
BstSFI CTRYAG 1 cut(s) 759
BstV1I GCAGC 3 cut(s) 84, 98, 654
BstV2I GAAGAC 3 cut(s) 39, 102, 228
BstX2I RGATCY 3 cut(s) 346, 913, 1104
BstYI RGATCY 3 cut(s) 346, 913, 1104
BsuRI GGCC 4 cut(s) 167, 244, 253, 748
BtgI CCRYGG 1 cut(s) 27
BtsCI GGATG 3 cut(s) 53, 682, 749
BtsI GCAGTG 1 cut(s) 909
BtsIMutI CAGTG 2 cut(s) 66, 909
Cac8I GCNNGC 1 cut(s) 169
CfoI GCGC 1 cut(s) 357
Cfr13I GGNCC 3 cut(s) 80, 243, 252
CseI GACGC 4 cut(s) 30, 146, 193, 299
Csp6I GTAC 2 cut(s) 983, 1072
CviAII CATG 1 cut(s) 924
CviQI GTAC 2 cut(s) 983, 1072
DdeI CTNAG 6 cut(s) 58, 528, 587, 672, 689, 898
DpnI GATC 5 cut(s) 103, 249, 348, 915, 1106
DpnII GATC 5 cut(s) 101, 247, 346, 913, 1104
DraIII CACNNNGTG 1 cut(s) 825
DrdI GACNNNNNNGTC 1 cut(s) 31
DseDI GACNNNNNNGTC 1 cut(s) 31
EaeI YGGCCR 1 cut(s) 165
Eam1104I CTCTTC 2 cut(s) 206, 720
EarI CTCTTC 2 cut(s) 206, 720
Ecl136II GAGCTC 1 cut(s) 216
Eco24I GRGCYC 1 cut(s) 218
Eco47I GGWCC 1 cut(s) 80
Eco47III AGCGCT 1 cut(s) 356
Eco53kI GAGCTC 1 cut(s) 216
EcoICRI GAGCTC 1 cut(s) 216
EcoO109I RGGNCCY 1 cut(s) 80
EcoRII CCWGG 2 cut(s) 121, 622
EcoT38I GRGCYC 1 cut(s) 218
Esp3I CGTCTC 1 cut(s) 792
FaeI CATG 1 cut(s) 927
FatI CATG 1 cut(s) 923
FauNDI CATATG 1 cut(s) 737
FblI GTMKAC 1 cut(s) 305
Fnu4HI GCNGC 3 cut(s) 73, 112, 643
FokI GGATG 3 cut(s) 40, 689, 756
FriOI GRGCYC 1 cut(s) 218
Fsp4HI GCNGC 3 cut(s) 73, 112, 643
FspBI CTAG 1 cut(s) 261
GlaI GCGC 1 cut(s) 356
GluI GCNGC 3 cut(s) 73, 112, 643
HaeII RGCGCY 1 cut(s) 358
HaeIII GGCC 4 cut(s) 167, 244, 253, 748
HapII CCGG 1 cut(s) 344
HgaI GACGC 4 cut(s) 30, 146, 193, 299
HhaI GCGC 1 cut(s) 357
Hin1I GRCGYC 2 cut(s) 41, 138
Hin1II CATG 1 cut(s) 927
Hin6I GCGC 1 cut(s) 355
HinP1I GCGC 1 cut(s) 355
HincII GTYRAC 2 cut(s) 306, 704
HindII GTYRAC 2 cut(s) 306, 704
HindIII AAGCTT 1 cut(s) 336
HinfI GANTC 3 cut(s) 274, 816, 853
HpaII CCGG 1 cut(s) 344
HphI GGTGA 3 cut(s) 516, 560, 742
Hpy166II GTNNAC 3 cut(s) 306, 695, 704
Hpy188I TCNGA 4 cut(s) 87, 106, 690, 832
Hpy188III TCNNGA 8 cut(s) 185, 208, 344, 674, 932, 994, 1011, 1102
Hpy8I GTNNAC 3 cut(s) 306, 695, 704
Hpy99I CGWCG 3 cut(s) 40, 46, 945
HpyCH4III ACNGT 4 cut(s) 13, 31, 152, 708
HpyF10VI GCNNNNNNNGC 2 cut(s) 168, 250
HpyF3I CTNAG 6 cut(s) 58, 528, 587, 672, 689, 898
Hsp92I GRCGYC 2 cut(s) 41, 138
Hsp92II CATG 1 cut(s) 927
HspAI GCGC 1 cut(s) 355
Kpn2I TCCGGA 1 cut(s) 343
Kzo9I GATC 5 cut(s) 101, 247, 346, 913, 1104
LguI GCTCTTC 1 cut(s) 206
LmnI GCTCC 1 cut(s) 1050
Lsp1109I GCAGC 3 cut(s) 84, 98, 654
LweI GCATC 3 cut(s) 180, 183, 597
MaeI CTAG 1 cut(s) 261
MaeIII GTNAC 4 cut(s) 13, 522, 817, 1081
MalI GATC 5 cut(s) 103, 249, 348, 915, 1106
MboI GATC 5 cut(s) 101, 247, 346, 913, 1104
MboII GAAGA 6 cut(s) 16, 39, 107, 223, 228, 737
MfeI CAATTG 2 cut(s) 142, 720
MflI RGATCY 3 cut(s) 346, 913, 1104
MhlI GDGCHC 2 cut(s) 218, 1018
MlsI TGGCCA 1 cut(s) 167
MluCI AATT 8 cut(s) 142, 256, 490, 637, 652, 666, 720, 886
MluNI TGGCCA 1 cut(s) 167
MlyI GAGTC 2 cut(s) 268, 825
MmeI TCCRAC 1 cut(s) 413
Mox20I TGGCCA 1 cut(s) 167
MroI TCCGGA 1 cut(s) 343
MscI TGGCCA 1 cut(s) 167
MseI TTAA 3 cut(s) 351, 452, 1029
Msp20I TGGCCA 1 cut(s) 167
MspCI CTTAAG 1 cut(s) 350
MspI CCGG 1 cut(s) 344
MspR9I CCNGG 2 cut(s) 123, 624
MunI CAATTG 2 cut(s) 142, 720
MvaI CCWGG 2 cut(s) 123, 624
MwoI GCNNNNNNNGC 2 cut(s) 168, 250
NdeI CATATG 1 cut(s) 737
NdeII GATC 5 cut(s) 101, 247, 346, 913, 1104
NlaIII CATG 1 cut(s) 927
NlaIV GGNNCC 2 cut(s) 895, 1046
NmuCI GTSAC 2 cut(s) 522, 817
NspV TTCGAA 1 cut(s) 856
PciSI GCTCTTC 1 cut(s) 206
PcsI WCGNNNNNNNCGW 2 cut(s) 41, 302
PfeI GAWTC 1 cut(s) 853
PflMI CCANNNNNTGG 2 cut(s) 924, 970
PkrI GCNGC 3 cut(s) 74, 113, 644
Ple19I CGATCG 1 cut(s) 250
PleI GAGTC 2 cut(s) 268, 824
PpsI GAGTC 2 cut(s) 268, 824
PpuMI RGGWCCY 1 cut(s) 80
Psp124BI GAGCTC 1 cut(s) 218
Psp5II RGGWCCY 1 cut(s) 80
Psp6I CCWGG 2 cut(s) 121, 622
PspGI CCWGG 2 cut(s) 121, 622
PspN4I GGNNCC 2 cut(s) 895, 1046
PspPI GGNCC 3 cut(s) 80, 243, 252
PspPPI RGGWCCY 1 cut(s) 80
PstI CTGCAG 1 cut(s) 763
PsuI RGATCY 3 cut(s) 346, 913, 1104
PvuI CGATCG 1 cut(s) 250
RsaI GTAC 2 cut(s) 984, 1073
RsaNI GTAC 2 cut(s) 983, 1072
SacI GAGCTC 1 cut(s) 218
SalI GTCGAC 1 cut(s) 304
SapI GCTCTTC 1 cut(s) 206
SaqAI TTAA 3 cut(s) 351, 452, 1029
SatI GCNGC 3 cut(s) 73, 112, 643
Sau3AI GATC 5 cut(s) 101, 247, 346, 913, 1104
Sau96I GGNCC 3 cut(s) 80, 243, 252
ScaI AGTACT 2 cut(s) 984, 1073
SchI GAGTC 2 cut(s) 268, 825
ScrFI CCNGG 2 cut(s) 123, 624
SduI GDGCHC 2 cut(s) 218, 1018
SfaNI GCATC 3 cut(s) 180, 183, 597
SfcI CTRYAG 1 cut(s) 759
SfiI GGCCNNNNNGGCC 1 cut(s) 250
SfuI TTCGAA 1 cut(s) 856
SinI GGWCC 1 cut(s) 80
SmlI CTYRAG 2 cut(s) 350, 932
SmoI CTYRAG 2 cut(s) 350, 932
Sse9I AATT 8 cut(s) 142, 256, 490, 637, 652, 666, 720, 886
SspMI CTAG 1 cut(s) 261
SstI GAGCTC 1 cut(s) 218
StyD4I CCNGG 2 cut(s) 121, 622
TaaI ACNGT 4 cut(s) 13, 31, 152, 708
TaqI TCGA 6 cut(s) 218, 239, 305, 317, 856, 940
TaqII GACCGA 2 cut(s) 114, 780
TasI AATT 8 cut(s) 142, 256, 490, 637, 652, 666, 720, 886
TatI WGTACW 2 cut(s) 982, 1071
TfiI GAWTC 1 cut(s) 853
Tru1I TTAA 3 cut(s) 351, 452, 1029
Tru9I TTAA 3 cut(s) 351, 452, 1029
TscAI CASTG 2 cut(s) 66, 909
TseFI GTSAC 2 cut(s) 522, 817
TseI GCWGC 3 cut(s) 72, 111, 642
Tsp45I GTSAC 2 cut(s) 522, 817
TspDTI ATGAA 3 cut(s) 17, 39, 1092
TspGWI ACGGA 1 cut(s) 958
TspRI CASTG 2 cut(s) 66, 909
Van91I CCANNNNNTGG 2 cut(s) 924, 970
Vha464I CTTAAG 1 cut(s) 350
VpaK11BI GGWCC 1 cut(s) 80
XmiI GTMKAC 1 cut(s) 305
XspI CTAG 1 cut(s) 261
ZrmI AGTACT 2 cut(s) 984, 1073
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.