Rroxscaffold_5G00359720

ERG2 and Sigma1 receptor like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0011384
Physical Location & Seq
Forward (+)
39954239 .. 39956036
1798 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00359720.1

Sequence Viewer

Length: 1302 bp
ATGACCATATCAAACAACAAACAGACCATCTCTCCTAAACCCCAAAGAACCCAATTCGCAACCATGAAGAAAACCGTTACCACACCGACCACGGCGTCGTCGGCGTCGTCTTCATCATCCTCAGTGAAGTCAAGCACCACAGGTCCTCCGATGGAGGAAGACCGATCCGAAAGCTGCTACTACCCAGGTTGCAGAAAAGACGCCAATTGCAACTGTGATATGTGCTTGGCCAGCATCAATGCCACTCTTGATTTGATGCCCTTTAGCGTCCAGAAGAGCTCGATGACAAAGTTCTCGTCTTCGAGGCCCAATCGGCCCAATTCTAGTGTTGAGCAGACTCCCATTTCTTTTGACGCTTCGGTTTTGTCGACCCCAATATCGGCCTCTCCTCGGTTTCAAGCTTCTCCGGATCTTAAGCCCTCTGCAAGGTTGGATTTTGAGCAGAGTGTGGTGGAGAAAGAGGAGGGGAGGAAATGGGGTTTTGGGTGGGATTGTTGGAAACTGGTTCTGGGTTTAAGCTTGGTTTATGTGGTGGTTTATGTGTTTTATTCTAATTTGGCTTCTGGGGTTTTGAAACCTGTTTTGTCACCTGAGATTGTGAGAAATGCTGGTGAGAAATCTTGGGTTGTGCAAGATTTGAATGGGAGGCTGAGGTTCTTGCAGAAAGAGATGCAGGGTCTTGTTCCTGGCAAGGTTTCAAATTGCAGCTATCCTAATTCTCTTTGGGAAATTACTCAGGATGGTTTGCTTCTGAGTTCACATTGTAAACTGTTCAAATCTGCAATTGAAGAGGTGAGCATATGGGGATGGCCTTTGCAGACTGCAGGGTTGCTCACAACTGGGTTTTCATCTCGGTCTTACACAATCTTATCAGGCAGAGTCACAGAGTGGTCGGATGGAAAGGTTGGATATGTGATTCGAAAGGAAAACTCGTCTTGGGTGCAAAGAAATTGGGGTGCCTCAGCAGTGCAGTTAGATCCCAATACATGGCTTCTTGAGTATCGACGGAGCTCAATATCTGACAACCAAAGATTTGTTTCGGCAGTACTCTCTTTCTTGAAGTATAAACTTTCAAGAGCACTTGGAAAGATTAAGCAGAAGTTTTGGCTCCCTCTACTTTTGGAAAGAGCCAGTACTATGACGTTACCGCTGAAAATAACATCAAGATCCCAACCTGAAGAGAGTCAGTGGATATATATCAGAGGCTCCATGTCTTCTCTCAGCAGATATCATGATCTCATATCTTGTGAGAAGCCTACAAATGTGATTCCAATGTCTTGTTTGGTATGTGGAACCTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ERG2_Sigma1R

Protein Analysis

433

Amino Acids

48.26

Weight (kDa)

9.27

Isoelectric Point (pI)

48.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011384)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G05440
fragaria_vesca FvH4_4g16270
malus_domestica MD13G1194900.v1.1 MD16G1195700.v1.1
prunus_persica Prupe.1G015700_v2.0.a1
pyrus_communis pycom03g13620 pycom07g11900 pycom13g16710 pycom16g16490
rosa_chinensis RchiOBHm_Chr4g0415861
rosa_laevigata RLG00000008033
rosa_multiflora Rmu_co8517385.1_g000002 Rmu_sc0002438.1_g000006
rosa_roxburghii Rroxscaffold_5G00359720
rosa_rugosa Rorug04G0137000
rosa_samantha Rh4AG198900 Rh4BG196900 Rh4CG209800 Rh4DG196800
rosa_wichuraiana Rw4G016850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 94
AccB1I GGYRCC 1 cut(s) 956
AccB7I CCANNNNNTGG 1 cut(s) 987
AccI GTMKAC 1 cut(s) 368
AccIII TCCGGA 1 cut(s) 406
AciI CCGC 1 cut(s) 1148
AclWI GGATC 4 cut(s) 159, 417, 971, 1161
AcoI YGGCCR 1 cut(s) 228
AcuI CTGAAG 1 cut(s) 1197
AcyI GRCGYC 3 cut(s) 95, 104, 201
AdeI CACNNNGTG 1 cut(s) 888
AfaI GTAC 2 cut(s) 1047, 1135
AfiI CCNNNNNNNGG 4 cut(s) 379, 390, 426, 987
AflII CTTAAG 1 cut(s) 413
AgsI TTSAA 8 cut(s) 398, 574, 640, 699, 775, 788, 1060, 1074
AjnI CCWGG 2 cut(s) 184, 685
AluBI AGCT 6 cut(s) 174, 279, 401, 519, 708, 1011
AluI AGCT 6 cut(s) 174, 279, 401, 519, 708, 1011
Alw21I GWGCWC 3 cut(s) 281, 1013, 1081
AlwI GGATC 4 cut(s) 159, 417, 971, 1161
Aor13HI TCCGGA 1 cut(s) 406
AoxI GGCC 5 cut(s) 228, 305, 314, 381, 809
ApeKI GCWGC 2 cut(s) 174, 705
ArsI GACNNNNNNTTYG 2 cut(s) 281, 313
AspS9I GGNCC 3 cut(s) 143, 306, 315
AsuHPI GGTGA 3 cut(s) 579, 623, 805
AsuII TTCGAA 1 cut(s) 919
AvaII GGWCC 1 cut(s) 143
BalI TGGCCA 1 cut(s) 230
BanI GGYRCC 1 cut(s) 956
BanII GRGCYC 2 cut(s) 281, 1013
BbsI GAAGAC 4 cut(s) 102, 165, 291, 1206
Bbv12I GWGCWC 3 cut(s) 281, 1013, 1081
BbvCI CCTCAGC 2 cut(s) 650, 961
BbvI GCAGC 2 cut(s) 161, 717
BccI CCATC 5 cut(s) 35, 145, 734, 801, 890
BceAI ACGGC 1 cut(s) 108
BciT130I CCWGG 2 cut(s) 186, 687
BfaI CTAG 1 cut(s) 324
BfmI CTRYAG 1 cut(s) 822
BfrI CTTAAG 1 cut(s) 413
BglI GCCNNNNNGGC 1 cut(s) 313
BisI GCNGC 2 cut(s) 175, 706
BlsI GCNGC 2 cut(s) 176, 707
BmcAI AGTACT 2 cut(s) 1047, 1135
Bme1390I CCNGG 2 cut(s) 186, 687
Bme18I GGWCC 1 cut(s) 143
BmgT120I GGNCC 3 cut(s) 143, 306, 315
BmiI GGNNCC 4 cut(s) 958, 1109, 1207, 1294
BmrFI CCNGG 2 cut(s) 186, 687
BmrI ACTGGG 1 cut(s) 849
BmsI GCATC 3 cut(s) 243, 246, 660
BmuI ACTGGG 1 cut(s) 849
BpiI GAAGAC 4 cut(s) 102, 165, 291, 1206
Bpu10I CCTNAGC 2 cut(s) 650, 961
Bpu14I TTCGAA 1 cut(s) 919
BpuEI CTTGAG 1 cut(s) 1016
BsaBI GATNNNNATC 1 cut(s) 1196
BsaHI GRCGYC 3 cut(s) 95, 104, 201
BsaJI CCNNGG 3 cut(s) 90, 184, 389
BsaWI WCCGGW 1 cut(s) 406
BsaXI ACNNNNNCTCC 4 cut(s) 16, 46, 130, 160
Bsc4I CCNNNNNNNGG 4 cut(s) 379, 390, 426, 987
Bse1I ACTGG 3 cut(s) 507, 844, 1131
Bse8I GATNNNNATC 1 cut(s) 1196
BseAI TCCGGA 1 cut(s) 406
BseBI CCWGG 2 cut(s) 186, 687
BseDI CCNNGG 3 cut(s) 90, 184, 389
BseGI GGATG 4 cut(s) 116, 745, 812, 901
BseJI GATNNNNATC 1 cut(s) 1196
BseLI CCNNNNNNNGG 4 cut(s) 379, 390, 426, 987
BseMII CTCAG 7 cut(s) 135, 582, 641, 743, 749, 975, 1234
BseNI ACTGG 3 cut(s) 507, 844, 1131
BseRI GAGGAG 2 cut(s) 378, 476
BseXI GCAGC 2 cut(s) 161, 717
BsgI GTGCAG 1 cut(s) 989
BshFI GGCC 5 cut(s) 230, 307, 316, 383, 811
BshNI GGYRCC 1 cut(s) 956
BsiHKAI GWGCWC 3 cut(s) 281, 1013, 1081
BsiSI CCGG 1 cut(s) 407
BslI CCNNNNNNNGG 4 cut(s) 379, 390, 426, 987
BsnI GGCC 5 cut(s) 230, 307, 316, 383, 811
Bsp119I TTCGAA 1 cut(s) 919
Bsp1286I GDGCHC 3 cut(s) 281, 1013, 1081
Bsp13I TCCGGA 1 cut(s) 406
Bsp143I GATC 5 cut(s) 164, 409, 976, 1166, 1234
BspACI CCGC 1 cut(s) 1148
BspANI GGCC 5 cut(s) 230, 307, 316, 383, 811
BspCNI CTCAG 7 cut(s) 134, 583, 642, 744, 748, 974, 1233
BspEI TCCGGA 1 cut(s) 406
BspHI TCATGA 1 cut(s) 1231
BspLI GGNNCC 4 cut(s) 958, 1109, 1207, 1294
BspMAI CTGCAG 1 cut(s) 826
BspPI GGATC 4 cut(s) 159, 417, 971, 1161
BspQI GCTCTTC 1 cut(s) 269
BspT104I TTCGAA 1 cut(s) 919
BspT107I GGYRCC 1 cut(s) 956
BspTI CTTAAG 1 cut(s) 413
BsrI ACTGG 3 cut(s) 507, 844, 1131
BssECI CCNNGG 3 cut(s) 90, 184, 389
BssMI GATC 5 cut(s) 164, 409, 976, 1166, 1234
BssNI GRCGYC 3 cut(s) 95, 104, 201
Bst2UI CCWGG 2 cut(s) 186, 687
Bst4CI ACNGT 3 cut(s) 76, 215, 771
Bst6I CTCTTC 3 cut(s) 269, 783, 1173
BstACI GRCGYC 3 cut(s) 95, 104, 201
BstAFI CTTAAG 1 cut(s) 413
BstBI TTCGAA 1 cut(s) 919
BstC8I GCNNGC 1 cut(s) 232
BstDEI CTNAG 7 cut(s) 121, 591, 650, 735, 752, 961, 1220
BstDSI CCRYGG 1 cut(s) 90
BstENI CCTNNNNNAGG 1 cut(s) 424
BstF5I GGATG 4 cut(s) 116, 745, 812, 901
BstKTI GATC 5 cut(s) 167, 412, 979, 1169, 1237
BstMBI GATC 5 cut(s) 164, 409, 976, 1166, 1234
BstMWI GCNNNNNNNGC 3 cut(s) 101, 231, 313
BstNI CCWGG 2 cut(s) 186, 687
BstSCI CCNGG 2 cut(s) 184, 685
BstSFI CTRYAG 1 cut(s) 822
BstV1I GCAGC 2 cut(s) 161, 717
BstV2I GAAGAC 4 cut(s) 102, 165, 291, 1206
BstX2I RGATCY 3 cut(s) 409, 976, 1166
BstYI RGATCY 3 cut(s) 409, 976, 1166
BsuRI GGCC 5 cut(s) 230, 307, 316, 383, 811
BtgI CCRYGG 1 cut(s) 90
BtsCI GGATG 4 cut(s) 116, 745, 812, 901
BtsI GCAGTG 1 cut(s) 972
BtsIMutI CAGTG 3 cut(s) 129, 972, 1193
Cac8I GCNNGC 1 cut(s) 232
CciI TCATGA 1 cut(s) 1231
Cfr13I GGNCC 3 cut(s) 143, 306, 315
CseI GACGC 5 cut(s) 84, 93, 209, 256, 362
Csp6I GTAC 2 cut(s) 1046, 1134
CviAII CATG 4 cut(s) 64, 987, 1210, 1232
CviQI GTAC 2 cut(s) 1046, 1134
DdeI CTNAG 7 cut(s) 121, 591, 650, 735, 752, 961, 1220
DpnI GATC 5 cut(s) 166, 411, 978, 1168, 1236
DpnII GATC 5 cut(s) 164, 409, 976, 1166, 1234
DraIII CACNNNGTG 1 cut(s) 888
DrdI GACNNNNNNGTC 1 cut(s) 94
DseDI GACNNNNNNGTC 1 cut(s) 94
EaeI YGGCCR 1 cut(s) 228
Eam1104I CTCTTC 3 cut(s) 269, 783, 1173
EarI CTCTTC 3 cut(s) 269, 783, 1173
Ecl136II GAGCTC 2 cut(s) 279, 1011
Eco24I GRGCYC 2 cut(s) 281, 1013
Eco32I GATATC 1 cut(s) 1229
Eco47I GGWCC 1 cut(s) 143
Eco53kI GAGCTC 2 cut(s) 279, 1011
Eco57I CTGAAG 1 cut(s) 1197
EcoICRI GAGCTC 2 cut(s) 279, 1011
EcoNI CCTNNNNNAGG 1 cut(s) 424
EcoO109I RGGNCCY 1 cut(s) 143
EcoRII CCWGG 2 cut(s) 184, 685
EcoRV GATATC 1 cut(s) 1229
EcoT38I GRGCYC 2 cut(s) 281, 1013
FaeI CATG 4 cut(s) 67, 990, 1213, 1235
FatI CATG 4 cut(s) 63, 986, 1209, 1231
FauNDI CATATG 1 cut(s) 800
FblI GTMKAC 1 cut(s) 368
Fnu4HI GCNGC 2 cut(s) 175, 706
FokI GGATG 4 cut(s) 103, 752, 819, 908
FriOI GRGCYC 2 cut(s) 281, 1013
Fsp4HI GCNGC 2 cut(s) 175, 706
FspBI CTAG 1 cut(s) 324
GluI GCNGC 2 cut(s) 175, 706
HaeIII GGCC 5 cut(s) 230, 307, 316, 383, 811
HapII CCGG 1 cut(s) 407
HgaI GACGC 5 cut(s) 84, 93, 209, 256, 362
Hin1I GRCGYC 3 cut(s) 95, 104, 201
Hin1II CATG 4 cut(s) 67, 990, 1213, 1235
HincII GTYRAC 1 cut(s) 369
HindII GTYRAC 1 cut(s) 369
HindIII AAGCTT 2 cut(s) 399, 517
HinfI GANTC 5 cut(s) 337, 879, 916, 1183, 1267
HpaII CCGG 1 cut(s) 407
HphI GGTGA 3 cut(s) 579, 623, 805
Hpy166II GTNNAC 3 cut(s) 369, 758, 767
Hpy188I TCNGA 6 cut(s) 150, 169, 753, 895, 1021, 1202
Hpy188III TCNNGA 9 cut(s) 248, 271, 407, 737, 995, 1057, 1074, 1164, 1232
Hpy8I GTNNAC 3 cut(s) 369, 758, 767
Hpy99I CGWCG 4 cut(s) 100, 103, 109, 1008
HpyCH4III ACNGT 3 cut(s) 76, 215, 771
HpyCH4IV ACGT 1 cut(s) 1142
HpyF10VI GCNNNNNNNGC 3 cut(s) 101, 231, 313
HpyF3I CTNAG 7 cut(s) 121, 591, 650, 735, 752, 961, 1220
HpySE526I ACGT 1 cut(s) 1142
Hsp92I GRCGYC 3 cut(s) 95, 104, 201
Hsp92II CATG 4 cut(s) 67, 990, 1213, 1235
Kpn2I TCCGGA 1 cut(s) 406
Kzo9I GATC 5 cut(s) 164, 409, 976, 1166, 1234
LguI GCTCTTC 1 cut(s) 269
LmnI GCTCC 3 cut(s) 1008, 1113, 1211
Lsp1109I GCAGC 2 cut(s) 161, 717
LweI GCATC 3 cut(s) 243, 246, 660
MaeI CTAG 1 cut(s) 324
MaeII ACGT 1 cut(s) 1142
MaeIII GTNAC 4 cut(s) 76, 585, 880, 1143
MalI GATC 5 cut(s) 166, 411, 978, 1168, 1236
MboI GATC 5 cut(s) 164, 409, 976, 1166, 1234
MboII GAAGA 8 cut(s) 79, 102, 170, 286, 291, 800, 1190, 1206
MfeI CAATTG 2 cut(s) 205, 783
MflI RGATCY 3 cut(s) 409, 976, 1166
MhlI GDGCHC 3 cut(s) 281, 1013, 1081
MlsI TGGCCA 1 cut(s) 230
MluCI AATT 9 cut(s) 53, 205, 319, 553, 700, 715, 729, 783, 949
MluNI TGGCCA 1 cut(s) 230
MlyI GAGTC 3 cut(s) 331, 888, 1192
MmeI TCCRAC 4 cut(s) 411, 476, 873, 886
Mox20I TGGCCA 1 cut(s) 230
MroI TCCGGA 1 cut(s) 406
MscI TGGCCA 1 cut(s) 230
MseI TTAA 3 cut(s) 414, 515, 1092
Msp20I TGGCCA 1 cut(s) 230
MspA1I CMGCKG 1 cut(s) 1150
MspCI CTTAAG 1 cut(s) 413
MspI CCGG 1 cut(s) 407
MspR9I CCNGG 2 cut(s) 186, 687
MunI CAATTG 2 cut(s) 205, 783
MvaI CCWGG 2 cut(s) 186, 687
MwoI GCNNNNNNNGC 3 cut(s) 101, 231, 313
NdeI CATATG 1 cut(s) 800
NdeII GATC 5 cut(s) 164, 409, 976, 1166, 1234
NlaIII CATG 4 cut(s) 67, 990, 1213, 1235
NlaIV GGNNCC 4 cut(s) 958, 1109, 1207, 1294
NmuCI GTSAC 2 cut(s) 585, 880
NspV TTCGAA 1 cut(s) 919
PagI TCATGA 1 cut(s) 1231
PciSI GCTCTTC 1 cut(s) 269
PcsI WCGNNNNNNNCGW 2 cut(s) 104, 365
PfeI GAWTC 2 cut(s) 916, 1267
PflMI CCANNNNNTGG 1 cut(s) 987
PkrI GCNGC 2 cut(s) 176, 707
PleI GAGTC 3 cut(s) 331, 887, 1191
PpsI GAGTC 3 cut(s) 331, 887, 1191
PpuMI RGGWCCY 1 cut(s) 143
Psp124BI GAGCTC 2 cut(s) 281, 1013
Psp5II RGGWCCY 1 cut(s) 143
Psp6I CCWGG 2 cut(s) 184, 685
PspGI CCWGG 2 cut(s) 184, 685
PspN4I GGNNCC 4 cut(s) 958, 1109, 1207, 1294
PspPI GGNCC 3 cut(s) 143, 306, 315
PspPPI RGGWCCY 1 cut(s) 143
PstI CTGCAG 1 cut(s) 826
PsuI RGATCY 3 cut(s) 409, 976, 1166
RsaI GTAC 2 cut(s) 1047, 1135
RsaNI GTAC 2 cut(s) 1046, 1134
SacI GAGCTC 2 cut(s) 281, 1013
SalI GTCGAC 1 cut(s) 367
SapI GCTCTTC 1 cut(s) 269
SaqAI TTAA 3 cut(s) 414, 515, 1092
SatI GCNGC 2 cut(s) 175, 706
Sau3AI GATC 5 cut(s) 164, 409, 976, 1166, 1234
Sau96I GGNCC 3 cut(s) 143, 306, 315
ScaI AGTACT 2 cut(s) 1047, 1135
SchI GAGTC 3 cut(s) 331, 888, 1192
ScrFI CCNGG 2 cut(s) 186, 687
SduI GDGCHC 3 cut(s) 281, 1013, 1081
SfaNI GCATC 3 cut(s) 243, 246, 660
SfcI CTRYAG 1 cut(s) 822
SfiI GGCCNNNNNGGCC 1 cut(s) 313
SfuI TTCGAA 1 cut(s) 919
SinI GGWCC 1 cut(s) 143
SmlI CTYRAG 2 cut(s) 413, 995
SmoI CTYRAG 2 cut(s) 413, 995
Sse9I AATT 9 cut(s) 53, 205, 319, 553, 700, 715, 729, 783, 949
SsiI CCGC 1 cut(s) 1148
SspMI CTAG 1 cut(s) 324
SstI GAGCTC 2 cut(s) 281, 1013
StyD4I CCNGG 2 cut(s) 184, 685
TaaI ACNGT 3 cut(s) 76, 215, 771
TaiI ACGT 1 cut(s) 1145
TaqI TCGA 5 cut(s) 281, 302, 368, 919, 1003
TaqII GACCGA 2 cut(s) 177, 843
TasI AATT 9 cut(s) 53, 205, 319, 553, 700, 715, 729, 783, 949
TatI WGTACW 2 cut(s) 1045, 1133
TfiI GAWTC 2 cut(s) 916, 1267
Tru1I TTAA 3 cut(s) 414, 515, 1092
Tru9I TTAA 3 cut(s) 414, 515, 1092
TscAI CASTG 3 cut(s) 129, 972, 1193
TseFI GTSAC 2 cut(s) 585, 880
TseI GCWGC 2 cut(s) 174, 705
Tsp45I GTSAC 2 cut(s) 585, 880
TspDTI ATGAA 3 cut(s) 80, 102, 837
TspGWI ACGGA 1 cut(s) 1021
TspRI CASTG 3 cut(s) 129, 972, 1193
Van91I CCANNNNNTGG 1 cut(s) 987
Vha464I CTTAAG 1 cut(s) 413
VpaK11BI GGWCC 1 cut(s) 143
XagI CCTNNNNNAGG 1 cut(s) 424
XmiI GTMKAC 1 cut(s) 368
XspI CTAG 1 cut(s) 324
ZrmI AGTACT 2 cut(s) 1047, 1135
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.