Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0010784

Physical Location & Seq

Genomic Coordinates Reverse (-)

22168986 .. 22173675

Gene Structure 4690 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G270100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 969 bp

ATGGCAGTGACTGAACCCAAGAAGATCATCATTGACACCGACCCTGGCATCGATGATGCCATGGCCATCTTTGTGGCATTACAATCCCCGGAGGTGGAAGTGATTGGACTTACTACCATATATGGAAACGTTTATACGACTCTGGCCACAAGAAATGCCTTGCATTTGTTGGAGGTTGCAGGGAGAACTGATATTCCTGTGGCTGAAGGATCTCATGTCACAATAACTAAAGGAACAAAACTTCGTATTGCTGATTTTGTTCATGGTGCGGATGGACTTGGCAACCAAAATTTCCCCCCACCGAAAGGAAAGCCAATTGAACAGTCAGCAGCAGCTTTTCTGGTTGAACAAGCAAACCTTTACCCTGGAAAAGTCACTGTGGTAGCATTGGGCCCACTTACAAATATTGCACTGGCTACTCAACTAGAACCTGCATTTGCAAAGAACATTGGGCAGATTGTTCTTCTTGGTGGTGCTTTTGCAGTCAATGGGAATGTGAATCCAGCAGCAGAGGCCAACATATTTGGGGATCCAGATGCTGCAGATATAGTATTTACAAGTGGAGCAGATATTTTGGGTGTGGGGATAAATGTTACCCATCAAGTTGTATTGACAGATGCTGATCGGGAAAAGTTGGCAAGGTCAAATGGAAAATTTGCTCAGTACTTGTGCAAAGTTTTAGATGTGTACTTCTCCTACCATCGTGATGCCTATAGCACAAAAGGAGTTTACCTTCATGATCCCACAACACTTCTTGCAGCTGTTAATCCTTCACTCATCACTTACACAGAGGGTGTTGTTAGAGTACAGACAAACGGCATCACAAGAGGACTCACAATTTTGTACAACAAACAGAAAAGGTTTGGTGAAGTGACGGAGTGGTCTGATAAACCCACGGTGAAGGTTGCAGTGACGGTTGATGCTCCCGCAGTAGTCAACTTGGTTATGGAACGCCTCATGGACTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006148 GO:0006152 GO:0006725 GO:0006807 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0008194 GO:0008477 GO:0009056 GO:0009116 GO:0009119 GO:0009164 GO:0009987 GO:0010150 GO:0016740 GO:0016757 GO:0016758 GO:0016787 GO:0016798 GO:0016799 GO:0019439 GO:0032501 GO:0032502 GO:0034641 GO:0034655 GO:0034656 GO:0035251 GO:0042278 GO:0042454 GO:0044237 GO:0044238 GO:0044248 GO:0044270 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046102 GO:0046128 GO:0046130 GO:0046483 GO:0046527 GO:0046700 GO:0047724 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0055086 GO:0071704 GO:0072521 GO:0072523 GO:0090693 GO:0099402 GO:1901135 GO:1901136 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575 GO:1901657 GO:1901658

KEGG Pathways

Metabolic & Signaling

ko00240 ko00760 map00240 map00760

Pfam Domains

Protein Families

IU_nuc_hydro

Protein Analysis

323

Amino Acids

34.35

Weight (kDa)

5.39

Isoelectric Point (pI)

20.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010784)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05620 AT1G05620
fragaria_vesca	FvH4_1g00210
malus_domestica	MD00G1087000.v1.1 MD15G1142900.v1.1
prunus_persica	Prupe.7G270100_v2.0.a1 Prupe.7G270100_v2.0.a1
pyrus_communis	pycom15g12900 pycom290g00180
rosa_chinensis	RchiOBHm_Chr2g0084501
rosa_multiflora	Rmu_co8418457.1_g000001 Rmu_sc0009647.1_g000005
rosa_roxburghii	Rroxscaffold_2G00156010
rosa_rugosa	Rorug01G0454600 Rorug01G0454600
rosa_samantha	Rh2AG002600 Rh2BG002200 Rh2CG002700 Rh2DG002700
rosa_wichuraiana	Rw2G000230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	880
Acc36I	ACCTGC	1 cut(s)	439
AciI	CCGC	2 cut(s)	269, 927
AclI	AACGTT	1 cut(s)	129
AclWI	GGATC	4 cut(s)	217, 524, 537, 734
AcoI	YGGCCR	2 cut(s)	63, 144
AcsI	RAATTY	2 cut(s)	289, 653
AcuI	CTGAAG	1 cut(s)	225
AfaI	GTAC	4 cut(s)	665, 689, 807, 845
AfiI	CCNNNNNNNGG	2 cut(s)	94, 305
AgsI	TTSAA	2 cut(s)	320, 347
AjnI	CCWGG	2 cut(s)	43, 364
AloI	GAACNNNNNNTCC	2 cut(s)	178, 210
AluBI	AGCT	2 cut(s)	335, 761
AluI	AGCT	2 cut(s)	335, 761
AlwI	GGATC	4 cut(s)	217, 524, 537, 734
AlwNI	CAGNNNCTG	3 cut(s)	11, 539, 620
AoxI	GGCC	4 cut(s)	63, 144, 391, 513
ApaI	GGGCCC	1 cut(s)	395
ApeKI	GCWGC	5 cut(s)	329, 332, 506, 539, 758
ApoI	RAATTY	2 cut(s)	289, 653
AspS9I	GGNCC	2 cut(s)	391, 392
AsuC2I	CCSGG	1 cut(s)	89
AsuHPI	GGTGA	2 cut(s)	878, 910
BaeGI	GKGCMC	1 cut(s)	395
BalI	TGGCCA	2 cut(s)	65, 146
BamHI	GGATCC	1 cut(s)	529
BanII	GRGCYC	1 cut(s)	395
BbvI	GCAGC	5 cut(s)	341, 344, 518, 526, 770
BccI	CCATC	4 cut(s)	74, 266, 606, 708
BceAI	ACGGC	1 cut(s)	832
BciT130I	CCWGG	2 cut(s)	45, 366
BcnI	CCSGG	1 cut(s)	89
BfaI	CTAG	1 cut(s)	425
BfmI	CTRYAG	2 cut(s)	540, 712
BfuAI	ACCTGC	1 cut(s)	439
BisI	GCNGC	5 cut(s)	330, 333, 507, 540, 759
BlsI	GCNGC	5 cut(s)	331, 334, 508, 541, 760
BmcAI	AGTACT	1 cut(s)	665
Bme1390I	CCNGG	3 cut(s)	45, 89, 366
BmgT120I	GGNCC	2 cut(s)	391, 392
BmiI	GGNNCC	2 cut(s)	393, 531
BmrFI	CCNGG	3 cut(s)	45, 89, 366
BmsI	GCATC	7 cut(s)	46, 57, 526, 607, 697, 828, 910
BpuMI	CCSGG	1 cut(s)	89
Bsa29I	ATCGAT	1 cut(s)	51
BsaBI	GATNNNNATC	1 cut(s)	621
BsaJI	CCNNGG	5 cut(s)	43, 60, 87, 364, 894
Bsc4I	CCNNNNNNNGG	2 cut(s)	94, 305
Bse1I	ACTGG	1 cut(s)	417
Bse8I	GATNNNNATC	1 cut(s)	621
BseBI	CCWGG	2 cut(s)	45, 366
BseCI	ATCGAT	1 cut(s)	51
BseDI	CCNNGG	5 cut(s)	43, 60, 87, 364, 894
BseGI	GGATG	1 cut(s)	277
BseJI	GATNNNNATC	1 cut(s)	621
BseLI	CCNNNNNNNGG	2 cut(s)	94, 305
BseMII	CTCAG	1 cut(s)	674
BseNI	ACTGG	1 cut(s)	417
BseSI	GKGCMC	1 cut(s)	395
BseXI	GCAGC	5 cut(s)	341, 344, 518, 526, 770
BshFI	GGCC	4 cut(s)	65, 146, 393, 515
BshVI	ATCGAT	1 cut(s)	51
BsiSI	CCGG	1 cut(s)	89
BslI	CCNNNNNNNGG	2 cut(s)	94, 305
BsnI	GGCC	4 cut(s)	65, 146, 393, 515
Bsp120I	GGGCCC	1 cut(s)	391
Bsp1286I	GDGCHC	1 cut(s)	395
Bsp1407I	TGTACA	1 cut(s)	843
Bsp143I	GATC	5 cut(s)	24, 209, 529, 622, 739
Bsp19I	CCATGG	1 cut(s)	60
BspACI	CCGC	2 cut(s)	269, 927
BspANI	GGCC	4 cut(s)	65, 146, 393, 515
BspCNI	CTCAG	1 cut(s)	673
BspDI	ATCGAT	1 cut(s)	51
BspHI	TCATGA	1 cut(s)	736
BspLI	GGNNCC	2 cut(s)	393, 531
BspMAI	CTGCAG	1 cut(s)	544
BspMI	ACCTGC	1 cut(s)	439
BspPI	GGATC	4 cut(s)	217, 524, 537, 734
BsrGI	TGTACA	1 cut(s)	843
BsrI	ACTGG	1 cut(s)	417
BssECI	CCNNGG	5 cut(s)	43, 60, 87, 364, 894
BssMI	GATC	5 cut(s)	24, 209, 529, 622, 739
BssT1I	CCWWGG	1 cut(s)	60
Bst2UI	CCWGG	2 cut(s)	45, 366
Bst4CI	ACNGT	4 cut(s)	324, 379, 898, 916
BstAUI	TGTACA	1 cut(s)	843
BstDEI	CTNAG	1 cut(s)	660
BstDSI	CCRYGG	2 cut(s)	60, 894
BstF5I	GGATG	1 cut(s)	277
BstKTI	GATC	5 cut(s)	27, 212, 532, 625, 742
BstMBI	GATC	5 cut(s)	24, 209, 529, 622, 739
BstMWI	GCNNNNNNNGC	1 cut(s)	512
BstNI	CCWGG	2 cut(s)	45, 366
BstSCI	CCNGG	3 cut(s)	43, 87, 364
BstSFI	CTRYAG	2 cut(s)	540, 712
BstSLI	GKGCMC	1 cut(s)	395
BstV1I	GCAGC	5 cut(s)	341, 344, 518, 526, 770
BstX2I	RGATCY	2 cut(s)	209, 529
BstXI	CCANNNNNNTGG	1 cut(s)	73
BstYI	RGATCY	2 cut(s)	209, 529
Bsu15I	ATCGAT	1 cut(s)	51
BsuRI	GGCC	4 cut(s)	65, 146, 393, 515
BsuTUI	ATCGAT	1 cut(s)	51
BtgI	CCRYGG	2 cut(s)	60, 894
BtsCI	GGATG	1 cut(s)	277
BtsI	GCAGTG	2 cut(s)	12, 915
BtsIMutI	CAGTG	4 cut(s)	12, 375, 410, 915
BveI	ACCTGC	1 cut(s)	439
CaiI	CAGNNNCTG	3 cut(s)	11, 539, 620
CciI	TCATGA	1 cut(s)	736
Cfr13I	GGNCC	2 cut(s)	391, 392
ClaI	ATCGAT	1 cut(s)	51
Csp6I	GTAC	4 cut(s)	664, 688, 806, 844
CviAII	CATG	5 cut(s)	61, 215, 263, 737, 958
CviJI	RGCY	9 cut(s)	65, 146, 203, 313, 335, 393, 416, 515, 761
CviKI_1	RGCY	9 cut(s)	65, 146, 203, 313, 335, 393, 416, 515, 761
CviQI	GTAC	4 cut(s)	664, 688, 806, 844
DdeI	CTNAG	1 cut(s)	660
DpnI	GATC	5 cut(s)	26, 211, 531, 624, 741
DpnII	GATC	5 cut(s)	24, 209, 529, 622, 739
DrdI	GACNNNNNNGTC	1 cut(s)	880
DseDI	GACNNNNNNGTC	1 cut(s)	880
EaeI	YGGCCR	2 cut(s)	63, 144
Eco130I	CCWWGG	1 cut(s)	60
Eco24I	GRGCYC	1 cut(s)	395
Eco57I	CTGAAG	1 cut(s)	225
EcoRII	CCWGG	2 cut(s)	43, 364
EcoT14I	CCWWGG	1 cut(s)	60
EcoT38I	GRGCYC	1 cut(s)	395
ErhI	CCWWGG	1 cut(s)	60
FaeI	CATG	5 cut(s)	64, 218, 266, 740, 961
FalI	AAGNNNNNCTT	2 cut(s)	342, 374
FatI	CATG	5 cut(s)	60, 214, 262, 736, 957
FauI	CCCGC	1 cut(s)	934
Fnu4HI	GCNGC	5 cut(s)	330, 333, 507, 540, 759
FokI	GGATG	1 cut(s)	284
FriOI	GRGCYC	1 cut(s)	395
Fsp4HI	GCNGC	5 cut(s)	330, 333, 507, 540, 759
FspBI	CTAG	1 cut(s)	425
GluI	GCNGC	5 cut(s)	330, 333, 507, 540, 759
HaeIII	GGCC	4 cut(s)	65, 146, 393, 515
HapII	CCGG	1 cut(s)	89
Hin1II	CATG	5 cut(s)	64, 218, 266, 740, 961
HincII	GTYRAC	1 cut(s)	937
HindII	GTYRAC	1 cut(s)	937
HinfI	GANTC	4 cut(s)	139, 499, 831, 962
HpaII	CCGG	1 cut(s)	89
HphI	GGTGA	2 cut(s)	878, 910
Hpy166II	GTNNAC	3 cut(s)	688, 730, 937
Hpy188I	TCNGA	1 cut(s)	886
Hpy188III	TCNNGA	5 cut(s)	533, 626, 704, 737, 966
Hpy8I	GTNNAC	3 cut(s)	688, 730, 937
HpyAV	CCTTC	4 cut(s)	200, 743, 780, 895
HpyCH4III	ACNGT	4 cut(s)	324, 379, 898, 916
HpyCH4IV	ACGT	1 cut(s)	129
HpyF10VI	GCNNNNNNNGC	1 cut(s)	512
HpyF3I	CTNAG	1 cut(s)	660
HpySE526I	ACGT	1 cut(s)	129
Hsp92II	CATG	5 cut(s)	64, 218, 266, 740, 961
Kzo9I	GATC	5 cut(s)	24, 209, 529, 622, 739
LmnI	GCTCC	2 cut(s)	563, 928
Lsp1109I	GCAGC	5 cut(s)	341, 344, 518, 526, 770
LweI	GCATC	7 cut(s)	46, 57, 526, 607, 697, 828, 910
MaeI	CTAG	1 cut(s)	425
MaeII	ACGT	1 cut(s)	129
MaeIII	GTNAC	6 cut(s)	7, 217, 373, 592, 871, 910
MalI	GATC	5 cut(s)	26, 211, 531, 624, 741
MboI	GATC	5 cut(s)	24, 209, 529, 622, 739
MboII	GAAGA	2 cut(s)	34, 455
MfeI	CAATTG	1 cut(s)	315
MflI	RGATCY	2 cut(s)	209, 529
MhlI	GDGCHC	1 cut(s)	395
MlsI	TGGCCA	2 cut(s)	65, 146
MluCI	AATT	4 cut(s)	289, 315, 653, 837
MluNI	TGGCCA	2 cut(s)	65, 146
MlyI	GAGTC	3 cut(s)	133, 825, 956
MmeI	TCCRAC	1 cut(s)	150
MnlI	CCTC	6 cut(s)	85, 166, 505, 784, 821, 965
Mox20I	TGGCCA	2 cut(s)	65, 146
MscI	TGGCCA	2 cut(s)	65, 146
MseI	TTAA	1 cut(s)	765
MslI	CAYNNNNRTG	2 cut(s)	71, 705
Msp20I	TGGCCA	2 cut(s)	65, 146
MspA1I	CMGCKG	1 cut(s)	761
MspI	CCGG	1 cut(s)	89
MspR9I	CCNGG	3 cut(s)	45, 89, 366
MunI	CAATTG	1 cut(s)	315
MvaI	CCWGG	2 cut(s)	45, 366
MwoI	GCNNNNNNNGC	1 cut(s)	512
NciI	CCSGG	1 cut(s)	89
NcoI	CCATGG	1 cut(s)	60
NdeII	GATC	5 cut(s)	24, 209, 529, 622, 739
NlaIII	CATG	5 cut(s)	64, 218, 266, 740, 961
NlaIV	GGNNCC	2 cut(s)	393, 531
NmuCI	GTSAC	5 cut(s)	7, 217, 373, 871, 910
PagI	TCATGA	1 cut(s)	736
PfeI	GAWTC	1 cut(s)	499
PkrI	GCNGC	5 cut(s)	331, 334, 508, 541, 760
PleI	GAGTC	3 cut(s)	133, 825, 956
PpsI	GAGTC	3 cut(s)	133, 825, 956
Psp1406I	AACGTT	1 cut(s)	129
Psp6I	CCWGG	2 cut(s)	43, 364
PspGI	CCWGG	2 cut(s)	43, 364
PspN4I	GGNNCC	2 cut(s)	393, 531
PspOMI	GGGCCC	1 cut(s)	391
PspPI	GGNCC	2 cut(s)	391, 392
PstI	CTGCAG	1 cut(s)	544
PstNI	CAGNNNCTG	3 cut(s)	11, 539, 620
PsuI	RGATCY	2 cut(s)	209, 529
PvuII	CAGCTG	1 cut(s)	761
RsaI	GTAC	4 cut(s)	665, 689, 807, 845
RsaNI	GTAC	4 cut(s)	664, 688, 806, 844
RseI	CAYNNNNRTG	2 cut(s)	71, 705
SaqAI	TTAA	1 cut(s)	765
SatI	GCNGC	5 cut(s)	330, 333, 507, 540, 759
Sau3AI	GATC	5 cut(s)	24, 209, 529, 622, 739
Sau96I	GGNCC	2 cut(s)	391, 392
ScaI	AGTACT	1 cut(s)	665
SchI	GAGTC	3 cut(s)	133, 825, 956
ScrFI	CCNGG	3 cut(s)	45, 89, 366
SduI	GDGCHC	1 cut(s)	395
SfaNI	GCATC	7 cut(s)	46, 57, 526, 607, 697, 828, 910
SfcI	CTRYAG	2 cut(s)	540, 712
SmiMI	CAYNNNNRTG	2 cut(s)	71, 705
Sse9I	AATT	4 cut(s)	289, 315, 653, 837
SsiI	CCGC	2 cut(s)	269, 927
SspI	AATATT	1 cut(s)	406
SspMI	CTAG	1 cut(s)	425
StyD4I	CCNGG	3 cut(s)	43, 87, 364
StyI	CCWWGG	1 cut(s)	60
TaaI	ACNGT	4 cut(s)	324, 379, 898, 916
TaiI	ACGT	1 cut(s)	132
TaqI	TCGA	1 cut(s)	51
TasI	AATT	4 cut(s)	289, 315, 653, 837
TatI	WGTACW	4 cut(s)	663, 687, 805, 843
TfiI	GAWTC	1 cut(s)	499
Tru1I	TTAA	1 cut(s)	765
Tru9I	TTAA	1 cut(s)	765
TscAI	CASTG	4 cut(s)	12, 382, 417, 915
TseFI	GTSAC	5 cut(s)	7, 217, 373, 871, 910
TseI	GCWGC	5 cut(s)	329, 332, 506, 539, 758
Tsp45I	GTSAC	5 cut(s)	7, 217, 373, 871, 910
TspDTI	ATGAA	2 cut(s)	251, 725
TspGWI	ACGGA	1 cut(s)	890
TspRI	CASTG	4 cut(s)	12, 382, 417, 915
XapI	RAATTY	2 cut(s)	289, 653
XspI	CTAG	1 cut(s)	425
ZrmI	AGTACT	1 cut(s)	665

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.