Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010784

Physical Location & Seq

Genomic Coordinates Forward (+)

1678881 .. 1681710

Gene Structure 2830 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G05620.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 969 bp

ATGGCGATAGGAGACCGCAAGAAGATTATCATCGATACTGATCCTGGAATCGATGATGCAATGGCGATATTCGTAGCTTTAAATTCACCTGAAGTTGATGTCATTGGCCTCACTACTATCTTTGGAAACGTGTATACCACTCTCGCCACTCGAAACGCCTTGCATTTGTTGGAGGTTGCGGGTAGGACCGATATTCCGGTGGCTGAAGGAACACATAAAACCTTCTTGAACGATACGAAGCTTCGAATAGCTGACTTTGTTCATGGAAAAGATGGGCTTGGCAACCAAAACTTCCCTCCACCTAAAGGAAAACCAATTGAAAAGTCTGGACCTGAGTTTTTAGTTGAACAAGCAAAGCTTTGCCCTGGTGAAATCACGGTTGTTGCTTTGGGACCACTAACAAATCTCGCGTTGGCTGTTCAGCTTGATCCAGAGTTTTCGAAAAATGTCGGACAAATTGTTCTTCTTGGTGGAGCATTTGCAGTAAACGGAAATGTAAATCCAGCTTCGGAAGCTAATATTTTTGGCGATCCCGAAGCTGCAGATATTGTGTTCACATGTGGGGCCGATATAATTGCTGTGGGAATCAATGTGACCCATCAAGTTATTATGACAGCTGATGACAAGGACAAACTAGCATCATCGAAGGGGAAATTAGCTCAATATCTCTGTAAAATCCTTGATGTGTACTATGATTATCATCTCACGGCTTACGAAATCAAAGGTGTGTACCTTCATGATCCTGCGACGATCCTTGCGGCTTTCCTTCCTTCTCTATTCACTTATACAGAAGGAGTTGCTAGAGTGCAGACAAGTGGTATCACTAGGGGACTCACTTTACTGTACAACAATCTTAAGAGGTTTGAGGAAGCGAACGAGTGGTCAGACAAACCAACGGTAAAAGTGGCAGTGACGGTTGATGCTCCTGCAGTCGTGAAGCTCATAATGGATAGGCTTATGGAGTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006148 GO:0006152 GO:0006725 GO:0006807 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0008194 GO:0008477 GO:0009056 GO:0009116 GO:0009119 GO:0009164 GO:0009987 GO:0010150 GO:0016740 GO:0016757 GO:0016758 GO:0016787 GO:0016798 GO:0016799 GO:0019439 GO:0032501 GO:0032502 GO:0034641 GO:0034655 GO:0034656 GO:0035251 GO:0042278 GO:0042454 GO:0044237 GO:0044238 GO:0044248 GO:0044270 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046102 GO:0046128 GO:0046130 GO:0046483 GO:0046527 GO:0046700 GO:0047724 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0055086 GO:0071704 GO:0072521 GO:0072523 GO:0090693 GO:0099402 GO:1901135 GO:1901136 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575 GO:1901657 GO:1901658

KEGG Pathways

Metabolic & Signaling

ko00240 ko00760 map00240 map00760

Pfam Domains

Protein Families

IU_nuc_hydro

Protein Analysis

322

Amino Acids

34.67

Weight (kDa)

5.02

Isoelectric Point (pI)

16.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IU_nuc_hydro	PF01156	1 - 292	3.3e-79	Inosine-uridine preferring nucleoside hydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010784)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05620 AT1G05620
fragaria_vesca	FvH4_1g00210
malus_domestica	MD00G1087000.v1.1 MD15G1142900.v1.1
prunus_persica	Prupe.7G270100_v2.0.a1 Prupe.7G270100_v2.0.a1
pyrus_communis	pycom15g12900 pycom290g00180
rosa_chinensis	RchiOBHm_Chr2g0084501
rosa_multiflora	Rmu_co8418457.1_g000001 Rmu_sc0009647.1_g000005
rosa_roxburghii	Rroxscaffold_2G00156010
rosa_rugosa	Rorug01G0454600 Rorug01G0454600
rosa_samantha	Rh2AG002600 Rh2BG002200 Rh2CG002700 Rh2DG002700
rosa_wichuraiana	Rw2G000230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	134
AccII	CGCG	1 cut(s)	410
AciI	CCGC	3 cut(s)	16, 179, 758
AclWI	GGATC	5 cut(s)	35, 422, 524, 734, 745
AcsI	RAATTY	1 cut(s)	82
AcuI	CTGAAG	2 cut(s)	111, 225
AfaI	GTAC	3 cut(s)	689, 731, 845
AfiI	CCNNNNNNNGG	1 cut(s)	305
AflII	CTTAAG	1 cut(s)	854
AflIII	ACRYGT	2 cut(s)	129, 557
AgsI	TTSAA	3 cut(s)	229, 320, 347
AjnI	CCWGG	2 cut(s)	43, 364
AloI	GAACNNNNNNTCC	2 cut(s)	444, 476
Alw26I	GTCTC	1 cut(s)	6
AlwI	GGATC	5 cut(s)	35, 422, 524, 734, 745
AoxI	GGCC	2 cut(s)	106, 564
ApeKI	GCWGC	1 cut(s)	539
ApoI	RAATTY	1 cut(s)	82
ArsI	GACNNNNNNTTYG	2 cut(s)	866, 898
AspS9I	GGNCC	4 cut(s)	186, 329, 392, 564
AsuHPI	GGTGA	2 cut(s)	78, 380
AsuII	TTCGAA	2 cut(s)	244, 440
AvaII	GGWCC	3 cut(s)	186, 329, 392
BbvI	GCAGC	1 cut(s)	526
BccI	CCATC	2 cut(s)	266, 606
BceAI	ACGGC	1 cut(s)	723
BcgI	CGANNNNNNTGC	2 cut(s)	557, 591
BciT130I	CCWGG	2 cut(s)	45, 366
BcoDI	GTCTC	1 cut(s)	6
BfaI	CTAG	3 cut(s)	635, 801, 825
BfmI	CTRYAG	2 cut(s)	540, 927
BfrI	CTTAAG	1 cut(s)	854
BisI	GCNGC	2 cut(s)	540, 759
BlsI	GCNGC	2 cut(s)	541, 760
Bme1390I	CCNGG	2 cut(s)	45, 366
Bme18I	GGWCC	3 cut(s)	186, 329, 392
BmgT120I	GGNCC	4 cut(s)	186, 329, 392, 564
BmiI	GGNNCC	2 cut(s)	393, 565
BmrFI	CCNGG	2 cut(s)	45, 366
BmsI	GCATC	3 cut(s)	46, 647, 910
Bpu14I	TTCGAA	2 cut(s)	244, 440
Bsa29I	ATCGAT	2 cut(s)	33, 51
BsaBI	GATNNNNATC	3 cut(s)	29, 39, 699
BsaI	GGTCTC	1 cut(s)	6
BsaJI	CCNNGG	1 cut(s)	364
BsaWI	WCCGGW	1 cut(s)	196
Bsc4I	CCNNNNNNNGG	1 cut(s)	305
Bse3DI	GCAATG	1 cut(s)	66
Bse8I	GATNNNNATC	3 cut(s)	29, 39, 699
BseBI	CCWGG	2 cut(s)	45, 366
BseCI	ATCGAT	2 cut(s)	33, 51
BseDI	CCNNGG	1 cut(s)	364
BseJI	GATNNNNATC	3 cut(s)	29, 39, 699
BseLI	CCNNNNNNNGG	1 cut(s)	305
BseMI	GCAATG	1 cut(s)	66
BseMII	CTCAG	1 cut(s)	324
BseXI	GCAGC	1 cut(s)	526
BsgI	GTGCAG	1 cut(s)	827
Bsh1236I	CGCG	1 cut(s)	410
BshFI	GGCC	2 cut(s)	108, 566
BshVI	ATCGAT	2 cut(s)	33, 51
BsiSI	CCGG	1 cut(s)	197
BslFI	GGGAC	2 cut(s)	405, 843
BslI	CCNNNNNNNGG	1 cut(s)	305
BsmAI	GTCTC	1 cut(s)	6
BsmFI	GGGAC	2 cut(s)	405, 843
BsnI	GGCC	2 cut(s)	108, 566
Bso31I	GGTCTC	1 cut(s)	6
Bsp119I	TTCGAA	2 cut(s)	244, 440
Bsp1407I	TGTACA	1 cut(s)	843
Bsp143I	GATC	5 cut(s)	40, 427, 529, 739, 750
BspACI	CCGC	3 cut(s)	16, 179, 758
BspANI	GGCC	2 cut(s)	108, 566
BspCNI	CTCAG	1 cut(s)	325
BspDI	ATCGAT	2 cut(s)	33, 51
BspFNI	CGCG	1 cut(s)	410
BspHI	TCATGA	1 cut(s)	736
BspLI	GGNNCC	2 cut(s)	393, 565
BspMAI	CTGCAG	2 cut(s)	544, 931
BspPI	GGATC	5 cut(s)	35, 422, 524, 734, 745
BspT104I	TTCGAA	2 cut(s)	244, 440
BspTI	CTTAAG	1 cut(s)	854
BspTNI	GGTCTC	1 cut(s)	6
BsrDI	GCAATG	1 cut(s)	66
BsrGI	TGTACA	1 cut(s)	843
BssECI	CCNNGG	1 cut(s)	364
BssMI	GATC	5 cut(s)	40, 427, 529, 739, 750
BssNAI	GTATAC	1 cut(s)	135
Bst1107I	GTATAC	1 cut(s)	135
Bst2UI	CCWGG	2 cut(s)	45, 366
Bst4CI	ACNGT	4 cut(s)	379, 843, 898, 916
BstAFI	CTTAAG	1 cut(s)	854
BstAUI	TGTACA	1 cut(s)	843
BstBI	TTCGAA	2 cut(s)	244, 440
BstDEI	CTNAG	1 cut(s)	333
BstFNI	CGCG	1 cut(s)	410
BstKTI	GATC	5 cut(s)	43, 430, 532, 742, 753
BstMAI	GTCTC	1 cut(s)	6
BstMBI	GATC	5 cut(s)	40, 427, 529, 739, 750
BstMWI	GCNNNNNNNGC	1 cut(s)	512
BstNI	CCWGG	2 cut(s)	45, 366
BstNSI	RCATGY	1 cut(s)	561
BstSCI	CCNGG	2 cut(s)	43, 364
BstSFI	CTRYAG	2 cut(s)	540, 927
BstUI	CGCG	1 cut(s)	410
BstV1I	GCAGC	1 cut(s)	526
BstZ17I	GTATAC	1 cut(s)	135
Bsu15I	ATCGAT	2 cut(s)	33, 51
BsuRI	GGCC	2 cut(s)	108, 566
BsuTUI	ATCGAT	2 cut(s)	33, 51
BtsI	GCAGTG	1 cut(s)	915
BtsIMutI	CAGTG	1 cut(s)	915
CciI	TCATGA	1 cut(s)	736
Cfr13I	GGNCC	4 cut(s)	186, 329, 392, 564
ClaI	ATCGAT	2 cut(s)	33, 51
Csp6I	GTAC	3 cut(s)	688, 730, 844
CviAII	CATG	3 cut(s)	263, 558, 737
CviQI	GTAC	3 cut(s)	688, 730, 844
DdeI	CTNAG	1 cut(s)	333
DpnI	GATC	5 cut(s)	42, 429, 531, 741, 752
DpnII	GATC	5 cut(s)	40, 427, 529, 739, 750
DraI	TTTAAA	1 cut(s)	81
Eco31I	GGTCTC	1 cut(s)	6
Eco47I	GGWCC	3 cut(s)	186, 329, 392
Eco57I	CTGAAG	2 cut(s)	111, 225
EcoRII	CCWGG	2 cut(s)	43, 364
FaeI	CATG	3 cut(s)	266, 561, 740
FalI	AAGNNNNNCTT	4 cut(s)	261, 293, 342, 374
FaqI	GGGAC	2 cut(s)	405, 843
FatI	CATG	3 cut(s)	262, 557, 736
FauI	CCCGC	1 cut(s)	172
FblI	GTMKAC	1 cut(s)	134
Fnu4HI	GCNGC	2 cut(s)	540, 759
Fsp4HI	GCNGC	2 cut(s)	540, 759
FspBI	CTAG	3 cut(s)	635, 801, 825
GluI	GCNGC	2 cut(s)	540, 759
HaeIII	GGCC	2 cut(s)	108, 566
HapII	CCGG	1 cut(s)	197
Hin1II	CATG	3 cut(s)	266, 561, 740
HindIII	AAGCTT	2 cut(s)	239, 356
HinfI	GANTC	4 cut(s)	48, 585, 831, 962
HpaII	CCGG	1 cut(s)	197
HphI	GGTGA	2 cut(s)	78, 380
Hpy166II	GTNNAC	5 cut(s)	135, 487, 555, 688, 730
Hpy188I	TCNGA	3 cut(s)	452, 511, 886
Hpy188III	TCNNGA	6 cut(s)	226, 327, 431, 533, 737, 934
Hpy8I	GTNNAC	5 cut(s)	135, 487, 555, 688, 730
Hpy99I	CGWCG	1 cut(s)	751
HpyAV	CCTTC	7 cut(s)	200, 232, 640, 743, 776, 780, 785
HpyCH4III	ACNGT	4 cut(s)	379, 843, 898, 916
HpyCH4IV	ACGT	1 cut(s)	129
HpyCH4V	TGCA	6 cut(s)	59, 163, 482, 542, 808, 929
HpyF10VI	GCNNNNNNNGC	1 cut(s)	512
HpyF3I	CTNAG	1 cut(s)	333
HpySE526I	ACGT	1 cut(s)	129
Hsp92II	CATG	3 cut(s)	266, 561, 740
Kzo9I	GATC	5 cut(s)	40, 427, 529, 739, 750
LmnI	GCTCC	2 cut(s)	473, 928
Lsp1109I	GCAGC	1 cut(s)	526
LweI	GCATC	3 cut(s)	46, 647, 910
MaeI	CTAG	3 cut(s)	635, 801, 825
MaeII	ACGT	1 cut(s)	129
MaeIII	GTNAC	2 cut(s)	592, 910
MalI	GATC	5 cut(s)	42, 429, 531, 741, 752
MboI	GATC	5 cut(s)	40, 427, 529, 739, 750
MboII	GAAGA	2 cut(s)	34, 455
MfeI	CAATTG	1 cut(s)	315
MluCI	AATT	5 cut(s)	82, 315, 456, 573, 653
MlyI	GAGTC	1 cut(s)	825
MmeI	TCCRAC	2 cut(s)	150, 430
MnlI	CCTC	5 cut(s)	119, 166, 306, 852, 859
MseI	TTAA	3 cut(s)	80, 855, 967
MspA1I	CMGCKG	1 cut(s)	617
MspCI	CTTAAG	1 cut(s)	854
MspI	CCGG	1 cut(s)	197
MspR9I	CCNGG	2 cut(s)	45, 366
MunI	CAATTG	1 cut(s)	315
MvaI	CCWGG	2 cut(s)	45, 366
MvnI	CGCG	1 cut(s)	410
MwoI	GCNNNNNNNGC	1 cut(s)	512
NdeII	GATC	5 cut(s)	40, 427, 529, 739, 750
NlaIII	CATG	3 cut(s)	266, 561, 740
NlaIV	GGNNCC	2 cut(s)	393, 565
NmuCI	GTSAC	2 cut(s)	592, 910
NspI	RCATGY	1 cut(s)	561
NspV	TTCGAA	2 cut(s)	244, 440
PagI	TCATGA	1 cut(s)	736
PciI	ACATGT	1 cut(s)	557
PfeI	GAWTC	2 cut(s)	48, 585
PfoI	TCCNGGA	1 cut(s)	43
PkrI	GCNGC	2 cut(s)	541, 760
PleI	GAGTC	1 cut(s)	825
PpsI	GAGTC	1 cut(s)	825
PscI	ACATGT	1 cut(s)	557
Psp6I	CCWGG	2 cut(s)	43, 364
PspGI	CCWGG	2 cut(s)	43, 364
PspN4I	GGNNCC	2 cut(s)	393, 565
PspPI	GGNCC	4 cut(s)	186, 329, 392, 564
PstI	CTGCAG	2 cut(s)	544, 931
PvuII	CAGCTG	1 cut(s)	617
RsaI	GTAC	3 cut(s)	689, 731, 845
RsaNI	GTAC	3 cut(s)	688, 730, 844
SaqAI	TTAA	3 cut(s)	80, 855, 967
SatI	GCNGC	2 cut(s)	540, 759
Sau3AI	GATC	5 cut(s)	40, 427, 529, 739, 750
Sau96I	GGNCC	4 cut(s)	186, 329, 392, 564
SchI	GAGTC	1 cut(s)	825
ScrFI	CCNGG	2 cut(s)	45, 366
SfaNI	GCATC	3 cut(s)	46, 647, 910
SfcI	CTRYAG	2 cut(s)	540, 927
SfuI	TTCGAA	2 cut(s)	244, 440
SinI	GGWCC	3 cut(s)	186, 329, 392
SmlI	CTYRAG	1 cut(s)	854
SmoI	CTYRAG	1 cut(s)	854
Sse9I	AATT	5 cut(s)	82, 315, 456, 573, 653
SsiI	CCGC	3 cut(s)	16, 179, 758
SspI	AATATT	1 cut(s)	520
SspMI	CTAG	3 cut(s)	635, 801, 825
StyD4I	CCNGG	2 cut(s)	43, 364
TaaI	ACNGT	4 cut(s)	379, 843, 898, 916
TaiI	ACGT	1 cut(s)	132
TaqI	TCGA	6 cut(s)	33, 51, 151, 244, 440, 644
TaqII	GACCGA	1 cut(s)	203
TasI	AATT	5 cut(s)	82, 315, 456, 573, 653
TatI	WGTACW	2 cut(s)	687, 843
TauI	GCSGC	1 cut(s)	761
TfiI	GAWTC	2 cut(s)	48, 585
Tru1I	TTAA	3 cut(s)	80, 855, 967
Tru9I	TTAA	3 cut(s)	80, 855, 967
TscAI	CASTG	1 cut(s)	915
TseFI	GTSAC	2 cut(s)	592, 910
TseI	GCWGC	1 cut(s)	539
Tsp45I	GTSAC	2 cut(s)	592, 910
TspDTI	ATGAA	2 cut(s)	251, 725
TspGWI	ACGGA	1 cut(s)	504
TspRI	CASTG	1 cut(s)	915
Vha464I	CTTAAG	1 cut(s)	854
VpaK11BI	GGWCC	3 cut(s)	186, 329, 392
XapI	RAATTY	1 cut(s)	82
XceI	RCATGY	1 cut(s)	561
XmiI	GTMKAC	1 cut(s)	134
XspI	CTAG	3 cut(s)	635, 801, 825

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.