pycom13g16710

ERG2 and Sigma1 receptor like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0011384
Physical Location & Seq
Reverse (-)
12454301 .. 12455718
1418 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g16710.1

Sequence Viewer

Length: 1023 bp
ATGAATGCTTCAAAGACCATGTCCACAAAACAAAGCCTCTCTCCTAAACCCCGAAACGCTCAAGCAGCCATGAAATCCGCCCTCTCATCGTCGCCATCAATGACAACGACATCATCCTCAGTGAAATCAAGCACCACCACCGCCATGGACGACGACAGATCTGAAAATCGCGACAGCTGCTACTACCCAGGATGCCGGAAAGATGCCAACTGCAACTGCGAAATGTGCTTGGCCAGCATCAATGCCACTCTCGATCTCATGCCTTTCAGCATCCAGAAAAGCCCGCTCACCAAATTCTCATCTTCAAGGCCTAAGAACAACCCAAGTGTTGAACGCACTCCCATCTCTTTCGATGCTTCGATTTTGTCCACACCCACGTCGGGCTCTCCTCCGATTCCTGTGTCTCCGGAGCTTAAACCGGCTGCAAGATTGAAATCGAAGAAGAAGACTAAGAAGATGGAGAGAAAATGGGGTTTTGGGTGTGAGTTTTGGAGATTGATTTTGGGTTTAATCTTGGTTTATCTGGCGATGTGCGGGTTTTATAAGATGGTTTCGGGTGCATTGAAACCAATTCTGTCACCGGAGATGGTGAGAAATGTTAGTGAAAAATCTTGGGTTGTGGATGATATGAATGGCAGGCTGAGGTTCTTGCAGAAAGAGATGCAAGGTCTTGTTCCTGGGAGGGTTTCGAATTGCAGCTATCCTAGTTCTATATGGGACATTAATCAGTGGTCGGATGGAAAGGTCGGTAGCTATGTGATTCGGAAGCCAAACACTTCCTGGGTGCGGAGAAGTTGGGGTGCCTCAGCTGTGCAGCTAGATCCCAATACATGGATTCTTGAGTACCGGTGGAGCACGATATGCGATAACCAAAGATTGGTTTCAGCAGCACTAGCGTTTTTGAAGAATATGATCTCAAGAATTCTTGGAAAGATGCAGCAGAAATTTTGGCTCTTATCTACTTTTGGCAACAACCAGTACCTTGAAACTAGTGCAAATTACAATATCGAAATCCCAACCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ERG2_Sigma1R

Protein Analysis

341

Amino Acids

38.05

Weight (kDa)

9.69

Isoelectric Point (pI)

49.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011384)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G05440
fragaria_vesca FvH4_4g16270
malus_domestica MD13G1194900.v1.1 MD16G1195700.v1.1
prunus_persica Prupe.1G015700_v2.0.a1
pyrus_communis pycom03g13620 pycom07g11900 pycom13g16710 pycom16g16490
rosa_chinensis RchiOBHm_Chr4g0415861
rosa_laevigata RLG00000008033
rosa_multiflora Rmu_co8517385.1_g000002 Rmu_sc0002438.1_g000006
rosa_roxburghii Rroxscaffold_5G00359720
rosa_rugosa Rorug04G0137000
rosa_samantha Rh4AG198900 Rh4BG196900 Rh4CG209800 Rh4DG196800
rosa_wichuraiana Rw4G016850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 543
AccB1I GGYRCC 1 cut(s) 800
AccB7I CCANNNNNTGG 2 cut(s) 831, 877
AccBSI CCGCTC 1 cut(s) 286
AccII CGCG 1 cut(s) 171
AccIII TCCGGA 1 cut(s) 406
AciI CCGC 5 cut(s) 78, 141, 284, 534, 787
AclWI GGATC 1 cut(s) 815
AcoI YGGCCR 1 cut(s) 231
AcsI RAATTY 3 cut(s) 293, 921, 944
AfaI GTAC 2 cut(s) 845, 980
AfiI CCNNNNNNNGG 4 cut(s) 380, 786, 831, 877
AgeI ACCGGT 1 cut(s) 846
AgsI TTSAA 7 cut(s) 12, 306, 332, 433, 565, 904, 986
AhlI ACTAGT 1 cut(s) 989
AjiI CACGTC 1 cut(s) 378
AjnI CCWGG 3 cut(s) 187, 676, 779
AluBI AGCT 6 cut(s) 177, 412, 699, 753, 809, 817
AluI AGCT 6 cut(s) 177, 412, 699, 753, 809, 817
Alw21I GWGCWC 1 cut(s) 857
Alw26I GTCTC 1 cut(s) 408
AlwI GGATC 1 cut(s) 815
Aor13HI TCCGGA 1 cut(s) 406
AoxI GGCC 2 cut(s) 231, 308
ApeKI GCWGC 7 cut(s) 65, 177, 422, 696, 814, 887, 937
ApoI RAATTY 3 cut(s) 293, 921, 944
ArsI GACNNNNNNTTYG 1 cut(s) 37
AseI ATTAAT 1 cut(s) 723
AsiGI ACCGGT 1 cut(s) 846
AsuHPI GGTGA 3 cut(s) 280, 570, 601
AsuII TTCGAA 1 cut(s) 689
BalI TGGCCA 1 cut(s) 233
BanI GGYRCC 1 cut(s) 800
BanII GRGCYC 1 cut(s) 386
BbsI GAAGAC 1 cut(s) 452
Bbv12I GWGCWC 1 cut(s) 857
BbvCI CCTCAGC 2 cut(s) 641, 805
BbvI GCAGC 7 cut(s) 77, 164, 409, 708, 826, 899, 949
BccI CCATC 6 cut(s) 103, 350, 451, 541, 580, 731
BciT130I CCWGG 3 cut(s) 189, 678, 781
BcoDI GTCTC 1 cut(s) 408
BcuI ACTAGT 1 cut(s) 989
BfaI CTAG 4 cut(s) 705, 818, 893, 990
BglII AGATCT 1 cut(s) 158
BisI GCNGC 7 cut(s) 66, 178, 423, 697, 815, 888, 938
BlsI GCNGC 7 cut(s) 67, 179, 424, 698, 816, 889, 939
Bme1390I CCNGG 3 cut(s) 189, 678, 781
BmgBI CACGTC 1 cut(s) 378
BmiI GGNNCC 1 cut(s) 802
BmrFI CCNGG 3 cut(s) 189, 678, 781
BmsI GCATC 7 cut(s) 182, 193, 246, 279, 343, 651, 924
BpiI GAAGAC 1 cut(s) 452
Bpu10I CCTNAGC 2 cut(s) 641, 805
Bpu14I TTCGAA 1 cut(s) 689
BpuEI CTTGAG 3 cut(s) 45, 860, 901
BsaBI GATNNNNATC 1 cut(s) 433
BsaJI CCNNGG 4 cut(s) 144, 187, 677, 780
BsaWI WCCGGW 3 cut(s) 406, 580, 846
Bsc4I CCNNNNNNNGG 4 cut(s) 380, 786, 831, 877
Bse118I RCCGGY 2 cut(s) 418, 846
Bse1I ACTGG 1 cut(s) 976
Bse8I GATNNNNATC 1 cut(s) 433
BseAI TCCGGA 1 cut(s) 406
BseBI CCWGG 3 cut(s) 189, 678, 781
BseDI CCNNGG 4 cut(s) 144, 187, 677, 780
BseGI GGATG 5 cut(s) 113, 197, 270, 628, 742
BseJI GATNNNNATC 1 cut(s) 433
BseLI CCNNNNNNNGG 4 cut(s) 380, 786, 831, 877
BseMII CTCAG 3 cut(s) 132, 632, 819
BseNI ACTGG 1 cut(s) 976
BseRI GAGGAG 1 cut(s) 378
BseXI GCAGC 7 cut(s) 77, 164, 409, 708, 826, 899, 949
BsgI GTGCAG 1 cut(s) 833
Bsh1236I CGCG 1 cut(s) 171
BshFI GGCC 2 cut(s) 233, 310
BshNI GGYRCC 1 cut(s) 800
BshTI ACCGGT 1 cut(s) 846
BsiHKAI GWGCWC 1 cut(s) 857
BsiSI CCGG 5 cut(s) 196, 407, 419, 581, 847
BslFI GGGAC 1 cut(s) 731
BslI CCNNNNNNNGG 4 cut(s) 380, 786, 831, 877
BsmAI GTCTC 1 cut(s) 408
BsmFI GGGAC 1 cut(s) 731
BsmI GAATGC 1 cut(s) 10
BsnI GGCC 2 cut(s) 233, 310
Bsp119I TTCGAA 1 cut(s) 689
Bsp1286I GDGCHC 2 cut(s) 386, 857
Bsp13I TCCGGA 1 cut(s) 406
Bsp143I GATC 4 cut(s) 158, 253, 820, 912
Bsp19I CCATGG 1 cut(s) 144
Bsp68I TCGCGA 1 cut(s) 171
BspACI CCGC 5 cut(s) 78, 141, 284, 534, 787
BspANI GGCC 2 cut(s) 233, 310
BspCNI CTCAG 3 cut(s) 131, 633, 818
BspEI TCCGGA 1 cut(s) 406
BspFNI CGCG 1 cut(s) 171
BspLI GGNNCC 1 cut(s) 802
BspPI GGATC 1 cut(s) 815
BspT104I TTCGAA 1 cut(s) 689
BspT107I GGYRCC 1 cut(s) 800
BsrBI CCGCTC 1 cut(s) 286
BsrFI RCCGGY 2 cut(s) 418, 846
BsrI ACTGG 1 cut(s) 976
BssAI RCCGGY 2 cut(s) 418, 846
BssECI CCNNGG 4 cut(s) 144, 187, 677, 780
BssMI GATC 4 cut(s) 158, 253, 820, 912
BssT1I CCWWGG 1 cut(s) 144
Bst2UI CCWGG 3 cut(s) 189, 678, 781
BstAPI GCANNNNNTGC 1 cut(s) 861
BstBI TTCGAA 1 cut(s) 689
BstC8I GCNNGC 3 cut(s) 235, 284, 638
BstDEI CTNAG 5 cut(s) 118, 312, 450, 641, 805
BstDSI CCRYGG 1 cut(s) 144
BstF5I GGATG 5 cut(s) 113, 197, 270, 628, 742
BstFNI CGCG 1 cut(s) 171
BstKTI GATC 4 cut(s) 161, 256, 823, 915
BstMAI GTCTC 1 cut(s) 408
BstMBI GATC 4 cut(s) 158, 253, 820, 912
BstMWI GCNNNNNNNGC 6 cut(s) 65, 177, 225, 234, 861, 893
BstNI CCWGG 3 cut(s) 189, 678, 781
BstSCI CCNGG 3 cut(s) 187, 676, 779
BstUI CGCG 1 cut(s) 171
BstV1I GCAGC 7 cut(s) 77, 164, 409, 708, 826, 899, 949
BstV2I GAAGAC 1 cut(s) 452
BstX2I RGATCY 2 cut(s) 158, 820
BstXI CCANNNNNNTGG 1 cut(s) 145
BstYI RGATCY 2 cut(s) 158, 820
BsuRI GGCC 2 cut(s) 233, 310
BtgI CCRYGG 1 cut(s) 144
BtgZI GCGATG 1 cut(s) 542
BtrI CACGTC 1 cut(s) 378
BtsCI GGATG 5 cut(s) 113, 197, 270, 628, 742
BtsIMutI CAGTG 2 cut(s) 126, 734
BtuMI TCGCGA 1 cut(s) 171
Cac8I GCNNGC 3 cut(s) 235, 284, 638
Cfr10I RCCGGY 2 cut(s) 418, 846
Csp6I GTAC 2 cut(s) 844, 979
CspAI ACCGGT 1 cut(s) 846
CviAII CATG 5 cut(s) 19, 70, 145, 259, 831
CviQI GTAC 2 cut(s) 844, 979
DdeI CTNAG 5 cut(s) 118, 312, 450, 641, 805
DpnI GATC 4 cut(s) 160, 255, 822, 914
DpnII GATC 4 cut(s) 158, 253, 820, 912
EaeI YGGCCR 1 cut(s) 231
EciI GGCGGA 1 cut(s) 67
Eco130I CCWWGG 1 cut(s) 144
Eco147I AGGCCT 1 cut(s) 310
Eco24I GRGCYC 1 cut(s) 386
EcoRI GAATTC 1 cut(s) 921
EcoRII CCWGG 3 cut(s) 187, 676, 779
EcoT14I CCWWGG 1 cut(s) 144
EcoT38I GRGCYC 1 cut(s) 386
ErhI CCWWGG 1 cut(s) 144
FaeI CATG 5 cut(s) 22, 73, 148, 262, 834
FaqI GGGAC 1 cut(s) 731
FatI CATG 5 cut(s) 18, 69, 144, 258, 830
FauI CCCGC 2 cut(s) 291, 527
Fnu4HI GCNGC 7 cut(s) 66, 178, 423, 697, 815, 888, 938
FokI GGATG 5 cut(s) 100, 204, 257, 635, 749
FriOI GRGCYC 1 cut(s) 386
Fsp4HI GCNGC 7 cut(s) 66, 178, 423, 697, 815, 888, 938
FspBI CTAG 4 cut(s) 705, 818, 893, 990
GluI GCNGC 7 cut(s) 66, 178, 423, 697, 815, 888, 938
HaeIII GGCC 2 cut(s) 233, 310
HapII CCGG 5 cut(s) 196, 407, 419, 581, 847
Hin1II CATG 5 cut(s) 22, 73, 148, 262, 834
HinfI GANTC 3 cut(s) 394, 760, 835
HpaII CCGG 5 cut(s) 196, 407, 419, 581, 847
HphI GGTGA 3 cut(s) 280, 570, 601
Hpy166II GTNNAC 2 cut(s) 24, 369
Hpy188I TCNGA 4 cut(s) 163, 393, 736, 765
Hpy188III TCNNGA 6 cut(s) 170, 251, 274, 407, 839, 918
Hpy8I GTNNAC 2 cut(s) 24, 369
Hpy99I CGWCG 3 cut(s) 94, 155, 382
HpyCH4IV ACGT 1 cut(s) 377
HpyCH4V TGCA 9 cut(s) 213, 425, 560, 652, 664, 696, 814, 937, 995
HpyF10VI GCNNNNNNNGC 6 cut(s) 65, 177, 225, 234, 861, 893
HpyF3I CTNAG 5 cut(s) 118, 312, 450, 641, 805
HpySE526I ACGT 1 cut(s) 377
Hsp92II CATG 5 cut(s) 22, 73, 148, 262, 834
Kpn2I TCCGGA 1 cut(s) 406
Kzo9I GATC 4 cut(s) 158, 253, 820, 912
LmnI GCTCC 2 cut(s) 409, 852
Lsp1109I GCAGC 7 cut(s) 77, 164, 409, 708, 826, 899, 949
LweI GCATC 7 cut(s) 182, 193, 246, 279, 343, 651, 924
MaeI CTAG 4 cut(s) 705, 818, 893, 990
MaeII ACGT 1 cut(s) 377
MaeIII GTNAC 1 cut(s) 576
MalI GATC 4 cut(s) 160, 255, 822, 914
MbiI CCGCTC 1 cut(s) 286
MboI GATC 4 cut(s) 158, 253, 820, 912
MboII GAAGA 6 cut(s) 294, 451, 454, 457, 466, 916
MflI RGATCY 2 cut(s) 158, 820
MhlI GDGCHC 2 cut(s) 386, 857
MlsI TGGCCA 1 cut(s) 233
MluCI AATT 6 cut(s) 293, 570, 691, 921, 944, 997
MluNI TGGCCA 1 cut(s) 233
MmeI TCCRAC 1 cut(s) 714
MnlI CCTC 7 cut(s) 47, 92, 127, 399, 636, 675, 814
Mox20I TGGCCA 1 cut(s) 233
MroI TCCGGA 1 cut(s) 406
MscI TGGCCA 1 cut(s) 233
MseI TTAA 3 cut(s) 414, 509, 723
MslI CAYNNNNRTG 1 cut(s) 143
Msp20I TGGCCA 1 cut(s) 233
MspA1I CMGCKG 2 cut(s) 177, 809
MspI CCGG 5 cut(s) 196, 407, 419, 581, 847
MspR9I CCNGG 3 cut(s) 189, 678, 781
Mva1269I GAATGC 1 cut(s) 10
MvaI CCWGG 3 cut(s) 189, 678, 781
MvnI CGCG 1 cut(s) 171
MwoI GCNNNNNNNGC 6 cut(s) 65, 177, 225, 234, 861, 893
NcoI CCATGG 1 cut(s) 144
NdeII GATC 4 cut(s) 158, 253, 820, 912
NlaIII CATG 5 cut(s) 22, 73, 148, 262, 834
NlaIV GGNNCC 1 cut(s) 802
NmuCI GTSAC 1 cut(s) 576
NruI TCGCGA 1 cut(s) 171
NspV TTCGAA 1 cut(s) 689
PceI AGGCCT 1 cut(s) 310
PctI GAATGC 1 cut(s) 10
PfeI GAWTC 3 cut(s) 394, 760, 835
PflFI GACNNNGTC 1 cut(s) 19
PflMI CCANNNNNTGG 2 cut(s) 831, 877
PinAI ACCGGT 1 cut(s) 846
PkrI GCNGC 7 cut(s) 67, 179, 424, 698, 816, 889, 939
PshBI ATTAAT 1 cut(s) 723
PsiI TTATAA 1 cut(s) 543
Psp6I CCWGG 3 cut(s) 187, 676, 779
PspGI CCWGG 3 cut(s) 187, 676, 779
PspN4I GGNNCC 1 cut(s) 802
PsuI RGATCY 2 cut(s) 158, 820
PsyI GACNNNGTC 1 cut(s) 19
PvuII CAGCTG 2 cut(s) 177, 809
RruI TCGCGA 1 cut(s) 171
RsaI GTAC 2 cut(s) 845, 980
RsaNI GTAC 2 cut(s) 844, 979
RseI CAYNNNNRTG 1 cut(s) 143
SaqAI TTAA 3 cut(s) 414, 509, 723
SatI GCNGC 7 cut(s) 66, 178, 423, 697, 815, 888, 938
Sau3AI GATC 4 cut(s) 158, 253, 820, 912
ScrFI CCNGG 3 cut(s) 189, 678, 781
SduI GDGCHC 2 cut(s) 386, 857
SfaNI GCATC 7 cut(s) 182, 193, 246, 279, 343, 651, 924
SfuI TTCGAA 1 cut(s) 689
SmiMI CAYNNNNRTG 1 cut(s) 143
SmlI CTYRAG 3 cut(s) 60, 839, 916
SmoI CTYRAG 3 cut(s) 60, 839, 916
SpeI ACTAGT 1 cut(s) 989
Sse9I AATT 6 cut(s) 293, 570, 691, 921, 944, 997
SseBI AGGCCT 1 cut(s) 310
SsiI CCGC 5 cut(s) 78, 141, 284, 534, 787
SspMI CTAG 4 cut(s) 705, 818, 893, 990
StuI AGGCCT 1 cut(s) 310
StyD4I CCNGG 3 cut(s) 187, 676, 779
StyI CCWWGG 1 cut(s) 144
TaiI ACGT 1 cut(s) 380
TaqI TCGA 6 cut(s) 252, 351, 359, 437, 689, 1008
TasI AATT 6 cut(s) 293, 570, 691, 921, 944, 997
TfiI GAWTC 3 cut(s) 394, 760, 835
Tru1I TTAA 3 cut(s) 414, 509, 723
Tru9I TTAA 3 cut(s) 414, 509, 723
TscAI CASTG 2 cut(s) 126, 734
TseFI GTSAC 1 cut(s) 576
TseI GCWGC 7 cut(s) 65, 177, 422, 696, 814, 887, 937
Tsp45I GTSAC 1 cut(s) 576
TspDTI ATGAA 3 cut(s) 17, 86, 644
TspRI CASTG 2 cut(s) 126, 734
Tth111I GACNNNGTC 1 cut(s) 19
Van91I CCANNNNNTGG 2 cut(s) 831, 877
VspI ATTAAT 1 cut(s) 723
XapI RAATTY 3 cut(s) 293, 921, 944
XcmI CCANNNNNNNNNTGG 2 cut(s) 142, 777
XspI CTAG 4 cut(s) 705, 818, 893, 990
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.