Rmu_co8517385.1_g000002

ERG2 and Sigma1 receptor like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8517385.1
OG0011384
Physical Location & Seq
Reverse (-)
3257 .. 4579
1323 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8517385.1_g000002.1.cds

Sequence Viewer

Length: 1107 bp
atgaagaaaaccgttaccacaccgaccacggcgtcgtcttcatcatcctcagtgaagtcaagcagcacaggtcctccgatggaggaagaccgatccgaaagctgctactacccaggttgcagaaaagacgccaattgcaattgtgatatgtgcttggccagcatcaatgccactcttgatttgatgccctttagcgtccagaagagctcgatgacaaagttctcgtcttcgaggcccgatcggcccaattctagtgttgagcagactcccatttcttttgacgcttcggttttgtcgaccccaatatcgacctctcctcggtttcaagcttctccggatcttaagccctctgcaagattggattttgagcagagtgtggtggaaaaagaggaggggaggaaatggggttttgggtgggattgttggaaactggttctgggtttaagcttggtttatgtggtggtttatgggttttattctaatttggcttctggggttttgaaacctgttttgtcacctgagattgtgagaaatgctggtgagaaatcttgggttgtgcaagatttgaatgggaggctgaggttcttgcagaaagagatgcagggtcttgttcctggcaaggtttcaaattgcagctatcctaattctctttgggaaattactcaggatggtttgcttctgagttcacattgtaaactgttcaaatctgcaattgaagaggtgagcatatggggatggcctttgcagactgcagggttgctcacaactgggttttcgtctcggtcttacacaatcttatcaggcagagtcacagagtggtcagatggaaaggttggctatgtgattcgaaaggaaaactcctcttgggtgcaaaggaattggggtgcctcagcagtgcagttagatcccaatacatggcttcttgagtatcgacggagttcagtatctcacaaccaaagattggtttcagcagtactctctttcttgaaatataaactttcaagagcacttggaaagattaagcagaagttttggctcccctctacttttggaaataaccagtactatgaagttactgctgaatataacatcaagatcccaacctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ERG2_Sigma1R

Protein Analysis

368

Amino Acids

41.07

Weight (kDa)

9.13

Isoelectric Point (pI)

43.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011384)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G05440
fragaria_vesca FvH4_4g16270
malus_domestica MD13G1194900.v1.1 MD16G1195700.v1.1
prunus_persica Prupe.1G015700_v2.0.a1
pyrus_communis pycom03g13620 pycom07g11900 pycom13g16710 pycom16g16490
rosa_chinensis RchiOBHm_Chr4g0415861
rosa_laevigata RLG00000008033
rosa_multiflora Rmu_co8517385.1_g000002 Rmu_sc0002438.1_g000006
rosa_roxburghii Rroxscaffold_5G00359720
rosa_rugosa Rorug04G0137000
rosa_samantha Rh4AG198900 Rh4BG196900 Rh4CG209800 Rh4DG196800
rosa_wichuraiana Rw4G016850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 31
AccB1I GGYRCC 1 cut(s) 884
AccB7I CCANNNNNTGG 2 cut(s) 915, 961
AccI GTMKAC 1 cut(s) 296
AccIII TCCGGA 1 cut(s) 334
AclWI GGATC 4 cut(s) 87, 345, 899, 1090
AcoI YGGCCR 1 cut(s) 156
AcyI GRCGYC 2 cut(s) 32, 129
AdeI CACNNNGTG 1 cut(s) 816
AfaI GTAC 2 cut(s) 975, 1064
AfiI CCNNNNNNNGG 3 cut(s) 318, 915, 961
AflII CTTAAG 1 cut(s) 341
AgsI TTSAA 8 cut(s) 326, 502, 568, 627, 703, 716, 988, 1002
AjnI CCWGG 2 cut(s) 112, 613
AluBI AGCT 5 cut(s) 102, 207, 329, 447, 636
AluI AGCT 5 cut(s) 102, 207, 329, 447, 636
Alw21I GWGCWC 2 cut(s) 209, 1009
Alw26I GTCTC 1 cut(s) 783
AlwI GGATC 4 cut(s) 87, 345, 899, 1090
Aor13HI TCCGGA 1 cut(s) 334
AoxI GGCC 4 cut(s) 156, 233, 242, 737
ApeKI GCWGC 3 cut(s) 63, 102, 633
ArsI GACNNNNNNTTYG 2 cut(s) 209, 241
AspS9I GGNCC 3 cut(s) 71, 234, 243
AsuHPI GGTGA 3 cut(s) 507, 551, 733
AsuII TTCGAA 1 cut(s) 847
AvaII GGWCC 1 cut(s) 71
BalI TGGCCA 1 cut(s) 158
BanI GGYRCC 1 cut(s) 884
BanII GRGCYC 1 cut(s) 209
BbsI GAAGAC 3 cut(s) 30, 93, 219
Bbv12I GWGCWC 2 cut(s) 209, 1009
BbvCI CCTCAGC 2 cut(s) 578, 889
BbvI GCAGC 3 cut(s) 75, 89, 645
BccI CCATC 4 cut(s) 73, 662, 729, 818
BceAI ACGGC 1 cut(s) 45
BciT130I CCWGG 2 cut(s) 114, 615
BcoDI GTCTC 1 cut(s) 783
BfaI CTAG 1 cut(s) 252
BfmI CTRYAG 1 cut(s) 750
BfrI CTTAAG 1 cut(s) 341
BglI GCCNNNNNGGC 1 cut(s) 241
BisI GCNGC 3 cut(s) 64, 103, 634
BlsI GCNGC 3 cut(s) 65, 104, 635
BmcAI AGTACT 2 cut(s) 975, 1064
Bme1390I CCNGG 2 cut(s) 114, 615
Bme18I GGWCC 1 cut(s) 71
BmgT120I GGNCC 3 cut(s) 71, 234, 243
BmiI GGNNCC 2 cut(s) 886, 1037
BmrFI CCNGG 2 cut(s) 114, 615
BmrI ACTGGG 1 cut(s) 777
BmsI GCATC 3 cut(s) 171, 174, 588
BmuI ACTGGG 1 cut(s) 777
BpiI GAAGAC 3 cut(s) 30, 93, 219
Bpu10I CCTNAGC 2 cut(s) 578, 889
Bpu14I TTCGAA 1 cut(s) 847
BpuEI CTTGAG 1 cut(s) 944
BsaHI GRCGYC 2 cut(s) 32, 129
BsaJI CCNNGG 3 cut(s) 27, 112, 317
BsaWI WCCGGW 1 cut(s) 334
BsaXI ACNNNNNCTCC 2 cut(s) 58, 88
Bsc4I CCNNNNNNNGG 3 cut(s) 318, 915, 961
Bse1I ACTGG 3 cut(s) 435, 772, 1060
BseAI TCCGGA 1 cut(s) 334
BseBI CCWGG 2 cut(s) 114, 615
BseDI CCNNGG 3 cut(s) 27, 112, 317
BseGI GGATG 3 cut(s) 44, 673, 740
BseLI CCNNNNNNNGG 3 cut(s) 318, 915, 961
BseMII CTCAG 6 cut(s) 63, 510, 569, 671, 677, 903
BseNI ACTGG 3 cut(s) 435, 772, 1060
BseRI GAGGAG 3 cut(s) 306, 404, 850
BseXI GCAGC 3 cut(s) 75, 89, 645
BsgI GTGCAG 1 cut(s) 917
Bsh1285I CGRYCG 1 cut(s) 241
BshFI GGCC 4 cut(s) 158, 235, 244, 739
BshNI GGYRCC 1 cut(s) 884
BsiEI CGRYCG 1 cut(s) 241
BsiHKAI GWGCWC 2 cut(s) 209, 1009
BsiSI CCGG 1 cut(s) 335
BslI CCNNNNNNNGG 3 cut(s) 318, 915, 961
BsmAI GTCTC 1 cut(s) 783
BsmBI CGTCTC 1 cut(s) 783
BsnI GGCC 4 cut(s) 158, 235, 244, 739
Bsp119I TTCGAA 1 cut(s) 847
Bsp1286I GDGCHC 2 cut(s) 209, 1009
Bsp13I TCCGGA 1 cut(s) 334
Bsp143I GATC 5 cut(s) 92, 238, 337, 904, 1095
BspANI GGCC 4 cut(s) 158, 235, 244, 739
BspCNI CTCAG 6 cut(s) 62, 511, 570, 672, 676, 902
BspEI TCCGGA 1 cut(s) 334
BspLI GGNNCC 2 cut(s) 886, 1037
BspMAI CTGCAG 1 cut(s) 754
BspPI GGATC 4 cut(s) 87, 345, 899, 1090
BspQI GCTCTTC 1 cut(s) 197
BspT104I TTCGAA 1 cut(s) 847
BspT107I GGYRCC 1 cut(s) 884
BspTI CTTAAG 1 cut(s) 341
BsrI ACTGG 3 cut(s) 435, 772, 1060
BssECI CCNNGG 3 cut(s) 27, 112, 317
BssMI GATC 5 cut(s) 92, 238, 337, 904, 1095
BssNI GRCGYC 2 cut(s) 32, 129
Bst2UI CCWGG 2 cut(s) 114, 615
Bst4CI ACNGT 2 cut(s) 13, 699
Bst6I CTCTTC 2 cut(s) 197, 711
BstACI GRCGYC 2 cut(s) 32, 129
BstAFI CTTAAG 1 cut(s) 341
BstBI TTCGAA 1 cut(s) 847
BstC8I GCNNGC 1 cut(s) 160
BstDEI CTNAG 6 cut(s) 49, 519, 578, 663, 680, 889
BstDSI CCRYGG 1 cut(s) 27
BstF5I GGATG 3 cut(s) 44, 673, 740
BstKTI GATC 5 cut(s) 95, 241, 340, 907, 1098
BstMAI GTCTC 1 cut(s) 783
BstMBI GATC 5 cut(s) 92, 238, 337, 904, 1095
BstMCI CGRYCG 1 cut(s) 241
BstMWI GCNNNNNNNGC 2 cut(s) 159, 241
BstNI CCWGG 2 cut(s) 114, 615
BstSCI CCNGG 2 cut(s) 112, 613
BstSFI CTRYAG 1 cut(s) 750
BstV1I GCAGC 3 cut(s) 75, 89, 645
BstV2I GAAGAC 3 cut(s) 30, 93, 219
BstX2I RGATCY 3 cut(s) 337, 904, 1095
BstYI RGATCY 3 cut(s) 337, 904, 1095
BsuRI GGCC 4 cut(s) 158, 235, 244, 739
BtgI CCRYGG 1 cut(s) 27
BtsCI GGATG 3 cut(s) 44, 673, 740
BtsI GCAGTG 1 cut(s) 900
BtsIMutI CAGTG 2 cut(s) 57, 900
Cac8I GCNNGC 1 cut(s) 160
Cfr13I GGNCC 3 cut(s) 71, 234, 243
CseI GACGC 4 cut(s) 21, 137, 184, 290
Csp6I GTAC 2 cut(s) 974, 1063
CviAII CATG 1 cut(s) 915
CviQI GTAC 2 cut(s) 974, 1063
DdeI CTNAG 6 cut(s) 49, 519, 578, 663, 680, 889
DpnI GATC 5 cut(s) 94, 240, 339, 906, 1097
DpnII GATC 5 cut(s) 92, 238, 337, 904, 1095
DraIII CACNNNGTG 1 cut(s) 816
DrdI GACNNNNNNGTC 1 cut(s) 31
DseDI GACNNNNNNGTC 1 cut(s) 31
EaeI YGGCCR 1 cut(s) 156
Eam1104I CTCTTC 2 cut(s) 197, 711
EarI CTCTTC 2 cut(s) 197, 711
Ecl136II GAGCTC 1 cut(s) 207
Eco24I GRGCYC 1 cut(s) 209
Eco47I GGWCC 1 cut(s) 71
Eco53kI GAGCTC 1 cut(s) 207
EcoICRI GAGCTC 1 cut(s) 207
EcoO109I RGGNCCY 1 cut(s) 71
EcoRII CCWGG 2 cut(s) 112, 613
EcoT38I GRGCYC 1 cut(s) 209
Esp3I CGTCTC 1 cut(s) 783
FaeI CATG 1 cut(s) 918
FatI CATG 1 cut(s) 914
FauNDI CATATG 1 cut(s) 728
FblI GTMKAC 1 cut(s) 296
Fnu4HI GCNGC 3 cut(s) 64, 103, 634
FokI GGATG 3 cut(s) 31, 680, 747
FriOI GRGCYC 1 cut(s) 209
Fsp4HI GCNGC 3 cut(s) 64, 103, 634
FspBI CTAG 1 cut(s) 252
GluI GCNGC 3 cut(s) 64, 103, 634
HaeIII GGCC 4 cut(s) 158, 235, 244, 739
HapII CCGG 1 cut(s) 335
HgaI GACGC 4 cut(s) 21, 137, 184, 290
Hin1I GRCGYC 2 cut(s) 32, 129
Hin1II CATG 1 cut(s) 918
HincII GTYRAC 1 cut(s) 297
HindII GTYRAC 1 cut(s) 297
HindIII AAGCTT 2 cut(s) 327, 445
HinfI GANTC 3 cut(s) 265, 807, 844
HpaII CCGG 1 cut(s) 335
HphI GGTGA 3 cut(s) 507, 551, 733
Hpy166II GTNNAC 3 cut(s) 297, 686, 695
Hpy188I TCNGA 4 cut(s) 78, 97, 681, 823
Hpy188III TCNNGA 8 cut(s) 176, 199, 335, 665, 923, 985, 1002, 1093
Hpy8I GTNNAC 3 cut(s) 297, 686, 695
Hpy99I CGWCG 2 cut(s) 37, 936
HpyCH4III ACNGT 2 cut(s) 13, 699
HpyF10VI GCNNNNNNNGC 2 cut(s) 159, 241
HpyF3I CTNAG 6 cut(s) 49, 519, 578, 663, 680, 889
Hsp92I GRCGYC 2 cut(s) 32, 129
Hsp92II CATG 1 cut(s) 918
Kpn2I TCCGGA 1 cut(s) 334
Kzo9I GATC 5 cut(s) 92, 238, 337, 904, 1095
LguI GCTCTTC 1 cut(s) 197
LmnI GCTCC 1 cut(s) 1041
Lsp1109I GCAGC 3 cut(s) 75, 89, 645
LweI GCATC 3 cut(s) 171, 174, 588
MaeI CTAG 1 cut(s) 252
MaeIII GTNAC 4 cut(s) 13, 513, 808, 1072
MalI GATC 5 cut(s) 94, 240, 339, 906, 1097
MboI GATC 5 cut(s) 92, 238, 337, 904, 1095
MboII GAAGA 6 cut(s) 16, 30, 98, 214, 219, 728
MfeI CAATTG 3 cut(s) 133, 139, 711
MflI RGATCY 3 cut(s) 337, 904, 1095
MhlI GDGCHC 2 cut(s) 209, 1009
MlsI TGGCCA 1 cut(s) 158
MluCI AATT 9 cut(s) 133, 139, 247, 481, 628, 643, 657, 711, 877
MluNI TGGCCA 1 cut(s) 158
MlyI GAGTC 2 cut(s) 259, 816
MmeI TCCRAC 1 cut(s) 404
Mox20I TGGCCA 1 cut(s) 158
MroI TCCGGA 1 cut(s) 334
MscI TGGCCA 1 cut(s) 158
MseI TTAA 3 cut(s) 342, 443, 1020
Msp20I TGGCCA 1 cut(s) 158
MspCI CTTAAG 1 cut(s) 341
MspI CCGG 1 cut(s) 335
MspR9I CCNGG 2 cut(s) 114, 615
MunI CAATTG 3 cut(s) 133, 139, 711
MvaI CCWGG 2 cut(s) 114, 615
MwoI GCNNNNNNNGC 2 cut(s) 159, 241
NdeI CATATG 1 cut(s) 728
NdeII GATC 5 cut(s) 92, 238, 337, 904, 1095
NlaIII CATG 1 cut(s) 918
NlaIV GGNNCC 2 cut(s) 886, 1037
NmuCI GTSAC 2 cut(s) 513, 808
NspV TTCGAA 1 cut(s) 847
PciSI GCTCTTC 1 cut(s) 197
PcsI WCGNNNNNNNCGW 1 cut(s) 293
PfeI GAWTC 1 cut(s) 844
PflMI CCANNNNNTGG 2 cut(s) 915, 961
PkrI GCNGC 3 cut(s) 65, 104, 635
Ple19I CGATCG 1 cut(s) 241
PleI GAGTC 2 cut(s) 259, 815
PpsI GAGTC 2 cut(s) 259, 815
PpuMI RGGWCCY 1 cut(s) 71
Psp124BI GAGCTC 1 cut(s) 209
Psp5II RGGWCCY 1 cut(s) 71
Psp6I CCWGG 2 cut(s) 112, 613
PspGI CCWGG 2 cut(s) 112, 613
PspN4I GGNNCC 2 cut(s) 886, 1037
PspPI GGNCC 3 cut(s) 71, 234, 243
PspPPI RGGWCCY 1 cut(s) 71
PstI CTGCAG 1 cut(s) 754
PsuI RGATCY 3 cut(s) 337, 904, 1095
PvuI CGATCG 1 cut(s) 241
RsaI GTAC 2 cut(s) 975, 1064
RsaNI GTAC 2 cut(s) 974, 1063
SacI GAGCTC 1 cut(s) 209
SalI GTCGAC 1 cut(s) 295
SapI GCTCTTC 1 cut(s) 197
SaqAI TTAA 3 cut(s) 342, 443, 1020
SatI GCNGC 3 cut(s) 64, 103, 634
Sau3AI GATC 5 cut(s) 92, 238, 337, 904, 1095
Sau96I GGNCC 3 cut(s) 71, 234, 243
ScaI AGTACT 2 cut(s) 975, 1064
SchI GAGTC 2 cut(s) 259, 816
ScrFI CCNGG 2 cut(s) 114, 615
SduI GDGCHC 2 cut(s) 209, 1009
SfaNI GCATC 3 cut(s) 171, 174, 588
SfcI CTRYAG 1 cut(s) 750
SfiI GGCCNNNNNGGCC 1 cut(s) 241
SfuI TTCGAA 1 cut(s) 847
SinI GGWCC 1 cut(s) 71
SmlI CTYRAG 2 cut(s) 341, 923
SmoI CTYRAG 2 cut(s) 341, 923
Sse9I AATT 9 cut(s) 133, 139, 247, 481, 628, 643, 657, 711, 877
SspMI CTAG 1 cut(s) 252
SstI GAGCTC 1 cut(s) 209
StyD4I CCNGG 2 cut(s) 112, 613
TaaI ACNGT 2 cut(s) 13, 699
TaqI TCGA 6 cut(s) 209, 230, 296, 308, 847, 931
TaqII GACCGA 2 cut(s) 105, 771
TasI AATT 9 cut(s) 133, 139, 247, 481, 628, 643, 657, 711, 877
TatI WGTACW 2 cut(s) 973, 1062
TfiI GAWTC 1 cut(s) 844
Tru1I TTAA 3 cut(s) 342, 443, 1020
Tru9I TTAA 3 cut(s) 342, 443, 1020
TscAI CASTG 2 cut(s) 57, 900
TseFI GTSAC 2 cut(s) 513, 808
TseI GCWGC 3 cut(s) 63, 102, 633
Tsp45I GTSAC 2 cut(s) 513, 808
TspDTI ATGAA 3 cut(s) 17, 30, 1083
TspGWI ACGGA 1 cut(s) 949
TspRI CASTG 2 cut(s) 57, 900
Van91I CCANNNNNTGG 2 cut(s) 915, 961
Vha464I CTTAAG 1 cut(s) 341
VpaK11BI GGWCC 1 cut(s) 71
XmiI GTMKAC 1 cut(s) 296
XspI CTAG 1 cut(s) 252
ZrmI AGTACT 2 cut(s) 975, 1064
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.