MD13G1194900.v1.1

ERG2 and Sigma1 receptor like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
OG0011384
Physical Location & Seq
Reverse (-)
16839118 .. 16840950
1833 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1194900.v1.1.491

Sequence Viewer

Length: 1104 bp
ATGAAATCCGCCCTCTCATCGTCGCCGTCAATGACAACTACATCATCCTCAGTGAAATCGAGCACCACCACAGCCATGGACGATGACAGATCTGAAAACCGCGACAGCTGCTACTACCCAGGATGCCGGAAAGATGCCAACTGCAACTGCGAAATGTGCTTGGCCAGCATCAATGCCACTCTCGATCTCATGCCTTTCAGCATCCAGAAAAGCCCGCTCACCAAATTCTCATCTTCAAGGCCGAAGAACAACCCAAGTGTTGAACGCACTCCCATCTCTTTCGATGCTTCGATTTTGTCCACACCCACGTCGGGCTCTCCTTCGATTCCTGTGTCTCCGGAGCGTAAACCGGCCGCAAGATTGAAATCGAAGAAGAAGACTAAGAAGACGGAGAGAAAATGGGGTTTTGGGTGTGAATTCTGGAGATTGATTTTGGGTTTAAGCTTGGTTTATGTGGCGATGTGCGGGTTTTCTAAGATGGTTTCGGGTGCTTTGAAACCTATTCTGTCGCCGGAGATGGTGATAAATGTTAGTGAAAAATCTTGGGTTGTGGATGATATGAATGGCAGGCTGAGGTTCTTGCAGAAAGAAATGCAGGGTCTTGTTCCTCGGAGGGTTTCGAATTGCAGCTATCCTAGATCTATATGGGACATTAGTCAGGATGGTTTGCTTCTGAGCTCACATTGCACATTGTACAAATCCGCAATTGAGGAGGTGAGGATATGGGGATGGCCTTTGCAGACCGCCGGGTTGCTCACGAGTGGGTTTTCTTCCCGGTCTTTCACAATCTTATCCGGCAGAGTCACAGAGTGGTCGGATGGAAAGGTCGGCAGGTATGTGATTCGGAAGCCAAACAGTTCCTGGGTGCAGAGAAGTTGGGGTGCCTCAGCTGTGCAGCTAGATCCGAATACATGGATTCTTGAGTACCGGTGGAGCACGATATGTGATAACCAAAGATTGGTTTCAGCAGCACTAGCCTTTTTGAAGAATATGGTCTCAAGAATGCTTGGAAAGATGCAGCAGAAATTTTGGCTCTTATCTACTTTTGGCAACAACCAGTACCTTGAAACTACTGCAAATTACAATATCGAAATCCCAACCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ERG2_Sigma1R

Protein Analysis

368

Amino Acids

41.11

Weight (kDa)

9.58

Isoelectric Point (pI)

48.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011384)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G05440
fragaria_vesca FvH4_4g16270
malus_domestica MD13G1194900.v1.1 MD16G1195700.v1.1
prunus_persica Prupe.1G015700_v2.0.a1
pyrus_communis pycom03g13620 pycom07g11900 pycom13g16710 pycom16g16490
rosa_chinensis RchiOBHm_Chr4g0415861
rosa_laevigata RLG00000008033
rosa_multiflora Rmu_co8517385.1_g000002 Rmu_sc0002438.1_g000006
rosa_roxburghii Rroxscaffold_5G00359720
rosa_rugosa Rorug04G0137000
rosa_samantha Rh4AG198900 Rh4BG196900 Rh4CG209800 Rh4DG196800
rosa_wichuraiana Rw4G016850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 822
AccB1I GGYRCC 1 cut(s) 881
AccB7I CCANNNNNTGG 1 cut(s) 958
AccBSI CCGCTC 1 cut(s) 217
AccII CGCG 1 cut(s) 102
AccIII TCCGGA 1 cut(s) 337
AciI CCGC 7 cut(s) 9, 100, 215, 354, 465, 702, 744
AclWI GGATC 1 cut(s) 896
AcoI YGGCCR 2 cut(s) 162, 351
AcsI RAATTY 3 cut(s) 224, 416, 1025
AdeI CACNNNGTG 1 cut(s) 810
AfaI GTAC 3 cut(s) 695, 926, 1061
AfiI CCNNNNNNNGG 2 cut(s) 311, 958
AgeI ACCGGT 1 cut(s) 927
AgsI TTSAA 6 cut(s) 237, 263, 364, 496, 985, 1067
AjiI CACGTC 1 cut(s) 309
AjnI CCWGG 2 cut(s) 118, 860
AluBI AGCT 6 cut(s) 108, 444, 630, 678, 890, 898
AluI AGCT 6 cut(s) 108, 444, 630, 678, 890, 898
Alw21I GWGCWC 3 cut(s) 65, 680, 938
Alw26I GTCTC 2 cut(s) 339, 1000
AlwI GGATC 1 cut(s) 896
AlwNI CAGNNNCTG 1 cut(s) 861
Aor13HI TCCGGA 1 cut(s) 337
AoxI GGCC 4 cut(s) 162, 239, 351, 731
ApeKI GCWGC 5 cut(s) 108, 627, 895, 968, 1018
ApoI RAATTY 3 cut(s) 224, 416, 1025
AsiGI ACCGGT 1 cut(s) 927
AsuC2I CCSGG 2 cut(s) 748, 775
AsuHPI GGTGA 3 cut(s) 211, 532, 727
AsuII TTCGAA 1 cut(s) 620
BalI TGGCCA 1 cut(s) 164
BanI GGYRCC 1 cut(s) 881
BanII GRGCYC 2 cut(s) 317, 680
BauI CACGAG 1 cut(s) 757
BbsI GAAGAC 2 cut(s) 383, 392
Bbv12I GWGCWC 3 cut(s) 65, 680, 938
BbvCI CCTCAGC 2 cut(s) 572, 886
BbvI GCAGC 5 cut(s) 95, 639, 907, 980, 1030
BccI CCATC 6 cut(s) 281, 472, 511, 656, 723, 812
BceAI ACGGC 1 cut(s) 10
BciT130I CCWGG 2 cut(s) 120, 862
BcnI CCSGG 2 cut(s) 748, 775
BcoDI GTCTC 2 cut(s) 339, 1000
BfaI CTAG 3 cut(s) 636, 899, 974
BfuAI ACCTGC 1 cut(s) 822
BglII AGATCT 2 cut(s) 89, 638
BisI GCNGC 6 cut(s) 109, 354, 628, 896, 969, 1019
BlsI GCNGC 6 cut(s) 110, 355, 629, 897, 970, 1020
Bme1390I CCNGG 4 cut(s) 120, 748, 775, 862
BmgBI CACGTC 1 cut(s) 309
BmiI GGNNCC 1 cut(s) 883
BmrFI CCNGG 4 cut(s) 120, 748, 775, 862
BmsI GCATC 6 cut(s) 113, 124, 177, 210, 274, 1005
BoxI GACNNNNGTC 1 cut(s) 654
BpiI GAAGAC 2 cut(s) 383, 392
BpmI CTGGAG 1 cut(s) 442
Bpu10I CCTNAGC 2 cut(s) 572, 886
Bpu14I TTCGAA 1 cut(s) 620
BpuEI CTTGAG 2 cut(s) 941, 982
BpuMI CCSGG 2 cut(s) 748, 775
BsaBI GATNNNNATC 1 cut(s) 364
BsaI GGTCTC 1 cut(s) 1000
BsaJI CCNNGG 4 cut(s) 75, 118, 608, 861
BsaWI WCCGGW 2 cut(s) 337, 927
Bsc4I CCNNNNNNNGG 2 cut(s) 311, 958
Bse118I RCCGGY 2 cut(s) 349, 927
Bse1I ACTGG 1 cut(s) 1057
Bse3DI GCAATG 1 cut(s) 682
Bse8I GATNNNNATC 1 cut(s) 364
BseAI TCCGGA 1 cut(s) 337
BseBI CCWGG 2 cut(s) 120, 862
BseDI CCNNGG 4 cut(s) 75, 118, 608, 861
BseGI GGATG 7 cut(s) 44, 128, 201, 559, 667, 734, 823
BseJI GATNNNNATC 1 cut(s) 364
BseLI CCNNNNNNNGG 2 cut(s) 311, 958
BseMI GCAATG 1 cut(s) 682
BseMII CTCAG 4 cut(s) 63, 563, 665, 900
BseNI ACTGG 1 cut(s) 1057
BseRI GAGGAG 1 cut(s) 725
BseX3I CGGCCG 1 cut(s) 351
BseXI GCAGC 5 cut(s) 95, 639, 907, 980, 1030
BsgI GTGCAG 2 cut(s) 887, 914
Bsh1236I CGCG 1 cut(s) 102
Bsh1285I CGRYCG 1 cut(s) 354
BshFI GGCC 4 cut(s) 164, 241, 353, 733
BshNI GGYRCC 1 cut(s) 881
BshTI ACCGGT 1 cut(s) 927
BsiEI CGRYCG 1 cut(s) 354
BsiHKAI GWGCWC 3 cut(s) 65, 680, 938
BsiSI CCGG 8 cut(s) 127, 338, 350, 512, 747, 775, 795, 928
BslFI GGGAC 1 cut(s) 662
BslI CCNNNNNNNGG 2 cut(s) 311, 958
BsmAI GTCTC 2 cut(s) 339, 1000
BsmFI GGGAC 1 cut(s) 662
BsmI GAATGC 1 cut(s) 1008
BsnI GGCC 4 cut(s) 164, 241, 353, 733
Bso31I GGTCTC 1 cut(s) 1000
Bsp119I TTCGAA 1 cut(s) 620
Bsp1286I GDGCHC 4 cut(s) 65, 317, 680, 938
Bsp13I TCCGGA 1 cut(s) 337
Bsp1407I TGTACA 1 cut(s) 693
Bsp143I GATC 4 cut(s) 89, 184, 638, 901
Bsp19I CCATGG 1 cut(s) 75
BspACI CCGC 7 cut(s) 9, 100, 215, 354, 465, 702, 744
BspANI GGCC 4 cut(s) 164, 241, 353, 733
BspCNI CTCAG 4 cut(s) 62, 564, 666, 899
BspEI TCCGGA 1 cut(s) 337
BspFNI CGCG 1 cut(s) 102
BspLI GGNNCC 1 cut(s) 883
BspMI ACCTGC 1 cut(s) 822
BspPI GGATC 1 cut(s) 896
BspT104I TTCGAA 1 cut(s) 620
BspT107I GGYRCC 1 cut(s) 881
BspTNI GGTCTC 1 cut(s) 1000
BsrBI CCGCTC 1 cut(s) 217
BsrDI GCAATG 1 cut(s) 682
BsrFI RCCGGY 2 cut(s) 349, 927
BsrGI TGTACA 1 cut(s) 693
BsrI ACTGG 1 cut(s) 1057
BssAI RCCGGY 2 cut(s) 349, 927
BssECI CCNNGG 4 cut(s) 75, 118, 608, 861
BssMI GATC 4 cut(s) 89, 184, 638, 901
BssSI CACGAG 1 cut(s) 757
BssT1I CCWWGG 1 cut(s) 75
Bst2BI CACGAG 1 cut(s) 757
Bst2UI CCWGG 2 cut(s) 120, 862
Bst4CI ACNGT 1 cut(s) 857
BstAUI TGTACA 1 cut(s) 693
BstBI TTCGAA 1 cut(s) 620
BstC8I GCNNGC 3 cut(s) 166, 215, 569
BstDEI CTNAG 6 cut(s) 49, 381, 474, 572, 674, 886
BstDSI CCRYGG 1 cut(s) 75
BstF5I GGATG 7 cut(s) 44, 128, 201, 559, 667, 734, 823
BstFNI CGCG 1 cut(s) 102
BstKTI GATC 4 cut(s) 92, 187, 641, 904
BstMAI GTCTC 2 cut(s) 339, 1000
BstMBI GATC 4 cut(s) 89, 184, 638, 901
BstMCI CGRYCG 1 cut(s) 354
BstMWI GCNNNNNNNGC 5 cut(s) 108, 156, 165, 684, 974
BstNI CCWGG 2 cut(s) 120, 862
BstPAI GACNNNNGTC 1 cut(s) 654
BstSCI CCNGG 4 cut(s) 118, 746, 773, 860
BstUI CGCG 1 cut(s) 102
BstV1I GCAGC 5 cut(s) 95, 639, 907, 980, 1030
BstV2I GAAGAC 2 cut(s) 383, 392
BstX2I RGATCY 3 cut(s) 89, 638, 901
BstXI CCANNNNNNTGG 1 cut(s) 76
BstYI RGATCY 3 cut(s) 89, 638, 901
BstZI CGGCCG 1 cut(s) 351
BsuRI GGCC 4 cut(s) 164, 241, 353, 733
BtgI CCRYGG 1 cut(s) 75
BtgZI GCGATG 1 cut(s) 473
BtrI CACGTC 1 cut(s) 309
BtsCI GGATG 7 cut(s) 44, 128, 201, 559, 667, 734, 823
BtsIMutI CAGTG 1 cut(s) 57
BveI ACCTGC 1 cut(s) 822
Cac8I GCNNGC 3 cut(s) 166, 215, 569
CaiI CAGNNNCTG 1 cut(s) 861
Cfr10I RCCGGY 2 cut(s) 349, 927
Csp6I GTAC 3 cut(s) 694, 925, 1060
CspAI ACCGGT 1 cut(s) 927
CviAII CATG 3 cut(s) 76, 190, 912
CviQI GTAC 3 cut(s) 694, 925, 1060
DdeI CTNAG 6 cut(s) 49, 381, 474, 572, 674, 886
DpnI GATC 4 cut(s) 91, 186, 640, 903
DpnII GATC 4 cut(s) 89, 184, 638, 901
DraIII CACNNNGTG 1 cut(s) 810
EaeI YGGCCR 2 cut(s) 162, 351
EagI CGGCCG 1 cut(s) 351
Ecl136II GAGCTC 1 cut(s) 678
EclXI CGGCCG 1 cut(s) 351
Eco130I CCWWGG 1 cut(s) 75
Eco24I GRGCYC 2 cut(s) 317, 680
Eco31I GGTCTC 1 cut(s) 1000
Eco52I CGGCCG 1 cut(s) 351
Eco53kI GAGCTC 1 cut(s) 678
EcoICRI GAGCTC 1 cut(s) 678
EcoRI GAATTC 1 cut(s) 416
EcoRII CCWGG 2 cut(s) 118, 860
EcoT14I CCWWGG 1 cut(s) 75
EcoT38I GRGCYC 2 cut(s) 317, 680
ErhI CCWWGG 1 cut(s) 75
FaeI CATG 3 cut(s) 79, 193, 915
FaqI GGGAC 1 cut(s) 662
FatI CATG 3 cut(s) 75, 189, 911
FauI CCCGC 2 cut(s) 222, 458
Fnu4HI GCNGC 6 cut(s) 109, 354, 628, 896, 969, 1019
FokI GGATG 7 cut(s) 31, 135, 188, 566, 674, 741, 830
FriOI GRGCYC 2 cut(s) 317, 680
Fsp4HI GCNGC 6 cut(s) 109, 354, 628, 896, 969, 1019
FspBI CTAG 3 cut(s) 636, 899, 974
GluI GCNGC 6 cut(s) 109, 354, 628, 896, 969, 1019
GsuI CTGGAG 1 cut(s) 442
HaeIII GGCC 4 cut(s) 164, 241, 353, 733
HapII CCGG 8 cut(s) 127, 338, 350, 512, 747, 775, 795, 928
Hin1II CATG 3 cut(s) 79, 193, 915
HindIII AAGCTT 1 cut(s) 442
HinfI GANTC 4 cut(s) 325, 801, 841, 916
HpaII CCGG 8 cut(s) 127, 338, 350, 512, 747, 775, 795, 928
HphI GGTGA 3 cut(s) 211, 532, 727
Hpy166II GTNNAC 2 cut(s) 300, 347
Hpy188I TCNGA 6 cut(s) 94, 612, 675, 817, 846, 906
Hpy188III TCNNGA 8 cut(s) 182, 205, 338, 421, 659, 757, 920, 999
Hpy8I GTNNAC 2 cut(s) 300, 347
Hpy99I CGWCG 2 cut(s) 25, 313
HpyAV CCTTC 1 cut(s) 330
HpyCH4III ACNGT 1 cut(s) 857
HpyCH4IV ACGT 1 cut(s) 308
HpyF10VI GCNNNNNNNGC 5 cut(s) 108, 156, 165, 684, 974
HpyF3I CTNAG 6 cut(s) 49, 381, 474, 572, 674, 886
HpySE526I ACGT 1 cut(s) 308
Hsp92II CATG 3 cut(s) 79, 193, 915
Kpn2I TCCGGA 1 cut(s) 337
Kzo9I GATC 4 cut(s) 89, 184, 638, 901
LmnI GCTCC 2 cut(s) 340, 933
Lsp1109I GCAGC 5 cut(s) 95, 639, 907, 980, 1030
LweI GCATC 6 cut(s) 113, 124, 177, 210, 274, 1005
MaeI CTAG 3 cut(s) 636, 899, 974
MaeII ACGT 1 cut(s) 308
MaeIII GTNAC 1 cut(s) 802
MalI GATC 4 cut(s) 91, 186, 640, 903
MbiI CCGCTC 1 cut(s) 217
MboI GATC 4 cut(s) 89, 184, 638, 901
MboII GAAGA 8 cut(s) 225, 256, 382, 385, 388, 397, 762, 997
MfeI CAATTG 1 cut(s) 705
MflI RGATCY 3 cut(s) 89, 638, 901
MhlI GDGCHC 4 cut(s) 65, 317, 680, 938
MlsI TGGCCA 1 cut(s) 164
MluCI AATT 6 cut(s) 224, 416, 622, 705, 1025, 1078
MluNI TGGCCA 1 cut(s) 164
MlyI GAGTC 1 cut(s) 810
MmeI TCCRAC 1 cut(s) 795
MnlI CCTC 9 cut(s) 23, 58, 567, 606, 618, 703, 706, 711, 895
Mox20I TGGCCA 1 cut(s) 164
MroI TCCGGA 1 cut(s) 337
MscI TGGCCA 1 cut(s) 164
MseI TTAA 1 cut(s) 440
MslI CAYNNNNRTG 1 cut(s) 74
Msp20I TGGCCA 1 cut(s) 164
MspA1I CMGCKG 2 cut(s) 108, 890
MspI CCGG 8 cut(s) 127, 338, 350, 512, 747, 775, 795, 928
MspR9I CCNGG 4 cut(s) 120, 748, 775, 862
MunI CAATTG 1 cut(s) 705
Mva1269I GAATGC 1 cut(s) 1008
MvaI CCWGG 2 cut(s) 120, 862
MvnI CGCG 1 cut(s) 102
MwoI GCNNNNNNNGC 5 cut(s) 108, 156, 165, 684, 974
NciI CCSGG 2 cut(s) 748, 775
NcoI CCATGG 1 cut(s) 75
NdeII GATC 4 cut(s) 89, 184, 638, 901
NlaIII CATG 3 cut(s) 79, 193, 915
NlaIV GGNNCC 1 cut(s) 883
NmuCI GTSAC 1 cut(s) 802
NspV TTCGAA 1 cut(s) 620
PctI GAATGC 1 cut(s) 1008
PfeI GAWTC 3 cut(s) 325, 841, 916
PflMI CCANNNNNTGG 1 cut(s) 958
PinAI ACCGGT 1 cut(s) 927
PkrI GCNGC 6 cut(s) 110, 355, 629, 897, 970, 1020
PleI GAGTC 1 cut(s) 809
PpsI GAGTC 1 cut(s) 809
PshAI GACNNNNGTC 1 cut(s) 654
Psp124BI GAGCTC 1 cut(s) 680
Psp6I CCWGG 2 cut(s) 118, 860
PspGI CCWGG 2 cut(s) 118, 860
PspN4I GGNNCC 1 cut(s) 883
PstNI CAGNNNCTG 1 cut(s) 861
PsuI RGATCY 3 cut(s) 89, 638, 901
PvuII CAGCTG 2 cut(s) 108, 890
RsaI GTAC 3 cut(s) 695, 926, 1061
RsaNI GTAC 3 cut(s) 694, 925, 1060
RseI CAYNNNNRTG 1 cut(s) 74
SacI GAGCTC 1 cut(s) 680
SaqAI TTAA 1 cut(s) 440
SatI GCNGC 6 cut(s) 109, 354, 628, 896, 969, 1019
Sau3AI GATC 4 cut(s) 89, 184, 638, 901
SchI GAGTC 1 cut(s) 810
ScrFI CCNGG 4 cut(s) 120, 748, 775, 862
SduI GDGCHC 4 cut(s) 65, 317, 680, 938
SfaNI GCATC 6 cut(s) 113, 124, 177, 210, 274, 1005
SfuI TTCGAA 1 cut(s) 620
SmiMI CAYNNNNRTG 1 cut(s) 74
SmlI CTYRAG 2 cut(s) 920, 997
SmoI CTYRAG 2 cut(s) 920, 997
Sse9I AATT 6 cut(s) 224, 416, 622, 705, 1025, 1078
SsiI CCGC 7 cut(s) 9, 100, 215, 354, 465, 702, 744
SspMI CTAG 3 cut(s) 636, 899, 974
SstI GAGCTC 1 cut(s) 680
StyD4I CCNGG 4 cut(s) 118, 746, 773, 860
StyI CCWWGG 1 cut(s) 75
TaaI ACNGT 1 cut(s) 857
TaiI ACGT 1 cut(s) 311
TaqI TCGA 8 cut(s) 59, 183, 282, 290, 323, 368, 620, 1089
TasI AATT 6 cut(s) 224, 416, 622, 705, 1025, 1078
TatI WGTACW 1 cut(s) 693
TauI GCSGC 1 cut(s) 356
TfiI GAWTC 3 cut(s) 325, 841, 916
Tru1I TTAA 1 cut(s) 440
Tru9I TTAA 1 cut(s) 440
TscAI CASTG 1 cut(s) 57
TseFI GTSAC 1 cut(s) 802
TseI GCWGC 5 cut(s) 108, 627, 895, 968, 1018
Tsp45I GTSAC 1 cut(s) 802
TspDTI ATGAA 2 cut(s) 17, 575
TspGWI ACGGA 1 cut(s) 404
TspRI CASTG 1 cut(s) 57
Van91I CCANNNNNTGG 1 cut(s) 958
XapI RAATTY 3 cut(s) 224, 416, 1025
XcmI CCANNNNNNNNNTGG 2 cut(s) 73, 858
XspI CTAG 3 cut(s) 636, 899, 974
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.