MD16G1195700.v1.1

ERG2 and Sigma1 receptor like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
OG0011384
Physical Location & Seq
Reverse (-)
17401210 .. 17402864
1655 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1195700.v1.1.491

Sequence Viewer

Length: 1104 bp
ATGAAATCCGCCCTCTCATCGTCGCCGTCGATGACAACGACATCATCCTCAGTGAAATCGAGCACCACCACCGCCATGGATGACGACAGATCTGAAAACCGCGACAGCTGCTACTACCCAGGATGCCGAAAAGATGCCAACTGCAACTGCGAAATGTGCTTGGCCAGCATCAATGCCACTCTCGATCTCATGCCTTTCAGCATCCAAAAAACCTCGCTCACCAAGTTCTCATCTTCAAGGCCCAAGAACAAGCCAAGTGTCAAACGCACTCCCATCTCTTTCGATGCTTCGATTTTGTCTACACCCACTTCGGGCTCTCCTCCGATTCCTATGTCTCCGGATCTTAAACCGGCTGCAAGATTGAAATCGAAGGAGAAGATTAAGAAGAGGGAGAGAAAAAGGGGTTTTGGGTGTGAAATTTGGAGATTGATTTTGGGTTTAAGCTTGGTGTATGTGGCAAGGTGCGGGTTTTCTAATATGGTTTCGGGGGCTTTAAAACCTATTCTCTCGCCGGAGATTGTGAGAAATGTTGGTGAAAAATCTTGGGTTATGGATGATTTGAATGGCAGGCTGAGGTTCTTGCAGAAAGAGATGCAGGGTCTTGTTCCGGGCAGGGTTTCGAATTGCAGCTATCCTAATTCTATTTGGGATATTAGTCAGGATGGTTTGCTTCTGAGCTCACATTGCACGTTGTACAAATCTGCCATCGAGGAGGTGAGAATATGGGGATGGCCTTTGCAGACAGCTGGGTTGCTCACGAGTGGGTTTTCTTCCCGGTCTTTCACAATCTTATCCGGCAAAGTCACGGAGTGGTCGGATGGAAAGGTTGGCGGCTATGTGATTCGGGAGCCAAACACTTCGTGGGTGCAGAGAACTTGGGGTGCCTCAGCTGTGAAGCTAGATCCGAATACATGGATTCTTGAGTATCGGTGGAGCACGACATTTGATAACCAAAGATTGGTTTCAGCAGCAATAGCCTTCTTTAAGAATATGATCTCCAGGAAGCTTGGAAAGATGCAGCAGAAGTTTTGGATCTTATCTACTTTTGGCAACAACCAGTACCATGAAAGTTCTGCATACTACAACATCAAAATCCCAACCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ERG2_Sigma1R

Protein Analysis

368

Amino Acids

41.02

Weight (kDa)

9.66

Isoelectric Point (pI)

43.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011384)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G05440
fragaria_vesca FvH4_4g16270
malus_domestica MD13G1194900.v1.1 MD16G1195700.v1.1
prunus_persica Prupe.1G015700_v2.0.a1
pyrus_communis pycom03g13620 pycom07g11900 pycom13g16710 pycom16g16490
rosa_chinensis RchiOBHm_Chr4g0415861
rosa_laevigata RLG00000008033
rosa_multiflora Rmu_co8517385.1_g000002 Rmu_sc0002438.1_g000006
rosa_roxburghii Rroxscaffold_5G00359720
rosa_rugosa Rorug04G0137000
rosa_samantha Rh4AG198900 Rh4BG196900 Rh4CG209800 Rh4DG196800
rosa_wichuraiana Rw4G016850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 881
AccB7I CCANNNNNTGG 1 cut(s) 958
AccI GTMKAC 1 cut(s) 299
AccII CGCG 1 cut(s) 102
AccIII TCCGGA 1 cut(s) 337
AciI CCGC 5 cut(s) 9, 72, 100, 465, 831
AclWI GGATC 3 cut(s) 348, 896, 1040
AcoI YGGCCR 1 cut(s) 162
AcsI RAATTY 1 cut(s) 417
AdeI CACNNNGTG 2 cut(s) 810, 861
AfaI GTAC 2 cut(s) 695, 1061
AfiI CCNNNNNNNGG 2 cut(s) 311, 958
AgsI TTSAA 3 cut(s) 237, 364, 562
AjnI CCWGG 2 cut(s) 118, 998
AluBI AGCT 8 cut(s) 108, 444, 630, 678, 746, 890, 898, 1006
AluI AGCT 8 cut(s) 108, 444, 630, 678, 746, 890, 898, 1006
Alw21I GWGCWC 3 cut(s) 65, 680, 938
Alw26I GTCTC 1 cut(s) 339
AlwI GGATC 3 cut(s) 348, 896, 1040
Aor13HI TCCGGA 1 cut(s) 337
AoxI GGCC 3 cut(s) 162, 239, 731
ApeKI GCWGC 5 cut(s) 108, 353, 627, 968, 1018
ApoI RAATTY 1 cut(s) 417
AspS9I GGNCC 1 cut(s) 240
AsuC2I CCSGG 2 cut(s) 609, 775
AsuHPI GGTGA 3 cut(s) 211, 545, 727
AsuII TTCGAA 1 cut(s) 620
BalI TGGCCA 1 cut(s) 164
BanI GGYRCC 1 cut(s) 881
BanII GRGCYC 2 cut(s) 317, 680
BauI CACGAG 1 cut(s) 757
Bbv12I GWGCWC 3 cut(s) 65, 680, 938
BbvCI CCTCAGC 2 cut(s) 572, 886
BbvI GCAGC 5 cut(s) 95, 340, 639, 980, 1030
BccI CCATC 5 cut(s) 281, 656, 713, 723, 812
BceAI ACGGC 1 cut(s) 10
BciT130I CCWGG 2 cut(s) 120, 1000
BcnI CCSGG 2 cut(s) 609, 775
BcoDI GTCTC 1 cut(s) 339
BfaI CTAG 1 cut(s) 899
BglII AGATCT 1 cut(s) 89
BisI GCNGC 6 cut(s) 109, 354, 628, 832, 969, 1019
BlsI GCNGC 6 cut(s) 110, 355, 629, 833, 970, 1020
Bme1390I CCNGG 4 cut(s) 120, 609, 775, 1000
BmgT120I GGNCC 1 cut(s) 240
BmiI GGNNCC 2 cut(s) 849, 883
BmrFI CCNGG 4 cut(s) 120, 609, 775, 1000
BmsI GCATC 7 cut(s) 113, 124, 177, 210, 274, 582, 1005
BpmI CTGGAG 1 cut(s) 982
Bpu10I CCTNAGC 2 cut(s) 572, 886
Bpu14I TTCGAA 1 cut(s) 620
BpuEI CTTGAG 1 cut(s) 941
BpuMI CCSGG 2 cut(s) 609, 775
BsaBI GATNNNNATC 1 cut(s) 364
BsaJI CCNNGG 2 cut(s) 75, 118
BsaWI WCCGGW 1 cut(s) 337
Bsc4I CCNNNNNNNGG 2 cut(s) 311, 958
Bse118I RCCGGY 1 cut(s) 349
Bse1I ACTGG 1 cut(s) 1057
Bse3DI GCAATG 1 cut(s) 682
Bse8I GATNNNNATC 1 cut(s) 364
BseAI TCCGGA 1 cut(s) 337
BseBI CCWGG 2 cut(s) 120, 1000
BseDI CCNNGG 2 cut(s) 75, 118
BseGI GGATG 8 cut(s) 44, 85, 128, 201, 559, 667, 734, 823
BseJI GATNNNNATC 1 cut(s) 364
BseLI CCNNNNNNNGG 2 cut(s) 311, 958
BseMI GCAATG 1 cut(s) 682
BseMII CTCAG 4 cut(s) 63, 563, 665, 900
BseNI ACTGG 1 cut(s) 1057
BseRI GAGGAG 2 cut(s) 309, 725
BseXI GCAGC 5 cut(s) 95, 340, 639, 980, 1030
BseYI CCCAGC 1 cut(s) 746
BsgI GTGCAG 1 cut(s) 887
Bsh1236I CGCG 1 cut(s) 102
BshFI GGCC 3 cut(s) 164, 241, 733
BshNI GGYRCC 1 cut(s) 881
BsiHKAI GWGCWC 3 cut(s) 65, 680, 938
BsiSI CCGG 6 cut(s) 338, 350, 512, 608, 775, 795
BslI CCNNNNNNNGG 2 cut(s) 311, 958
BsmAI GTCTC 1 cut(s) 339
BsnI GGCC 3 cut(s) 164, 241, 733
Bsp119I TTCGAA 1 cut(s) 620
Bsp1286I GDGCHC 4 cut(s) 65, 317, 680, 938
Bsp13I TCCGGA 1 cut(s) 337
Bsp1407I TGTACA 1 cut(s) 693
Bsp143I GATC 6 cut(s) 89, 184, 340, 901, 993, 1032
Bsp19I CCATGG 1 cut(s) 75
BspACI CCGC 5 cut(s) 9, 72, 100, 465, 831
BspANI GGCC 3 cut(s) 164, 241, 733
BspCNI CTCAG 4 cut(s) 62, 564, 666, 899
BspEI TCCGGA 1 cut(s) 337
BspFNI CGCG 1 cut(s) 102
BspLI GGNNCC 2 cut(s) 849, 883
BspPI GGATC 3 cut(s) 348, 896, 1040
BspT104I TTCGAA 1 cut(s) 620
BspT107I GGYRCC 1 cut(s) 881
BsrDI GCAATG 1 cut(s) 682
BsrFI RCCGGY 1 cut(s) 349
BsrGI TGTACA 1 cut(s) 693
BsrI ACTGG 1 cut(s) 1057
BssAI RCCGGY 1 cut(s) 349
BssECI CCNNGG 2 cut(s) 75, 118
BssMI GATC 6 cut(s) 89, 184, 340, 901, 993, 1032
BssSI CACGAG 1 cut(s) 757
BssT1I CCWWGG 1 cut(s) 75
Bst2BI CACGAG 1 cut(s) 757
Bst2UI CCWGG 2 cut(s) 120, 1000
Bst6I CTCTTC 1 cut(s) 380
BstAUI TGTACA 1 cut(s) 693
BstBI TTCGAA 1 cut(s) 620
BstC8I GCNNGC 2 cut(s) 166, 569
BstDEI CTNAG 4 cut(s) 49, 572, 674, 886
BstDSI CCRYGG 1 cut(s) 75
BstF5I GGATG 8 cut(s) 44, 85, 128, 201, 559, 667, 734, 823
BstFNI CGCG 1 cut(s) 102
BstKTI GATC 6 cut(s) 92, 187, 343, 904, 996, 1035
BstMAI GTCTC 1 cut(s) 339
BstMBI GATC 6 cut(s) 89, 184, 340, 901, 993, 1032
BstMWI GCNNNNNNNGC 5 cut(s) 108, 156, 165, 684, 974
BstNI CCWGG 2 cut(s) 120, 1000
BstSCI CCNGG 4 cut(s) 118, 607, 773, 998
BstUI CGCG 1 cut(s) 102
BstV1I GCAGC 5 cut(s) 95, 340, 639, 980, 1030
BstX2I RGATCY 4 cut(s) 89, 340, 901, 1032
BstXI CCANNNNNNTGG 1 cut(s) 76
BstYI RGATCY 4 cut(s) 89, 340, 901, 1032
BsuRI GGCC 3 cut(s) 164, 241, 733
BtgI CCRYGG 1 cut(s) 75
BtsCI GGATG 8 cut(s) 44, 85, 128, 201, 559, 667, 734, 823
BtsIMutI CAGTG 1 cut(s) 57
Cac8I GCNNGC 2 cut(s) 166, 569
Cfr10I RCCGGY 1 cut(s) 349
Cfr13I GGNCC 1 cut(s) 240
Csp6I GTAC 2 cut(s) 694, 1060
CviAII CATG 4 cut(s) 76, 190, 912, 1064
CviQI GTAC 2 cut(s) 694, 1060
DdeI CTNAG 4 cut(s) 49, 572, 674, 886
DpnI GATC 6 cut(s) 91, 186, 342, 903, 995, 1034
DpnII GATC 6 cut(s) 89, 184, 340, 901, 993, 1032
DraI TTTAAA 1 cut(s) 495
DraIII CACNNNGTG 2 cut(s) 810, 861
EaeI YGGCCR 1 cut(s) 162
Eam1104I CTCTTC 1 cut(s) 380
EarI CTCTTC 1 cut(s) 380
Ecl136II GAGCTC 1 cut(s) 678
Eco130I CCWWGG 1 cut(s) 75
Eco24I GRGCYC 2 cut(s) 317, 680
Eco53kI GAGCTC 1 cut(s) 678
EcoICRI GAGCTC 1 cut(s) 678
EcoRII CCWGG 2 cut(s) 118, 998
EcoT14I CCWWGG 1 cut(s) 75
EcoT38I GRGCYC 2 cut(s) 317, 680
ErhI CCWWGG 1 cut(s) 75
FaeI CATG 4 cut(s) 79, 193, 915, 1067
FatI CATG 4 cut(s) 75, 189, 911, 1063
FauI CCCGC 1 cut(s) 458
FblI GTMKAC 1 cut(s) 299
Fnu4HI GCNGC 6 cut(s) 109, 354, 628, 832, 969, 1019
FokI GGATG 8 cut(s) 31, 92, 135, 188, 566, 674, 741, 830
FriOI GRGCYC 2 cut(s) 317, 680
Fsp4HI GCNGC 6 cut(s) 109, 354, 628, 832, 969, 1019
FspBI CTAG 1 cut(s) 899
GluI GCNGC 6 cut(s) 109, 354, 628, 832, 969, 1019
GsaI CCCAGC 1 cut(s) 750
GsuI CTGGAG 1 cut(s) 982
HaeIII GGCC 3 cut(s) 164, 241, 733
HapII CCGG 6 cut(s) 338, 350, 512, 608, 775, 795
Hin1II CATG 4 cut(s) 79, 193, 915, 1067
HindIII AAGCTT 2 cut(s) 442, 1004
HinfI GANTC 3 cut(s) 325, 841, 916
HpaII CCGG 6 cut(s) 338, 350, 512, 608, 775, 795
HphI GGTGA 3 cut(s) 211, 545, 727
Hpy166II GTNNAC 1 cut(s) 300
Hpy188I TCNGA 5 cut(s) 94, 324, 675, 817, 906
Hpy188III TCNNGA 6 cut(s) 182, 338, 659, 757, 845, 920
Hpy8I GTNNAC 1 cut(s) 300
Hpy99I CGWCG 2 cut(s) 25, 31
HpyAV CCTTC 2 cut(s) 364, 988
HpyCH4IV ACGT 1 cut(s) 689
HpyF10VI GCNNNNNNNGC 5 cut(s) 108, 156, 165, 684, 974
HpyF3I CTNAG 4 cut(s) 49, 572, 674, 886
HpySE526I ACGT 1 cut(s) 689
Hsp92II CATG 4 cut(s) 79, 193, 915, 1067
Kpn2I TCCGGA 1 cut(s) 337
Kzo9I GATC 6 cut(s) 89, 184, 340, 901, 993, 1032
LmnI GCTCC 2 cut(s) 847, 933
Lsp1109I GCAGC 5 cut(s) 95, 340, 639, 980, 1030
LweI GCATC 7 cut(s) 113, 124, 177, 210, 274, 582, 1005
MaeI CTAG 1 cut(s) 899
MaeII ACGT 1 cut(s) 689
MaeIII GTNAC 1 cut(s) 802
MalI GATC 6 cut(s) 91, 186, 342, 903, 995, 1034
MboI GATC 6 cut(s) 89, 184, 340, 901, 993, 1032
MboII GAAGA 4 cut(s) 225, 388, 397, 762
MflI RGATCY 4 cut(s) 89, 340, 901, 1032
MhlI GDGCHC 4 cut(s) 65, 317, 680, 938
MlsI TGGCCA 1 cut(s) 164
MluCI AATT 3 cut(s) 417, 622, 637
MluNI TGGCCA 1 cut(s) 164
MmeI TCCRAC 1 cut(s) 795
MnlI CCTC 9 cut(s) 23, 58, 223, 330, 381, 567, 703, 706, 895
Mox20I TGGCCA 1 cut(s) 164
MroI TCCGGA 1 cut(s) 337
MscI TGGCCA 1 cut(s) 164
MseI TTAA 5 cut(s) 345, 381, 440, 494, 984
MslI CAYNNNNRTG 1 cut(s) 74
Msp20I TGGCCA 1 cut(s) 164
MspA1I CMGCKG 3 cut(s) 108, 746, 890
MspI CCGG 6 cut(s) 338, 350, 512, 608, 775, 795
MspR9I CCNGG 4 cut(s) 120, 609, 775, 1000
MvaI CCWGG 2 cut(s) 120, 1000
MvnI CGCG 1 cut(s) 102
MwoI GCNNNNNNNGC 5 cut(s) 108, 156, 165, 684, 974
NciI CCSGG 2 cut(s) 609, 775
NcoI CCATGG 1 cut(s) 75
NdeII GATC 6 cut(s) 89, 184, 340, 901, 993, 1032
NlaIII CATG 4 cut(s) 79, 193, 915, 1067
NlaIV GGNNCC 2 cut(s) 849, 883
NmuCI GTSAC 1 cut(s) 802
NspV TTCGAA 1 cut(s) 620
PcsI WCGNNNNNNNCGW 2 cut(s) 26, 35
PfeI GAWTC 3 cut(s) 325, 841, 916
PflMI CCANNNNNTGG 1 cut(s) 958
PfoI TCCNGGA 1 cut(s) 998
PkrI GCNGC 6 cut(s) 110, 355, 629, 833, 970, 1020
Psp124BI GAGCTC 1 cut(s) 680
Psp6I CCWGG 2 cut(s) 118, 998
PspFI CCCAGC 1 cut(s) 746
PspGI CCWGG 2 cut(s) 118, 998
PspN4I GGNNCC 2 cut(s) 849, 883
PspPI GGNCC 1 cut(s) 240
PsuI RGATCY 4 cut(s) 89, 340, 901, 1032
PvuII CAGCTG 3 cut(s) 108, 746, 890
RsaI GTAC 2 cut(s) 695, 1061
RsaNI GTAC 2 cut(s) 694, 1060
RseI CAYNNNNRTG 1 cut(s) 74
SacI GAGCTC 1 cut(s) 680
SaqAI TTAA 5 cut(s) 345, 381, 440, 494, 984
SatI GCNGC 6 cut(s) 109, 354, 628, 832, 969, 1019
Sau3AI GATC 6 cut(s) 89, 184, 340, 901, 993, 1032
Sau96I GGNCC 1 cut(s) 240
ScrFI CCNGG 4 cut(s) 120, 609, 775, 1000
SduI GDGCHC 4 cut(s) 65, 317, 680, 938
SfaNI GCATC 7 cut(s) 113, 124, 177, 210, 274, 582, 1005
SfuI TTCGAA 1 cut(s) 620
SmiMI CAYNNNNRTG 1 cut(s) 74
SmlI CTYRAG 1 cut(s) 920
SmoI CTYRAG 1 cut(s) 920
Sse9I AATT 3 cut(s) 417, 622, 637
SsiI CCGC 5 cut(s) 9, 72, 100, 465, 831
SspMI CTAG 1 cut(s) 899
SstI GAGCTC 1 cut(s) 680
StyD4I CCNGG 4 cut(s) 118, 607, 773, 998
StyI CCWWGG 1 cut(s) 75
TaiI ACGT 1 cut(s) 692
TaqI TCGA 8 cut(s) 29, 59, 183, 282, 290, 368, 620, 708
TasI AATT 3 cut(s) 417, 622, 637
TatI WGTACW 1 cut(s) 693
TauI GCSGC 1 cut(s) 834
TfiI GAWTC 3 cut(s) 325, 841, 916
Tru1I TTAA 5 cut(s) 345, 381, 440, 494, 984
Tru9I TTAA 5 cut(s) 345, 381, 440, 494, 984
TscAI CASTG 1 cut(s) 57
TseFI GTSAC 1 cut(s) 802
TseI GCWGC 5 cut(s) 108, 353, 627, 968, 1018
Tsp45I GTSAC 1 cut(s) 802
TspDTI ATGAA 2 cut(s) 17, 1080
TspGWI ACGGA 1 cut(s) 821
TspRI CASTG 1 cut(s) 57
Van91I CCANNNNNTGG 1 cut(s) 958
XapI RAATTY 1 cut(s) 417
XcmI CCANNNNNNNNNTGG 2 cut(s) 73, 858
XmiI GTMKAC 1 cut(s) 299
XspI CTAG 1 cut(s) 899
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.