Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8418457.1

Orthogroup ID

OG0010784

Physical Location & Seq

Genomic Coordinates Reverse (-)

240 .. 1311

Gene Structure 1072 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8418457.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

atggttgctggaaaacttgatgattgtaattatttttgtacttttatttattttacatttattctgacacatgaagatgctgatcgggacaagttgaccaagtcaaatggaaaatttgctcagtacctgtgcaaaattttagatgtgtacttctcttaccatcatgatgcctatagcacgaaaggagtttaccttcatgatcctacagcccttctggcagctgttaatccttcacttctaacttacacagagggtgttgttagagttcagacaagtggcatcacaagagggctcacaactttgtataacaaacagaaaaggttcggtgaagtcacagaatggtgtgataaacccacggcgaaggtagcagttactgttgatgctcccacagtggtcaacttggtcatggaacggctgatggactcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006148 GO:0006152 GO:0006725 GO:0006807 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0008194 GO:0008477 GO:0009056 GO:0009116 GO:0009119 GO:0009164 GO:0009987 GO:0010150 GO:0016740 GO:0016757 GO:0016758 GO:0016787 GO:0016798 GO:0016799 GO:0019439 GO:0032501 GO:0032502 GO:0034641 GO:0034655 GO:0034656 GO:0035251 GO:0042278 GO:0042454 GO:0044237 GO:0044238 GO:0044248 GO:0044270 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046102 GO:0046128 GO:0046130 GO:0046483 GO:0046527 GO:0046700 GO:0047724 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0055086 GO:0071704 GO:0072521 GO:0072523 GO:0090693 GO:0099402 GO:1901135 GO:1901136 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575 GO:1901657 GO:1901658

KEGG Pathways

Metabolic & Signaling

ko00240 ko00760 map00240 map00760

Pfam Domains

Protein Families

IU_nuc_hydro

Protein Analysis

142

Amino Acids

16.05

Weight (kDa)

6.4

Isoelectric Point (pI)

17.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010784)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05620 AT1G05620
fragaria_vesca	FvH4_1g00210
malus_domestica	MD00G1087000.v1.1 MD15G1142900.v1.1
prunus_persica	Prupe.7G270100_v2.0.a1 Prupe.7G270100_v2.0.a1
pyrus_communis	pycom15g12900 pycom290g00180
rosa_chinensis	RchiOBHm_Chr2g0084501
rosa_multiflora	Rmu_co8418457.1_g000001 Rmu_sc0009647.1_g000005
rosa_roxburghii	Rroxscaffold_2G00156010
rosa_rugosa	Rorug01G0454600 Rorug01G0454600
rosa_samantha	Rh2AG002600 Rh2BG002200 Rh2CG002700 Rh2DG002700
rosa_wichuraiana	Rw2G000230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	194
AcsI	RAATTY	2 cut(s)	113, 135
AfaI	GTAC	3 cut(s)	40, 125, 149
AluBI	AGCT	1 cut(s)	221
AluI	AGCT	1 cut(s)	221
AlwI	GGATC	1 cut(s)	194
AlwNI	CAGNNNCTG	2 cut(s)	127, 374
ApeKI	GCWGC	1 cut(s)	218
ApoI	RAATTY	2 cut(s)	113, 135
Asp700I	GAANNNNTTC	1 cut(s)	320
AsuHPI	GGTGA	1 cut(s)	338
BanII	GRGCYC	1 cut(s)	294
BbvI	GCAGC	1 cut(s)	230
BccI	CCATC	2 cut(s)	168, 412
BceAI	ACGGC	1 cut(s)	372
BfmI	CTRYAG	2 cut(s)	172, 204
BglI	GCCNNNNNGGC	1 cut(s)	215
BisI	GCNGC	1 cut(s)	219
BlsI	GCNGC	1 cut(s)	220
BmsI	GCATC	4 cut(s)	67, 157, 288, 370
BsaBI	GATNNNNATC	1 cut(s)	81
BsaJI	CCNNGG	1 cut(s)	354
Bse8I	GATNNNNATC	1 cut(s)	81
BseDI	CCNNGG	1 cut(s)	354
BseJI	GATNNNNATC	1 cut(s)	81
BseMII	CTCAG	1 cut(s)	134
BseXI	GCAGC	1 cut(s)	230
BslFI	GGGAC	1 cut(s)	101
BsmFI	GGGAC	1 cut(s)	101
Bsp1286I	GDGCHC	1 cut(s)	294
Bsp143I	GATC	2 cut(s)	82, 199
BspCNI	CTCAG	1 cut(s)	133
BspHI	TCATGA	2 cut(s)	163, 196
BspPI	GGATC	1 cut(s)	194
BssECI	CCNNGG	1 cut(s)	354
BssMI	GATC	2 cut(s)	82, 199
Bst4CI	ACNGT	2 cut(s)	376, 391
BstDEI	CTNAG	1 cut(s)	120
BstDSI	CCRYGG	1 cut(s)	354
BstKTI	GATC	2 cut(s)	85, 202
BstMBI	GATC	2 cut(s)	82, 199
BstMWI	GCNNNNNNNGC	2 cut(s)	215, 365
BstSFI	CTRYAG	2 cut(s)	172, 204
BstV1I	GCAGC	1 cut(s)	230
BtgI	CCRYGG	1 cut(s)	354
BtsIMutI	CAGTG	1 cut(s)	396
CaiI	CAGNNNCTG	2 cut(s)	127, 374
CciI	TCATGA	2 cut(s)	163, 196
Csp6I	GTAC	3 cut(s)	39, 124, 148
CviAII	CATG	4 cut(s)	71, 164, 197, 406
CviJI	RGCY	4 cut(s)	209, 221, 292, 415
CviKI_1	RGCY	4 cut(s)	209, 221, 292, 415
CviQI	GTAC	3 cut(s)	39, 124, 148
DdeI	CTNAG	1 cut(s)	120
DpnI	GATC	2 cut(s)	84, 201
DpnII	GATC	2 cut(s)	82, 199
Eco24I	GRGCYC	1 cut(s)	294
EcoT38I	GRGCYC	1 cut(s)	294
FaeI	CATG	4 cut(s)	74, 167, 200, 409
FaiI	YATR	6 cut(s)	72, 165, 174, 198, 306, 407
FaqI	GGGAC	1 cut(s)	101
FatI	CATG	4 cut(s)	70, 163, 196, 405
Fnu4HI	GCNGC	1 cut(s)	219
FriOI	GRGCYC	1 cut(s)	294
Fsp4HI	GCNGC	1 cut(s)	219
GluI	GCNGC	1 cut(s)	219
Hin1II	CATG	4 cut(s)	74, 167, 200, 409
HincII	GTYRAC	2 cut(s)	96, 397
HindII	GTYRAC	2 cut(s)	96, 397
HinfI	GANTC	1 cut(s)	422
HphI	GGTGA	1 cut(s)	338
Hpy166II	GTNNAC	4 cut(s)	96, 148, 190, 397
Hpy188I	TCNGA	2 cut(s)	66, 270
Hpy188III	TCNNGA	4 cut(s)	86, 164, 197, 426
Hpy8I	GTNNAC	4 cut(s)	96, 148, 190, 397
HpyAV	CCTTC	4 cut(s)	203, 221, 240, 355
HpyCH4III	ACNGT	2 cut(s)	376, 391
HpyCH4V	TGCA	1 cut(s)	132
HpyF10VI	GCNNNNNNNGC	2 cut(s)	215, 365
HpyF3I	CTNAG	1 cut(s)	120
Hsp92II	CATG	4 cut(s)	74, 167, 200, 409
Kzo9I	GATC	2 cut(s)	82, 199
LmnI	GCTCC	1 cut(s)	388
LpnPI	CCDG	2 cut(s)	140, 200
Lsp1109I	GCAGC	1 cut(s)	230
LweI	GCATC	4 cut(s)	67, 157, 288, 370
MaeIII	GTNAC	2 cut(s)	331, 370
MalI	GATC	2 cut(s)	84, 201
MboI	GATC	2 cut(s)	82, 199
MboII	GAAGA	1 cut(s)	86
MhlI	GDGCHC	1 cut(s)	294
MluCI	AATT	3 cut(s)	28, 113, 135
MlyI	GAGTC	1 cut(s)	416
MnlI	CCTC	2 cut(s)	244, 281
MroXI	GAANNNNTTC	1 cut(s)	320
MseI	TTAA	1 cut(s)	225
MslI	CAYNNNNRTG	2 cut(s)	75, 165
MspA1I	CMGCKG	1 cut(s)	221
MwoI	GCNNNNNNNGC	2 cut(s)	215, 365
NdeII	GATC	2 cut(s)	82, 199
NlaIII	CATG	4 cut(s)	74, 167, 200, 409
NmuCI	GTSAC	1 cut(s)	331
PagI	TCATGA	2 cut(s)	163, 196
PdmI	GAANNNNTTC	1 cut(s)	320
PflFI	GACNNNGTC	1 cut(s)	100
PkrI	GCNGC	1 cut(s)	220
PleI	GAGTC	1 cut(s)	416
PpsI	GAGTC	1 cut(s)	416
PstNI	CAGNNNCTG	2 cut(s)	127, 374
PsyI	GACNNNGTC	1 cut(s)	100
PvuII	CAGCTG	1 cut(s)	221
RsaI	GTAC	3 cut(s)	40, 125, 149
RsaNI	GTAC	3 cut(s)	39, 124, 148
RseI	CAYNNNNRTG	2 cut(s)	75, 165
SaqAI	TTAA	1 cut(s)	225
SatI	GCNGC	1 cut(s)	219
Sau3AI	GATC	2 cut(s)	82, 199
SchI	GAGTC	1 cut(s)	416
SduI	GDGCHC	1 cut(s)	294
SetI	ASST	5 cut(s)	129, 195, 223, 323, 366
SfaNI	GCATC	4 cut(s)	67, 157, 288, 370
SfcI	CTRYAG	2 cut(s)	172, 204
SmiMI	CAYNNNNRTG	2 cut(s)	75, 165
Sse9I	AATT	3 cut(s)	28, 113, 135
TaaI	ACNGT	2 cut(s)	376, 391
TasI	AATT	3 cut(s)	28, 113, 135
TatI	WGTACW	2 cut(s)	38, 147
Tru1I	TTAA	1 cut(s)	225
Tru9I	TTAA	1 cut(s)	225
TscAI	CASTG	1 cut(s)	396
TseFI	GTSAC	1 cut(s)	331
TseI	GCWGC	1 cut(s)	218
Tsp45I	GTSAC	1 cut(s)	331
TspDTI	ATGAA	2 cut(s)	87, 185
TspRI	CASTG	1 cut(s)	396
Tth111I	GACNNNGTC	1 cut(s)	100
XapI	RAATTY	2 cut(s)	113, 135
XmnI	GAANNNNTTC	1 cut(s)	320

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.