Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0010784

Physical Location & Seq

Genomic Coordinates Forward (+)

8824261 .. 8826644

Gene Structure 2384 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g12900.9

Sequence Viewer

CDS Protein Promoter (2k)

Length: 981 bp

ATGGCAGAGGGGGCAGAGAGGGAAGCCAAGAAGATCATCATTGACACCGACCCTGGTATCGATGATGCCATGGCCATATTTGTGGCGTTACAGTCCCCGGAAGTGCAAGTGATTGGAATTACTACTATTTATGGAAATGTTTATACCACTCTCGCCACGAGAAATGCCTTGCATTTGTTGGAGGTTGCAGGGAGAACCGATATTCCGGTGGCTGAAGGATCTCACGTCACAATAACTAAAGGTACAAAACTTCGTATTGCTGATTTTGTTCATGGTGTGGATGGACTTGGCAACCAAAATTTTCCCCCACCAAAAGGAAAGCCAATTGAACAGTCGGCAGCAGCTTTTCTGGTTGAACAAGCAAGCCTTTACCCTGGAAAGGTCACTGTGGTAGCATTGGGCCCTCTTACAAATATTGCTCTGGCTACTCAACTAGACCCTGCATTTGCAAAGAACATTGGCCAGATTATTCTTCTTGGTGGTGCTTTTGCAGTCAATGGGAATGTAAATCCAGCAGCAGAGGCCAATATATTTGGGGATCGATCAGATGCTGCAGATATGGTATTTACATGTGGAGCAGATATTTTGGCTATGGGGATTAATGTGACCCATCAAGTTGTCTTGACAGACGCTGACAGAGAAACGCTGGCAATGTCAAATGGAAAGTTTGCTCAATACTTGTGCAAAATTTTAGATGTGTACTTCTCCTACCATCATGATGCGTATAGCACAAAAGGAGTTTATCTTCATGATCCTGCAGTACTTGTTGCAGCCGTTAATCCTTCACTTTTCACCTACATGGAGGGTGTTGTTCGAGTCCAGACAGATGGCATCACAAGAGGACTCACAATTTTGTACAACAAACAGAAAAGGTTTGGTGAGGTGACGGAGTGGTGTGATAAACCCACAGTGAAGGTAGCGGTGACGGTTGATGCCCCCACAGTTGTGAAATTGGTTATGGAACGGCTCATTGAGTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006148 GO:0006152 GO:0006725 GO:0006807 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0008194 GO:0008477 GO:0009056 GO:0009116 GO:0009119 GO:0009164 GO:0009987 GO:0010150 GO:0016740 GO:0016757 GO:0016758 GO:0016787 GO:0016798 GO:0016799 GO:0019439 GO:0032501 GO:0032502 GO:0034641 GO:0034655 GO:0034656 GO:0035251 GO:0042278 GO:0042454 GO:0044237 GO:0044238 GO:0044248 GO:0044270 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046102 GO:0046128 GO:0046130 GO:0046483 GO:0046527 GO:0046700 GO:0047724 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0055086 GO:0071704 GO:0072521 GO:0072523 GO:0090693 GO:0099402 GO:1901135 GO:1901136 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575 GO:1901657 GO:1901658

KEGG Pathways

Metabolic & Signaling

ko00240 ko00760 map00240 map00760

Pfam Domains

Protein Families

IU_nuc_hydro

Protein Analysis

327

Amino Acids

34.92

Weight (kDa)

5.27

Isoelectric Point (pI)

25.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010784)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05620 AT1G05620
fragaria_vesca	FvH4_1g00210
malus_domestica	MD00G1087000.v1.1 MD15G1142900.v1.1
prunus_persica	Prupe.7G270100_v2.0.a1 Prupe.7G270100_v2.0.a1
pyrus_communis	pycom15g12900 pycom290g00180
rosa_chinensis	RchiOBHm_Chr2g0084501
rosa_multiflora	Rmu_co8418457.1_g000001 Rmu_sc0009647.1_g000005
rosa_roxburghii	Rroxscaffold_2G00156010
rosa_rugosa	Rorug01G0454600 Rorug01G0454600
rosa_samantha	Rh2AG002600 Rh2BG002200 Rh2CG002700 Rh2DG002700
rosa_wichuraiana	Rw2G000230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	920
AclWI	GGATC	3 cut(s)	226, 546, 746
AcoI	YGGCCR	2 cut(s)	72, 460
AcsI	RAATTY	2 cut(s)	298, 687
AcuI	CTGAAG	1 cut(s)	234
AfaI	GTAC	4 cut(s)	244, 701, 762, 857
AfiI	CCNNNNNNNGG	2 cut(s)	314, 379
AflIII	ACRYGT	1 cut(s)	569
AgsI	TTSAA	2 cut(s)	329, 356
AjiI	CACGTC	1 cut(s)	226
AjnI	CCWGG	2 cut(s)	52, 373
AleI	CACNNNNGTG	1 cut(s)	944
AloI	GAACNNNNNNTCC	2 cut(s)	187, 219
AluBI	AGCT	1 cut(s)	344
AluI	AGCT	1 cut(s)	344
AlwI	GGATC	3 cut(s)	226, 546, 746
AlwNI	CAGNNNCTG	2 cut(s)	551, 632
AoxI	GGCC	4 cut(s)	72, 400, 460, 522
ApaI	GGGCCC	1 cut(s)	404
ApeKI	GCWGC	5 cut(s)	338, 341, 515, 551, 770
ApoI	RAATTY	2 cut(s)	298, 687
ArsI	GACNNNNNNTTYG	2 cut(s)	428, 460
AseI	ATTAAT	1 cut(s)	600
AspS9I	GGNCC	2 cut(s)	400, 401
AsuC2I	CCSGG	1 cut(s)	98
AsuHPI	GGTGA	4 cut(s)	784, 890, 895, 934
BaeGI	GKGCMC	1 cut(s)	404
BaeI	ACNNNNGTAYC	2 cut(s)	40, 73
BalI	TGGCCA	2 cut(s)	74, 462
BanII	GRGCYC	1 cut(s)	404
BauI	CACGAG	1 cut(s)	157
BbvI	GCAGC	5 cut(s)	350, 353, 527, 538, 782
BccI	CCATC	4 cut(s)	275, 618, 720, 821
BceAI	ACGGC	1 cut(s)	758
BciT130I	CCWGG	2 cut(s)	54, 375
BcnI	CCSGG	1 cut(s)	98
BfaI	CTAG	1 cut(s)	434
BfmI	CTRYAG	2 cut(s)	552, 756
BisI	GCNGC	5 cut(s)	339, 342, 516, 552, 771
BlsI	GCNGC	5 cut(s)	340, 343, 517, 553, 772
BmcAI	AGTACT	1 cut(s)	762
Bme1390I	CCNGG	3 cut(s)	54, 98, 375
BmgBI	CACGTC	1 cut(s)	226
BmgT120I	GGNCC	2 cut(s)	400, 401
BmiI	GGNNCC	1 cut(s)	402
BmrFI	CCNGG	3 cut(s)	54, 98, 375
BmsI	GCATC	5 cut(s)	55, 538, 709, 840, 922
BpuMI	CCSGG	1 cut(s)	98
Bsa29I	ATCGAT	2 cut(s)	60, 541
BsaJI	CCNNGG	4 cut(s)	52, 69, 96, 373
BsaWI	WCCGGW	1 cut(s)	205
Bsc4I	CCNNNNNNNGG	2 cut(s)	314, 379
Bse3DI	GCAATG	1 cut(s)	657
BseBI	CCWGG	2 cut(s)	54, 375
BseCI	ATCGAT	2 cut(s)	60, 541
BseDI	CCNNGG	4 cut(s)	52, 69, 96, 373
BseGI	GGATG	1 cut(s)	286
BseLI	CCNNNNNNNGG	2 cut(s)	314, 379
BseMI	GCAATG	1 cut(s)	657
BseSI	GKGCMC	1 cut(s)	404
BseXI	GCAGC	5 cut(s)	350, 353, 527, 538, 782
BshFI	GGCC	4 cut(s)	74, 402, 462, 524
BshVI	ATCGAT	2 cut(s)	60, 541
BsiSI	CCGG	2 cut(s)	98, 206
BslFI	GGGAC	1 cut(s)	79
BslI	CCNNNNNNNGG	2 cut(s)	314, 379
BsmFI	GGGAC	1 cut(s)	79
BsnI	GGCC	4 cut(s)	74, 402, 462, 524
Bsp120I	GGGCCC	1 cut(s)	400
Bsp1286I	GDGCHC	1 cut(s)	404
Bsp1407I	TGTACA	1 cut(s)	855
Bsp143I	GATC	5 cut(s)	33, 218, 538, 542, 751
Bsp19I	CCATGG	1 cut(s)	69
BspACI	CCGC	1 cut(s)	920
BspANI	GGCC	4 cut(s)	74, 402, 462, 524
BspDI	ATCGAT	2 cut(s)	60, 541
BspHI	TCATGA	2 cut(s)	715, 748
BspLI	GGNNCC	1 cut(s)	402
BspMAI	CTGCAG	2 cut(s)	556, 760
BspPI	GGATC	3 cut(s)	226, 546, 746
BsrDI	GCAATG	1 cut(s)	657
BsrGI	TGTACA	1 cut(s)	855
BssECI	CCNNGG	4 cut(s)	52, 69, 96, 373
BssMI	GATC	5 cut(s)	33, 218, 538, 542, 751
BssSI	CACGAG	1 cut(s)	157
BssT1I	CCWWGG	1 cut(s)	69
Bst2BI	CACGAG	1 cut(s)	157
Bst2UI	CCWGG	2 cut(s)	54, 375
Bst4CI	ACNGT	6 cut(s)	93, 333, 388, 910, 928, 943
BstAUI	TGTACA	1 cut(s)	855
BstC8I	GCNNGC	2 cut(s)	364, 648
BstDSI	CCRYGG	1 cut(s)	69
BstF5I	GGATG	1 cut(s)	286
BstKTI	GATC	5 cut(s)	36, 221, 541, 545, 754
BstMBI	GATC	5 cut(s)	33, 218, 538, 542, 751
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 521
BstNI	CCWGG	2 cut(s)	54, 375
BstNSI	RCATGY	1 cut(s)	573
BstSCI	CCNGG	3 cut(s)	52, 96, 373
BstSFI	CTRYAG	2 cut(s)	552, 756
BstSLI	GKGCMC	1 cut(s)	404
BstV1I	GCAGC	5 cut(s)	350, 353, 527, 538, 782
BstX2I	RGATCY	1 cut(s)	218
BstXI	CCANNNNNNTGG	2 cut(s)	82, 827
BstYI	RGATCY	1 cut(s)	218
Bsu15I	ATCGAT	2 cut(s)	60, 541
BsuRI	GGCC	4 cut(s)	74, 402, 462, 524
BsuTUI	ATCGAT	2 cut(s)	60, 541
BtgI	CCRYGG	1 cut(s)	69
BtrI	CACGTC	1 cut(s)	226
BtsCI	GGATG	1 cut(s)	286
BtsIMutI	CAGTG	2 cut(s)	384, 915
Cac8I	GCNNGC	2 cut(s)	364, 648
CaiI	CAGNNNCTG	2 cut(s)	551, 632
CciI	TCATGA	2 cut(s)	715, 748
Cfr13I	GGNCC	2 cut(s)	400, 401
ClaI	ATCGAT	2 cut(s)	60, 541
CseI	GACGC	1 cut(s)	638
Csp6I	GTAC	4 cut(s)	243, 700, 761, 856
CviAII	CATG	6 cut(s)	70, 272, 570, 716, 749, 799
CviQI	GTAC	4 cut(s)	243, 700, 761, 856
DpnI	GATC	5 cut(s)	35, 220, 540, 544, 753
DpnII	GATC	5 cut(s)	33, 218, 538, 542, 751
EaeI	YGGCCR	2 cut(s)	72, 460
Eco130I	CCWWGG	1 cut(s)	69
Eco24I	GRGCYC	1 cut(s)	404
Eco57I	CTGAAG	1 cut(s)	234
EcoO109I	RGGNCCY	1 cut(s)	401
EcoRII	CCWGG	2 cut(s)	52, 373
EcoT14I	CCWWGG	1 cut(s)	69
EcoT38I	GRGCYC	1 cut(s)	404
ErhI	CCWWGG	1 cut(s)	69
FaeI	CATG	6 cut(s)	73, 275, 573, 719, 752, 802
FalI	AAGNNNNNCTT	2 cut(s)	351, 383
FaqI	GGGAC	1 cut(s)	79
FatI	CATG	6 cut(s)	69, 271, 569, 715, 748, 798
Fnu4HI	GCNGC	5 cut(s)	339, 342, 516, 552, 771
FokI	GGATG	1 cut(s)	293
FriOI	GRGCYC	1 cut(s)	404
Fsp4HI	GCNGC	5 cut(s)	339, 342, 516, 552, 771
FspBI	CTAG	1 cut(s)	434
GluI	GCNGC	5 cut(s)	339, 342, 516, 552, 771
HaeIII	GGCC	4 cut(s)	74, 402, 462, 524
HapII	CCGG	2 cut(s)	98, 206
HgaI	GACGC	1 cut(s)	638
Hin1II	CATG	6 cut(s)	73, 275, 573, 719, 752, 802
HinfI	GANTC	3 cut(s)	816, 843, 974
HpaII	CCGG	2 cut(s)	98, 206
HphI	GGTGA	4 cut(s)	784, 890, 895, 934
Hpy166II	GTNNAC	1 cut(s)	700
Hpy188I	TCNGA	1 cut(s)	547
Hpy188III	TCNNGA	4 cut(s)	622, 716, 749, 820
Hpy8I	GTNNAC	1 cut(s)	700
HpyAV	CCTTC	3 cut(s)	209, 792, 907
HpyCH4III	ACNGT	6 cut(s)	93, 333, 388, 910, 928, 943
HpyCH4IV	ACGT	1 cut(s)	225
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 521
HpySE526I	ACGT	1 cut(s)	225
Hsp92II	CATG	6 cut(s)	73, 275, 573, 719, 752, 802
Kzo9I	GATC	5 cut(s)	33, 218, 538, 542, 751
LmnI	GCTCC	1 cut(s)	575
Lsp1109I	GCAGC	5 cut(s)	350, 353, 527, 538, 782
LweI	GCATC	5 cut(s)	55, 538, 709, 840, 922
MaeI	CTAG	1 cut(s)	434
MaeII	ACGT	1 cut(s)	225
MaeIII	GTNAC	6 cut(s)	87, 226, 382, 604, 883, 922
MalI	GATC	5 cut(s)	35, 220, 540, 544, 753
MboI	GATC	5 cut(s)	33, 218, 538, 542, 751
MboII	GAAGA	3 cut(s)	43, 464, 737
MfeI	CAATTG	1 cut(s)	324
MflI	RGATCY	1 cut(s)	218
MhlI	GDGCHC	1 cut(s)	404
MlsI	TGGCCA	2 cut(s)	74, 462
MluCI	AATT	6 cut(s)	117, 298, 324, 687, 849, 950
MluNI	TGGCCA	2 cut(s)	74, 462
MlyI	GAGTC	2 cut(s)	825, 837
MmeI	TCCRAC	1 cut(s)	159
MnlI	CCTC	7 cut(s)	12, 175, 414, 514, 796, 833, 874
Mox20I	TGGCCA	2 cut(s)	74, 462
MscI	TGGCCA	2 cut(s)	74, 462
MseI	TTAA	3 cut(s)	600, 777, 979
MslI	CAYNNNNRTG	4 cut(s)	80, 717, 797, 944
Msp20I	TGGCCA	2 cut(s)	74, 462
MspI	CCGG	2 cut(s)	98, 206
MspR9I	CCNGG	3 cut(s)	54, 98, 375
MunI	CAATTG	1 cut(s)	324
MvaI	CCWGG	2 cut(s)	54, 375
MwoI	GCNNNNNNNGC	2 cut(s)	11, 521
NciI	CCSGG	1 cut(s)	98
NcoI	CCATGG	1 cut(s)	69
NdeII	GATC	5 cut(s)	33, 218, 538, 542, 751
NlaIII	CATG	6 cut(s)	73, 275, 573, 719, 752, 802
NlaIV	GGNNCC	1 cut(s)	402
NmuCI	GTSAC	5 cut(s)	226, 382, 604, 883, 922
NspI	RCATGY	1 cut(s)	573
OliI	CACNNNNGTG	1 cut(s)	944
PagI	TCATGA	2 cut(s)	715, 748
PciI	ACATGT	1 cut(s)	569
PkrI	GCNGC	5 cut(s)	340, 343, 517, 553, 772
PleI	GAGTC	2 cut(s)	824, 837
PpsI	GAGTC	2 cut(s)	824, 837
PscI	ACATGT	1 cut(s)	569
PshBI	ATTAAT	1 cut(s)	600
Psp6I	CCWGG	2 cut(s)	52, 373
PspGI	CCWGG	2 cut(s)	52, 373
PspN4I	GGNNCC	1 cut(s)	402
PspOMI	GGGCCC	1 cut(s)	400
PspPI	GGNCC	2 cut(s)	400, 401
PstI	CTGCAG	2 cut(s)	556, 760
PstNI	CAGNNNCTG	2 cut(s)	551, 632
PsuI	RGATCY	1 cut(s)	218
RsaI	GTAC	4 cut(s)	244, 701, 762, 857
RsaNI	GTAC	4 cut(s)	243, 700, 761, 856
RseI	CAYNNNNRTG	4 cut(s)	80, 717, 797, 944
SaqAI	TTAA	3 cut(s)	600, 777, 979
SatI	GCNGC	5 cut(s)	339, 342, 516, 552, 771
Sau3AI	GATC	5 cut(s)	33, 218, 538, 542, 751
Sau96I	GGNCC	2 cut(s)	400, 401
ScaI	AGTACT	1 cut(s)	762
SchI	GAGTC	2 cut(s)	825, 837
ScrFI	CCNGG	3 cut(s)	54, 98, 375
SduI	GDGCHC	1 cut(s)	404
SetI	ASST	9 cut(s)	186, 228, 244, 346, 384, 797, 875, 885, 918
SfaNI	GCATC	5 cut(s)	55, 538, 709, 840, 922
SfcI	CTRYAG	2 cut(s)	552, 756
SmiMI	CAYNNNNRTG	4 cut(s)	80, 717, 797, 944
Sse9I	AATT	6 cut(s)	117, 298, 324, 687, 849, 950
SsiI	CCGC	1 cut(s)	920
SspI	AATATT	1 cut(s)	415
SspMI	CTAG	1 cut(s)	434
StyD4I	CCNGG	3 cut(s)	52, 96, 373
StyI	CCWWGG	1 cut(s)	69
TaaI	ACNGT	6 cut(s)	93, 333, 388, 910, 928, 943
TaiI	ACGT	1 cut(s)	228
TaqI	TCGA	3 cut(s)	60, 541, 814
TasI	AATT	6 cut(s)	117, 298, 324, 687, 849, 950
TatI	WGTACW	3 cut(s)	699, 760, 855
Tru1I	TTAA	3 cut(s)	600, 777, 979
Tru9I	TTAA	3 cut(s)	600, 777, 979
TscAI	CASTG	2 cut(s)	391, 915
TseFI	GTSAC	5 cut(s)	226, 382, 604, 883, 922
TseI	GCWGC	5 cut(s)	338, 341, 515, 551, 770
Tsp45I	GTSAC	5 cut(s)	226, 382, 604, 883, 922
TspDTI	ATGAA	2 cut(s)	260, 737
TspGWI	ACGGA	1 cut(s)	902
TspRI	CASTG	2 cut(s)	391, 915
VspI	ATTAAT	1 cut(s)	600
XapI	RAATTY	2 cut(s)	298, 687
XceI	RCATGY	1 cut(s)	573
XspI	CTAG	1 cut(s)	434
ZrmI	AGTACT	1 cut(s)	762

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.