Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0011384

Physical Location & Seq

Genomic Coordinates Forward (+)

13194633 .. 13196564

Gene Structure 1932 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g11900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGGACGACGACAGATCTGAAAACCGCGACAGCTGCTACTACCCAGGATGCCGGAAAGATGCCAACTGCAACTGCGAAATGTGCTTGGCCAGCATCAATGCCACTCTCGATCTCATGCCTTTTAGCATCCAGAAAAGCCCGCTCACCAAATTATCATCTTCACGGCCTAAGAACAACCCAAGTGTTGAACGCACCCCCATCTCTTTCGATGCTTCGATTTTGTCCACACCCACGTCGGGCTCTCCCCCGATTCCTGTGTCCCTGGAGCTTAAACCGGCTGCAAGATTGAAATCGAAGAAGAAGACTAAGAAGATGGAGAGAAAATGGGGTTTTGGGTGGTTTCGAATTGCAGCTATCCTAGTTCTATATGGGACATTAGTCAGAATGAGTCAATCGAACATACAACGTAGTGAGGAGTGCAATCTTGCTGCCAATTTGCTAAACCAAGACTATCTACACCAAATCAGAACATTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ERG2_Sigma1R

Protein Analysis

159

Amino Acids

17.81

Weight (kDa)

9.34

Isoelectric Point (pI)

60.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011384)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05440
fragaria_vesca	FvH4_4g16270
malus_domestica	MD13G1194900.v1.1 MD16G1195700.v1.1
prunus_persica	Prupe.1G015700_v2.0.a1
pyrus_communis	pycom03g13620 pycom07g11900 pycom13g16710 pycom16g16490
rosa_chinensis	RchiOBHm_Chr4g0415861
rosa_laevigata	RLG00000008033
rosa_multiflora	Rmu_co8517385.1_g000002 Rmu_sc0002438.1_g000006
rosa_roxburghii	Rroxscaffold_5G00359720
rosa_rugosa	Rorug04G0137000
rosa_samantha	Rh4AG198900 Rh4BG196900 Rh4CG209800 Rh4DG196800
rosa_wichuraiana	Rw4G016850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	142
AccII	CGCG	1 cut(s)	27
AciI	CCGC	2 cut(s)	25, 140
AcoI	YGGCCR	1 cut(s)	87
AfiI	CCNNNNNNNGG	1 cut(s)	236
AgsI	TTSAA	2 cut(s)	188, 289
AjiI	CACGTC	1 cut(s)	234
AjnI	CCWGG	2 cut(s)	43, 261
AluBI	AGCT	3 cut(s)	33, 268, 353
AluI	AGCT	3 cut(s)	33, 268, 353
AoxI	GGCC	2 cut(s)	87, 164
ApeKI	GCWGC	4 cut(s)	33, 278, 350, 428
AsuHPI	GGTGA	1 cut(s)	136
AsuII	TTCGAA	1 cut(s)	343
BalI	TGGCCA	1 cut(s)	89
BanII	GRGCYC	1 cut(s)	242
BbsI	GAAGAC	1 cut(s)	308
BbvI	GCAGC	4 cut(s)	20, 265, 362, 415
BccI	CCATC	2 cut(s)	206, 307
BceAI	ACGGC	1 cut(s)	179
BciT130I	CCWGG	2 cut(s)	45, 263
BfaI	CTAG	1 cut(s)	359
BglII	AGATCT	1 cut(s)	14
BisI	GCNGC	4 cut(s)	34, 279, 351, 429
BlsI	GCNGC	4 cut(s)	35, 280, 352, 430
Bme1390I	CCNGG	2 cut(s)	45, 263
BmgBI	CACGTC	1 cut(s)	234
BmrFI	CCNGG	2 cut(s)	45, 263
BmsI	GCATC	5 cut(s)	38, 49, 102, 135, 199
BoxI	GACNNNNGTC	1 cut(s)	377
BpiI	GAAGAC	1 cut(s)	308
BpmI	CTGGAG	1 cut(s)	284
Bpu14I	TTCGAA	1 cut(s)	343
BsaBI	GATNNNNATC	1 cut(s)	289
BsaJI	CCNNGG	2 cut(s)	43, 261
Bsc4I	CCNNNNNNNGG	1 cut(s)	236
Bse118I	RCCGGY	1 cut(s)	274
Bse8I	GATNNNNATC	1 cut(s)	289
BseBI	CCWGG	2 cut(s)	45, 263
BseDI	CCNNGG	2 cut(s)	43, 261
BseGI	GGATG	2 cut(s)	53, 126
BseJI	GATNNNNATC	1 cut(s)	289
BseLI	CCNNNNNNNGG	1 cut(s)	236
BseRI	GAGGAG	1 cut(s)	428
BseXI	GCAGC	4 cut(s)	20, 265, 362, 415
Bsh1236I	CGCG	1 cut(s)	27
BshFI	GGCC	2 cut(s)	89, 166
BsiSI	CCGG	2 cut(s)	52, 275
BslFI	GGGAC	2 cut(s)	244, 385
BslI	CCNNNNNNNGG	1 cut(s)	236
BsmFI	GGGAC	2 cut(s)	244, 385
BsnI	GGCC	2 cut(s)	89, 166
Bsp119I	TTCGAA	1 cut(s)	343
Bsp1286I	GDGCHC	1 cut(s)	242
Bsp143I	GATC	2 cut(s)	14, 109
BspACI	CCGC	2 cut(s)	25, 140
BspANI	GGCC	2 cut(s)	89, 166
BspFNI	CGCG	1 cut(s)	27
BspT104I	TTCGAA	1 cut(s)	343
BsrBI	CCGCTC	1 cut(s)	142
BsrFI	RCCGGY	1 cut(s)	274
BssAI	RCCGGY	1 cut(s)	274
BssECI	CCNNGG	2 cut(s)	43, 261
BssMI	GATC	2 cut(s)	14, 109
Bst2UI	CCWGG	2 cut(s)	45, 263
BstBI	TTCGAA	1 cut(s)	343
BstC8I	GCNNGC	2 cut(s)	91, 140
BstDEI	CTNAG	2 cut(s)	168, 306
BstF5I	GGATG	2 cut(s)	53, 126
BstFNI	CGCG	1 cut(s)	27
BstKTI	GATC	2 cut(s)	17, 112
BstMBI	GATC	2 cut(s)	14, 109
BstMWI	GCNNNNNNNGC	3 cut(s)	33, 81, 90
BstNI	CCWGG	2 cut(s)	45, 263
BstPAI	GACNNNNGTC	1 cut(s)	377
BstSCI	CCNGG	2 cut(s)	43, 261
BstUI	CGCG	1 cut(s)	27
BstV1I	GCAGC	4 cut(s)	20, 265, 362, 415
BstV2I	GAAGAC	1 cut(s)	308
BstX2I	RGATCY	1 cut(s)	14
BstYI	RGATCY	1 cut(s)	14
BsuRI	GGCC	2 cut(s)	89, 166
BtrI	CACGTC	1 cut(s)	234
BtsCI	GGATG	2 cut(s)	53, 126
Cac8I	GCNNGC	2 cut(s)	91, 140
Cfr10I	RCCGGY	1 cut(s)	274
CviAII	CATG	1 cut(s)	115
CviJI	RGCY	8 cut(s)	33, 89, 138, 166, 240, 268, 278, 353
CviKI_1	RGCY	8 cut(s)	33, 89, 138, 166, 240, 268, 278, 353
DdeI	CTNAG	2 cut(s)	168, 306
DpnI	GATC	2 cut(s)	16, 111
DpnII	GATC	2 cut(s)	14, 109
EaeI	YGGCCR	1 cut(s)	87
Eco24I	GRGCYC	1 cut(s)	242
EcoRII	CCWGG	2 cut(s)	43, 261
EcoT38I	GRGCYC	1 cut(s)	242
FaeI	CATG	1 cut(s)	118
FaiI	YATR	4 cut(s)	116, 367, 369, 401
FaqI	GGGAC	2 cut(s)	244, 385
FatI	CATG	1 cut(s)	114
FauI	CCCGC	1 cut(s)	147
Fnu4HI	GCNGC	4 cut(s)	34, 279, 351, 429
FokI	GGATG	2 cut(s)	60, 113
FriOI	GRGCYC	1 cut(s)	242
Fsp4HI	GCNGC	4 cut(s)	34, 279, 351, 429
FspBI	CTAG	1 cut(s)	359
GluI	GCNGC	4 cut(s)	34, 279, 351, 429
GsuI	CTGGAG	1 cut(s)	284
HaeIII	GGCC	2 cut(s)	89, 166
HapII	CCGG	2 cut(s)	52, 275
Hin1II	CATG	1 cut(s)	118
HinfI	GANTC	2 cut(s)	250, 388
HpaII	CCGG	2 cut(s)	52, 275
HphI	GGTGA	1 cut(s)	136
Hpy166II	GTNNAC	1 cut(s)	225
Hpy188I	TCNGA	3 cut(s)	19, 383, 467
Hpy188III	TCNNGA	2 cut(s)	107, 130
Hpy8I	GTNNAC	1 cut(s)	225
Hpy99I	CGWCG	2 cut(s)	11, 238
HpyCH4IV	ACGT	2 cut(s)	233, 406
HpyCH4V	TGCA	4 cut(s)	69, 281, 350, 420
HpyF10VI	GCNNNNNNNGC	3 cut(s)	33, 81, 90
HpyF3I	CTNAG	2 cut(s)	168, 306
HpySE526I	ACGT	2 cut(s)	233, 406
Hsp92II	CATG	1 cut(s)	118
Kzo9I	GATC	2 cut(s)	14, 109
LmnI	GCTCC	1 cut(s)	265
LpnPI	CCDG	9 cut(s)	30, 57, 65, 103, 143, 248, 267, 275, 288
Lsp1109I	GCAGC	4 cut(s)	20, 265, 362, 415
LweI	GCATC	5 cut(s)	38, 49, 102, 135, 199
MaeI	CTAG	1 cut(s)	359
MaeII	ACGT	2 cut(s)	233, 406
MalI	GATC	2 cut(s)	16, 111
MbiI	CCGCTC	1 cut(s)	142
MboI	GATC	2 cut(s)	14, 109
MboII	GAAGA	5 cut(s)	150, 307, 310, 313, 322
MflI	RGATCY	1 cut(s)	14
MhlI	GDGCHC	1 cut(s)	242
MlsI	TGGCCA	1 cut(s)	89
MluCI	AATT	3 cut(s)	149, 345, 433
MluNI	TGGCCA	1 cut(s)	89
MlyI	GAGTC	1 cut(s)	397
MnlI	CCTC	1 cut(s)	406
Mox20I	TGGCCA	1 cut(s)	89
MscI	TGGCCA	1 cut(s)	89
MseI	TTAA	2 cut(s)	270, 475
Msp20I	TGGCCA	1 cut(s)	89
MspA1I	CMGCKG	1 cut(s)	33
MspI	CCGG	2 cut(s)	52, 275
MspR9I	CCNGG	2 cut(s)	45, 263
MvaI	CCWGG	2 cut(s)	45, 263
MvnI	CGCG	1 cut(s)	27
MwoI	GCNNNNNNNGC	3 cut(s)	33, 81, 90
NdeII	GATC	2 cut(s)	14, 109
NlaIII	CATG	1 cut(s)	118
NspV	TTCGAA	1 cut(s)	343
PfeI	GAWTC	1 cut(s)	250
PkrI	GCNGC	4 cut(s)	35, 280, 352, 430
PleI	GAGTC	1 cut(s)	396
PpsI	GAGTC	1 cut(s)	396
PshAI	GACNNNNGTC	1 cut(s)	377
Psp6I	CCWGG	2 cut(s)	43, 261
PspGI	CCWGG	2 cut(s)	43, 261
PsuI	RGATCY	1 cut(s)	14
PvuII	CAGCTG	1 cut(s)	33
SaqAI	TTAA	2 cut(s)	270, 475
SatI	GCNGC	4 cut(s)	34, 279, 351, 429
Sau3AI	GATC	2 cut(s)	14, 109
SchI	GAGTC	1 cut(s)	397
ScrFI	CCNGG	2 cut(s)	45, 263
SduI	GDGCHC	1 cut(s)	242
SetI	ASST	5 cut(s)	35, 236, 270, 355, 409
SfaNI	GCATC	5 cut(s)	38, 49, 102, 135, 199
SfuI	TTCGAA	1 cut(s)	343
Sse9I	AATT	3 cut(s)	149, 345, 433
SsiI	CCGC	2 cut(s)	25, 140
SspMI	CTAG	1 cut(s)	359
StyD4I	CCNGG	2 cut(s)	43, 261
TaiI	ACGT	2 cut(s)	236, 409
TaqI	TCGA	6 cut(s)	108, 207, 215, 293, 343, 395
TasI	AATT	3 cut(s)	149, 345, 433
TfiI	GAWTC	1 cut(s)	250
Tru1I	TTAA	2 cut(s)	270, 475
Tru9I	TTAA	2 cut(s)	270, 475
TseI	GCWGC	4 cut(s)	33, 278, 350, 428
XspI	CTAG	1 cut(s)	359

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.