RLG00000008033

ERG2 and Sigma1 receptor like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0011384
Physical Location & Seq
Reverse (-)
24695798 .. 24697314
1517 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000008033

Sequence Viewer

Length: 1179 bp
ATGACCATATCAAACAACAAACAGACCATCTCTCCTAAACCCCAAAGAACCCAATTCGCAGCCATGAAGAAAACCGTTACCACACCGACCACGGCGTCGTCGGCGTCGTCTTCATCATCCTCAGTGAAGTCAAGCACCACAGGTCCTCCGATGGAGGAAGACCGATCCGAAAGCTGCTACTACCCAGGTTGCAGAAAAGACGCCAATTGCAACTGTGATATGTGCTTGGCCAGCATCAATGCCACTCTTGATTTGATGCCCTTTAGCGTCCAGAAGAGCTCGATGACAAAGTTCTCGTCTTCGAGGCCCGATCGGCCCAATTCTAGTGTTGAGCAGACTCCCATTTCTTTTGACGCTTCGGTTTTGTCGACCCCAATATCGACCTCTCCTCGGTTTCAAGCTTCTCCGGATCTTAAGCCCTCTGCAAGATTGGATTTTGAGCAGAGTGTGGTGGAGAAAGAGGAGGGGAGGAAATGGGGTTTTGGGTGGGATTGTTGGAAACTAGTTCTGGGTTTAAGTTTGGTTTATGTGGTGGTTTATGGGTTTTATTCTAATTTGGCTTCTGAGGTTTTGAAACCTGTTTTGTCACCTGAGACTGTGAGAAATGCTGGTGAGAAATCTTGGGTTGTGCAAGATTTGAATGGGAGGCTGAGGTTCTTGCAGAAAGAGATGCAGGGTCTTGTTCCTGGCAAGGTTTCAAATTGCAGCTATCCTAATTCTCTTTGGGAAATTACTCAGGATGGTTTGCTTCTGAGTTCACATTGTAAACTGTTCAAATCTGCAATTGAAGAGGTGAGCATATGGGGATGGCCTTTGCAGACTGCAGGGTTGCTTACAACTGGGTTTTCGTCTCGGTCTTACACGATCTTATCAGGCAGAGTCACAGAGTGGTCAGATGGAAAGGTTGGCTATGTGATTCGAAAGGAAAACTCGTCTTGGGTGCAAAGAAATTGGGGTGCCTCAGCAGTGCAGTTAGATCCCAATACATGGCTTCTTGAGTATCGACGGAGCTCAATATCTGACAACCAAAGATTGGTTTCAGCAGTACTCTCTTTCTTGAAGTATAAACTTTCAAGAGCACTCGGAAAGATTAAGCAGAAGTTTTGGCTCCCCTCTACTTTTGGAAAGAGCCAGTACTATGAAGTTGCTGCTGAATATAACATCAAGATCCCAACCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ERG2_Sigma1R

Protein Analysis

393

Amino Acids

43.68

Weight (kDa)

9.24

Isoelectric Point (pI)

44.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011384)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G05440
fragaria_vesca FvH4_4g16270
malus_domestica MD13G1194900.v1.1 MD16G1195700.v1.1
prunus_persica Prupe.1G015700_v2.0.a1
pyrus_communis pycom03g13620 pycom07g11900 pycom13g16710 pycom16g16490
rosa_chinensis RchiOBHm_Chr4g0415861
rosa_laevigata RLG00000008033
rosa_multiflora Rmu_co8517385.1_g000002 Rmu_sc0002438.1_g000006
rosa_roxburghii Rroxscaffold_5G00359720
rosa_rugosa Rorug04G0137000
rosa_samantha Rh4AG198900 Rh4BG196900 Rh4CG209800 Rh4DG196800
rosa_wichuraiana Rw4G016850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 94
AccB1I GGYRCC 1 cut(s) 956
AccB7I CCANNNNNTGG 2 cut(s) 987, 1033
AccI GTMKAC 1 cut(s) 368
AccIII TCCGGA 1 cut(s) 406
AclWI GGATC 4 cut(s) 159, 417, 971, 1162
AcoI YGGCCR 1 cut(s) 228
AcyI GRCGYC 3 cut(s) 95, 104, 201
AdeI CACNNNGTG 1 cut(s) 888
AfaI GTAC 2 cut(s) 1047, 1136
AfiI CCNNNNNNNGG 3 cut(s) 390, 987, 1033
AflII CTTAAG 1 cut(s) 413
AgsI TTSAA 8 cut(s) 398, 574, 640, 699, 775, 788, 1060, 1074
AhlI ACTAGT 1 cut(s) 502
AjnI CCWGG 2 cut(s) 184, 685
AluBI AGCT 5 cut(s) 174, 279, 401, 708, 1011
AluI AGCT 5 cut(s) 174, 279, 401, 708, 1011
Alw21I GWGCWC 3 cut(s) 281, 1013, 1081
Alw26I GTCTC 2 cut(s) 587, 855
AlwI GGATC 4 cut(s) 159, 417, 971, 1162
Aor13HI TCCGGA 1 cut(s) 406
AoxI GGCC 4 cut(s) 228, 305, 314, 809
ApeKI GCWGC 4 cut(s) 59, 174, 705, 1148
ArsI GACNNNNNNTTYG 2 cut(s) 281, 313
AspS9I GGNCC 3 cut(s) 143, 306, 315
AsuHPI GGTGA 3 cut(s) 579, 623, 805
AsuII TTCGAA 1 cut(s) 919
AvaII GGWCC 1 cut(s) 143
BalI TGGCCA 1 cut(s) 230
BanI GGYRCC 1 cut(s) 956
BanII GRGCYC 2 cut(s) 281, 1013
BbsI GAAGAC 3 cut(s) 102, 165, 291
Bbv12I GWGCWC 3 cut(s) 281, 1013, 1081
BbvCI CCTCAGC 2 cut(s) 650, 961
BbvI GCAGC 4 cut(s) 71, 161, 717, 1135
BccI CCATC 5 cut(s) 35, 145, 734, 801, 890
BceAI ACGGC 1 cut(s) 108
BciT130I CCWGG 2 cut(s) 186, 687
BcoDI GTCTC 2 cut(s) 587, 855
BcuI ACTAGT 1 cut(s) 502
BfaI CTAG 2 cut(s) 324, 503
BfmI CTRYAG 1 cut(s) 822
BfrI CTTAAG 1 cut(s) 413
BglI GCCNNNNNGGC 1 cut(s) 313
BisI GCNGC 4 cut(s) 60, 175, 706, 1149
BlsI GCNGC 4 cut(s) 61, 176, 707, 1150
BmcAI AGTACT 2 cut(s) 1047, 1136
Bme1390I CCNGG 2 cut(s) 186, 687
Bme18I GGWCC 1 cut(s) 143
BmgT120I GGNCC 3 cut(s) 143, 306, 315
BmiI GGNNCC 2 cut(s) 958, 1109
BmrFI CCNGG 2 cut(s) 186, 687
BmrI ACTGGG 1 cut(s) 849
BmsI GCATC 3 cut(s) 243, 246, 660
BmuI ACTGGG 1 cut(s) 849
BpiI GAAGAC 3 cut(s) 102, 165, 291
Bpu10I CCTNAGC 2 cut(s) 650, 961
Bpu14I TTCGAA 1 cut(s) 919
BpuEI CTTGAG 1 cut(s) 1016
BsaHI GRCGYC 3 cut(s) 95, 104, 201
BsaJI CCNNGG 3 cut(s) 90, 184, 389
BsaWI WCCGGW 1 cut(s) 406
BsaXI ACNNNNNCTCC 4 cut(s) 16, 46, 130, 160
Bsc4I CCNNNNNNNGG 3 cut(s) 390, 987, 1033
Bse1I ACTGG 2 cut(s) 844, 1132
BseAI TCCGGA 1 cut(s) 406
BseBI CCWGG 2 cut(s) 186, 687
BseDI CCNNGG 3 cut(s) 90, 184, 389
BseGI GGATG 3 cut(s) 116, 745, 812
BseLI CCNNNNNNNGG 3 cut(s) 390, 987, 1033
BseMII CTCAG 7 cut(s) 135, 555, 582, 641, 743, 749, 975
BseNI ACTGG 2 cut(s) 844, 1132
BseRI GAGGAG 2 cut(s) 378, 476
BseXI GCAGC 4 cut(s) 71, 161, 717, 1135
BsgI GTGCAG 1 cut(s) 989
Bsh1285I CGRYCG 1 cut(s) 313
BshFI GGCC 4 cut(s) 230, 307, 316, 811
BshNI GGYRCC 1 cut(s) 956
BsiEI CGRYCG 1 cut(s) 313
BsiHKAI GWGCWC 3 cut(s) 281, 1013, 1081
BsiSI CCGG 1 cut(s) 407
BslI CCNNNNNNNGG 3 cut(s) 390, 987, 1033
BsmAI GTCTC 2 cut(s) 587, 855
BsmBI CGTCTC 1 cut(s) 855
BsnI GGCC 4 cut(s) 230, 307, 316, 811
Bsp119I TTCGAA 1 cut(s) 919
Bsp1286I GDGCHC 3 cut(s) 281, 1013, 1081
Bsp13I TCCGGA 1 cut(s) 406
Bsp143I GATC 6 cut(s) 164, 310, 409, 864, 976, 1167
BspANI GGCC 4 cut(s) 230, 307, 316, 811
BspCNI CTCAG 7 cut(s) 134, 556, 583, 642, 744, 748, 974
BspEI TCCGGA 1 cut(s) 406
BspLI GGNNCC 2 cut(s) 958, 1109
BspMAI CTGCAG 1 cut(s) 826
BspPI GGATC 4 cut(s) 159, 417, 971, 1162
BspQI GCTCTTC 1 cut(s) 269
BspT104I TTCGAA 1 cut(s) 919
BspT107I GGYRCC 1 cut(s) 956
BspTI CTTAAG 1 cut(s) 413
BsrI ACTGG 2 cut(s) 844, 1132
BssECI CCNNGG 3 cut(s) 90, 184, 389
BssMI GATC 6 cut(s) 164, 310, 409, 864, 976, 1167
BssNI GRCGYC 3 cut(s) 95, 104, 201
Bst2UI CCWGG 2 cut(s) 186, 687
Bst4CI ACNGT 4 cut(s) 76, 215, 598, 771
Bst6I CTCTTC 2 cut(s) 269, 783
BstACI GRCGYC 3 cut(s) 95, 104, 201
BstAFI CTTAAG 1 cut(s) 413
BstBI TTCGAA 1 cut(s) 919
BstC8I GCNNGC 1 cut(s) 232
BstDEI CTNAG 7 cut(s) 121, 564, 591, 650, 735, 752, 961
BstDSI CCRYGG 1 cut(s) 90
BstF5I GGATG 3 cut(s) 116, 745, 812
BstKTI GATC 6 cut(s) 167, 313, 412, 867, 979, 1170
BstMAI GTCTC 2 cut(s) 587, 855
BstMBI GATC 6 cut(s) 164, 310, 409, 864, 976, 1167
BstMCI CGRYCG 1 cut(s) 313
BstMWI GCNNNNNNNGC 3 cut(s) 101, 231, 313
BstNI CCWGG 2 cut(s) 186, 687
BstSCI CCNGG 2 cut(s) 184, 685
BstSFI CTRYAG 1 cut(s) 822
BstV1I GCAGC 4 cut(s) 71, 161, 717, 1135
BstV2I GAAGAC 3 cut(s) 102, 165, 291
BstX2I RGATCY 3 cut(s) 409, 976, 1167
BstYI RGATCY 3 cut(s) 409, 976, 1167
BsuRI GGCC 4 cut(s) 230, 307, 316, 811
BtgI CCRYGG 1 cut(s) 90
BtsCI GGATG 3 cut(s) 116, 745, 812
BtsI GCAGTG 1 cut(s) 972
BtsIMutI CAGTG 2 cut(s) 129, 972
Cac8I GCNNGC 1 cut(s) 232
Cfr13I GGNCC 3 cut(s) 143, 306, 315
CseI GACGC 5 cut(s) 84, 93, 209, 256, 362
Csp6I GTAC 2 cut(s) 1046, 1135
CviAII CATG 2 cut(s) 64, 987
CviQI GTAC 2 cut(s) 1046, 1135
DdeI CTNAG 7 cut(s) 121, 564, 591, 650, 735, 752, 961
DpnI GATC 6 cut(s) 166, 312, 411, 866, 978, 1169
DpnII GATC 6 cut(s) 164, 310, 409, 864, 976, 1167
DraIII CACNNNGTG 1 cut(s) 888
DrdI GACNNNNNNGTC 1 cut(s) 94
DseDI GACNNNNNNGTC 1 cut(s) 94
EaeI YGGCCR 1 cut(s) 228
Eam1104I CTCTTC 2 cut(s) 269, 783
EarI CTCTTC 2 cut(s) 269, 783
Ecl136II GAGCTC 2 cut(s) 279, 1011
Eco24I GRGCYC 2 cut(s) 281, 1013
Eco47I GGWCC 1 cut(s) 143
Eco53kI GAGCTC 2 cut(s) 279, 1011
EcoICRI GAGCTC 2 cut(s) 279, 1011
EcoO109I RGGNCCY 1 cut(s) 143
EcoRII CCWGG 2 cut(s) 184, 685
EcoT38I GRGCYC 2 cut(s) 281, 1013
Esp3I CGTCTC 1 cut(s) 855
FaeI CATG 2 cut(s) 67, 990
FatI CATG 2 cut(s) 63, 986
FauNDI CATATG 1 cut(s) 800
FblI GTMKAC 1 cut(s) 368
Fnu4HI GCNGC 4 cut(s) 60, 175, 706, 1149
FokI GGATG 3 cut(s) 103, 752, 819
FriOI GRGCYC 2 cut(s) 281, 1013
Fsp4HI GCNGC 4 cut(s) 60, 175, 706, 1149
FspBI CTAG 2 cut(s) 324, 503
GluI GCNGC 4 cut(s) 60, 175, 706, 1149
HaeIII GGCC 4 cut(s) 230, 307, 316, 811
HapII CCGG 1 cut(s) 407
HgaI GACGC 5 cut(s) 84, 93, 209, 256, 362
Hin1I GRCGYC 3 cut(s) 95, 104, 201
Hin1II CATG 2 cut(s) 67, 990
HincII GTYRAC 1 cut(s) 369
HindII GTYRAC 1 cut(s) 369
HindIII AAGCTT 1 cut(s) 399
HinfI GANTC 3 cut(s) 337, 879, 916
HpaII CCGG 1 cut(s) 407
HphI GGTGA 3 cut(s) 579, 623, 805
Hpy166II GTNNAC 3 cut(s) 369, 758, 767
Hpy188I TCNGA 7 cut(s) 150, 169, 565, 753, 895, 1021, 1085
Hpy188III TCNNGA 8 cut(s) 248, 271, 407, 737, 995, 1057, 1074, 1165
Hpy8I GTNNAC 3 cut(s) 369, 758, 767
Hpy99I CGWCG 4 cut(s) 100, 103, 109, 1008
HpyCH4III ACNGT 4 cut(s) 76, 215, 598, 771
HpyF10VI GCNNNNNNNGC 3 cut(s) 101, 231, 313
HpyF3I CTNAG 7 cut(s) 121, 564, 591, 650, 735, 752, 961
Hsp92I GRCGYC 3 cut(s) 95, 104, 201
Hsp92II CATG 2 cut(s) 67, 990
Kpn2I TCCGGA 1 cut(s) 406
Kzo9I GATC 6 cut(s) 164, 310, 409, 864, 976, 1167
LguI GCTCTTC 1 cut(s) 269
LmnI GCTCC 2 cut(s) 1008, 1113
Lsp1109I GCAGC 4 cut(s) 71, 161, 717, 1135
LweI GCATC 3 cut(s) 243, 246, 660
MaeI CTAG 2 cut(s) 324, 503
MaeIII GTNAC 3 cut(s) 76, 585, 880
MalI GATC 6 cut(s) 166, 312, 411, 866, 978, 1169
MboI GATC 6 cut(s) 164, 310, 409, 864, 976, 1167
MboII GAAGA 6 cut(s) 79, 102, 170, 286, 291, 800
MfeI CAATTG 2 cut(s) 205, 783
MflI RGATCY 3 cut(s) 409, 976, 1167
MhlI GDGCHC 3 cut(s) 281, 1013, 1081
MlsI TGGCCA 1 cut(s) 230
MluCI AATT 9 cut(s) 53, 205, 319, 553, 700, 715, 729, 783, 949
MluNI TGGCCA 1 cut(s) 230
MlyI GAGTC 2 cut(s) 331, 888
MmeI TCCRAC 1 cut(s) 476
Mox20I TGGCCA 1 cut(s) 230
MroI TCCGGA 1 cut(s) 406
MscI TGGCCA 1 cut(s) 230
MseI TTAA 3 cut(s) 414, 515, 1092
Msp20I TGGCCA 1 cut(s) 230
MspCI CTTAAG 1 cut(s) 413
MspI CCGG 1 cut(s) 407
MspR9I CCNGG 2 cut(s) 186, 687
MunI CAATTG 2 cut(s) 205, 783
MvaI CCWGG 2 cut(s) 186, 687
MwoI GCNNNNNNNGC 3 cut(s) 101, 231, 313
NdeI CATATG 1 cut(s) 800
NdeII GATC 6 cut(s) 164, 310, 409, 864, 976, 1167
NlaIII CATG 2 cut(s) 67, 990
NlaIV GGNNCC 2 cut(s) 958, 1109
NmuCI GTSAC 2 cut(s) 585, 880
NspV TTCGAA 1 cut(s) 919
PciSI GCTCTTC 1 cut(s) 269
PcsI WCGNNNNNNNCGW 2 cut(s) 104, 365
PfeI GAWTC 1 cut(s) 916
PflMI CCANNNNNTGG 2 cut(s) 987, 1033
PkrI GCNGC 4 cut(s) 61, 176, 707, 1150
Ple19I CGATCG 1 cut(s) 313
PleI GAGTC 2 cut(s) 331, 887
PpsI GAGTC 2 cut(s) 331, 887
PpuMI RGGWCCY 1 cut(s) 143
Psp124BI GAGCTC 2 cut(s) 281, 1013
Psp5II RGGWCCY 1 cut(s) 143
Psp6I CCWGG 2 cut(s) 184, 685
PspGI CCWGG 2 cut(s) 184, 685
PspN4I GGNNCC 2 cut(s) 958, 1109
PspPI GGNCC 3 cut(s) 143, 306, 315
PspPPI RGGWCCY 1 cut(s) 143
PstI CTGCAG 1 cut(s) 826
PsuI RGATCY 3 cut(s) 409, 976, 1167
PvuI CGATCG 1 cut(s) 313
RsaI GTAC 2 cut(s) 1047, 1136
RsaNI GTAC 2 cut(s) 1046, 1135
SacI GAGCTC 2 cut(s) 281, 1013
SalI GTCGAC 1 cut(s) 367
SapI GCTCTTC 1 cut(s) 269
SaqAI TTAA 3 cut(s) 414, 515, 1092
SatI GCNGC 4 cut(s) 60, 175, 706, 1149
Sau3AI GATC 6 cut(s) 164, 310, 409, 864, 976, 1167
Sau96I GGNCC 3 cut(s) 143, 306, 315
ScaI AGTACT 2 cut(s) 1047, 1136
SchI GAGTC 2 cut(s) 331, 888
ScrFI CCNGG 2 cut(s) 186, 687
SduI GDGCHC 3 cut(s) 281, 1013, 1081
SfaNI GCATC 3 cut(s) 243, 246, 660
SfcI CTRYAG 1 cut(s) 822
SfiI GGCCNNNNNGGCC 1 cut(s) 313
SfuI TTCGAA 1 cut(s) 919
SinI GGWCC 1 cut(s) 143
SmlI CTYRAG 2 cut(s) 413, 995
SmoI CTYRAG 2 cut(s) 413, 995
SpeI ACTAGT 1 cut(s) 502
Sse9I AATT 9 cut(s) 53, 205, 319, 553, 700, 715, 729, 783, 949
SspMI CTAG 2 cut(s) 324, 503
SstI GAGCTC 2 cut(s) 281, 1013
StyD4I CCNGG 2 cut(s) 184, 685
TaaI ACNGT 4 cut(s) 76, 215, 598, 771
TaqI TCGA 6 cut(s) 281, 302, 368, 380, 919, 1003
TaqII GACCGA 2 cut(s) 177, 843
TasI AATT 9 cut(s) 53, 205, 319, 553, 700, 715, 729, 783, 949
TatI WGTACW 2 cut(s) 1045, 1134
TfiI GAWTC 1 cut(s) 916
Tru1I TTAA 3 cut(s) 414, 515, 1092
Tru9I TTAA 3 cut(s) 414, 515, 1092
TscAI CASTG 2 cut(s) 129, 972
TseFI GTSAC 2 cut(s) 585, 880
TseI GCWGC 4 cut(s) 59, 174, 705, 1148
Tsp45I GTSAC 2 cut(s) 585, 880
TspDTI ATGAA 3 cut(s) 80, 102, 1155
TspGWI ACGGA 1 cut(s) 1021
TspRI CASTG 2 cut(s) 129, 972
Van91I CCANNNNNTGG 2 cut(s) 987, 1033
Vha464I CTTAAG 1 cut(s) 413
VpaK11BI GGWCC 1 cut(s) 143
XmiI GTMKAC 1 cut(s) 368
XspI CTAG 2 cut(s) 324, 503
ZrmI AGTACT 2 cut(s) 1047, 1136
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.