Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0010784

Physical Location & Seq

Genomic Coordinates Reverse (-)

202985 .. 206208

Gene Structure 3224 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G000230.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 969 bp

ATGGCAGTGAATGAACCCAAGAAGATCATCATCGACACCGATCCTGGTATCGATGATGCCATGGCCATATTCGTGGCATTGAAGTCGCCAGAGGTGGAAGTGATTGGACTGACAACTATCTATGGGAATGTTTATACAACTCTGGCCACGAGAAATGCCTTGCATTTGTTGGAGTTTGCAGGGAGAACTGATATTCCCGTGGCTGAAGGATCCCATGTCACAATAACTCAAGGTACAAAACTTCGTATTGCTGATTTTGTTCATGGTACGGATGGACTTGGAAACCAAAACTTCCCTCCACCAATTGGAAAGCCAATTGAACAGTCTGCAGCAGCTTTTCTGGTGGAGCAAGCAAACCTTTACCCTGGAAAAGTCACTGTGGTAGCATTAGGCCCACTTACAAATATTGCACTGGCTATACAACTAGATCCTGCATTTGCAAAGAACATTGGGCAGATTGTTCTTCTTGGTGGCGCTTTTGCAGTCAATGGGAATGTAAATCCAGCAGCAGAGGCCAATATATTTGGAGATCCAGATGCTGCAGATATAGTATTCACAAGTGGAGCAGATGTTTTGGCCGTGGGCCTAAATGTTACCCATCAAGTTGTCTTGACAGATGCTGATCGGGACAAGTTGACCAAGTCAAATGGAAAATTTGCTCAGTACCTGTGCAAAATTTTAGATGTGTACTTCTCTTACCATCATGATGCCTATAGCACGAAAGGAGTTTACCTTCATGATCCTACAGCCCTTCTGGCAGCTGTTAATCCTTCACTTCTAACTTACACAGAGGGTGTTGTTAGAGTTCAGACAAGTGGCATCACAAGAGGGCTCACAACTTTGTATAACAAACAGAAAAGGTTCGGTGAAGTCACAGAATGGTGTGATAAACCCACGGCGAAGGTAGCAGTTACTGTTGATGCTCCCACAGTGGTCAACTTGGTCATGGAACGGCTGATGGACTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006148 GO:0006152 GO:0006725 GO:0006807 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0008194 GO:0008477 GO:0009056 GO:0009116 GO:0009119 GO:0009164 GO:0009987 GO:0010150 GO:0016740 GO:0016757 GO:0016758 GO:0016787 GO:0016798 GO:0016799 GO:0019439 GO:0032501 GO:0032502 GO:0034641 GO:0034655 GO:0034656 GO:0035251 GO:0042278 GO:0042454 GO:0044237 GO:0044238 GO:0044248 GO:0044270 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046102 GO:0046128 GO:0046130 GO:0046483 GO:0046527 GO:0046700 GO:0047724 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0055086 GO:0071704 GO:0072521 GO:0072523 GO:0090693 GO:0099402 GO:1901135 GO:1901136 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575 GO:1901657 GO:1901658

KEGG Pathways

Metabolic & Signaling

ko00240 ko00760 map00240 map00760

Pfam Domains

Protein Families

IU_nuc_hydro

Protein Analysis

322

Amino Acids

34.36

Weight (kDa)

5.22

Isoelectric Point (pI)

16.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IU_nuc_hydro	PF01156	9 - 311	2.4e-91	Inosine-uridine preferring nucleoside hydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010784)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05620 AT1G05620
fragaria_vesca	FvH4_1g00210
malus_domestica	MD00G1087000.v1.1 MD15G1142900.v1.1
prunus_persica	Prupe.7G270100_v2.0.a1 Prupe.7G270100_v2.0.a1
pyrus_communis	pycom15g12900 pycom290g00180
rosa_chinensis	RchiOBHm_Chr2g0084501
rosa_multiflora	Rmu_co8418457.1_g000001 Rmu_sc0009647.1_g000005
rosa_roxburghii	Rroxscaffold_2G00156010
rosa_rugosa	Rorug01G0454600 Rorug01G0454600
rosa_samantha	Rh2AG002600 Rh2BG002200 Rh2CG002700 Rh2DG002700
rosa_wichuraiana	Rw2G000230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	305
AclWI	GGATC	6 cut(s)	35, 204, 217, 422, 524, 734
AcoI	YGGCCR	3 cut(s)	63, 144, 576
AcsI	RAATTY	2 cut(s)	653, 675
AcuI	CTGAAG	1 cut(s)	225
AfaI	GTAC	4 cut(s)	235, 268, 665, 689
AfiI	CCNNNNNNNGG	1 cut(s)	305
AgsI	TTSAA	2 cut(s)	82, 320
AjnI	CCWGG	2 cut(s)	43, 364
AloI	GAACNNNNNNTCC	2 cut(s)	178, 210
AluBI	AGCT	2 cut(s)	335, 761
AluI	AGCT	2 cut(s)	335, 761
AlwI	GGATC	6 cut(s)	35, 204, 217, 422, 524, 734
AlwNI	CAGNNNCTG	4 cut(s)	539, 620, 667, 914
AoxI	GGCC	6 cut(s)	63, 144, 391, 513, 576, 583
ApeKI	GCWGC	5 cut(s)	329, 332, 506, 539, 758
ApoI	RAATTY	2 cut(s)	653, 675
Asp700I	GAANNNNTTC	1 cut(s)	860
AspLEI	GCGC	1 cut(s)	476
AspS9I	GGNCC	2 cut(s)	392, 583
AsuHPI	GGTGA	1 cut(s)	878
BalI	TGGCCA	2 cut(s)	65, 146
BamHI	GGATCC	1 cut(s)	209
BanII	GRGCYC	1 cut(s)	834
BauI	CACGAG	1 cut(s)	148
BbvI	GCAGC	5 cut(s)	341, 344, 518, 526, 770
BccI	CCATC	4 cut(s)	266, 606, 708, 952
BceAI	ACGGC	2 cut(s)	563, 912
BcgI	CGANNNNNNTGC	2 cut(s)	66, 100
BciT130I	CCWGG	2 cut(s)	45, 366
BfaI	CTAG	1 cut(s)	425
BfmI	CTRYAG	4 cut(s)	327, 540, 712, 744
BfoI	RGCGCY	1 cut(s)	477
BglI	GCCNNNNNGGC	1 cut(s)	755
BisI	GCNGC	5 cut(s)	330, 333, 507, 540, 759
BlsI	GCNGC	5 cut(s)	331, 334, 508, 541, 760
Bme1390I	CCNGG	2 cut(s)	45, 366
BmgT120I	GGNCC	2 cut(s)	392, 583
BmiI	GGNNCC	1 cut(s)	211
BmrFI	CCNGG	2 cut(s)	45, 366
BmsI	GCATC	6 cut(s)	46, 526, 607, 697, 828, 910
BpuEI	CTTGAG	1 cut(s)	213
Bsa29I	ATCGAT	1 cut(s)	51
BsaBI	GATNNNNATC	2 cut(s)	29, 621
BsaJI	CCNNGG	5 cut(s)	60, 198, 364, 579, 894
BsaXI	ACNNNNNCTCC	2 cut(s)	555, 585
Bsc4I	CCNNNNNNNGG	1 cut(s)	305
Bse1I	ACTGG	1 cut(s)	417
Bse8I	GATNNNNATC	2 cut(s)	29, 621
BseBI	CCWGG	2 cut(s)	45, 366
BseCI	ATCGAT	1 cut(s)	51
BseDI	CCNNGG	5 cut(s)	60, 198, 364, 579, 894
BseGI	GGATG	1 cut(s)	277
BseJI	GATNNNNATC	2 cut(s)	29, 621
BseLI	CCNNNNNNNGG	1 cut(s)	305
BseMII	CTCAG	1 cut(s)	674
BseNI	ACTGG	1 cut(s)	417
BseXI	GCAGC	5 cut(s)	341, 344, 518, 526, 770
BshFI	GGCC	6 cut(s)	65, 146, 393, 515, 578, 585
BshVI	ATCGAT	1 cut(s)	51
BslFI	GGGAC	1 cut(s)	641
BslI	CCNNNNNNNGG	1 cut(s)	305
BsmFI	GGGAC	1 cut(s)	641
BsnI	GGCC	6 cut(s)	65, 146, 393, 515, 578, 585
Bsp1286I	GDGCHC	1 cut(s)	834
Bsp143I	GATC	7 cut(s)	24, 40, 209, 427, 529, 622, 739
Bsp19I	CCATGG	1 cut(s)	60
BspANI	GGCC	6 cut(s)	65, 146, 393, 515, 578, 585
BspCNI	CTCAG	1 cut(s)	673
BspDI	ATCGAT	1 cut(s)	51
BspHI	TCATGA	2 cut(s)	703, 736
BspLI	GGNNCC	1 cut(s)	211
BspMAI	CTGCAG	2 cut(s)	331, 544
BspPI	GGATC	6 cut(s)	35, 204, 217, 422, 524, 734
BsrI	ACTGG	1 cut(s)	417
BssECI	CCNNGG	5 cut(s)	60, 198, 364, 579, 894
BssMI	GATC	7 cut(s)	24, 40, 209, 427, 529, 622, 739
BssSI	CACGAG	1 cut(s)	148
BssT1I	CCWWGG	1 cut(s)	60
Bst2BI	CACGAG	1 cut(s)	148
Bst2UI	CCWGG	2 cut(s)	45, 366
Bst4CI	ACNGT	4 cut(s)	324, 379, 916, 931
BstC8I	GCNNGC	1 cut(s)	351
BstDEI	CTNAG	1 cut(s)	660
BstDSI	CCRYGG	4 cut(s)	60, 198, 579, 894
BstF5I	GGATG	1 cut(s)	277
BstH2I	RGCGCY	1 cut(s)	477
BstHHI	GCGC	1 cut(s)	476
BstKTI	GATC	7 cut(s)	27, 43, 212, 430, 532, 625, 742
BstMBI	GATC	7 cut(s)	24, 40, 209, 427, 529, 622, 739
BstMWI	GCNNNNNNNGC	3 cut(s)	512, 755, 905
BstNI	CCWGG	2 cut(s)	45, 366
BstSCI	CCNGG	2 cut(s)	43, 364
BstSFI	CTRYAG	4 cut(s)	327, 540, 712, 744
BstV1I	GCAGC	5 cut(s)	341, 344, 518, 526, 770
BstX2I	RGATCY	3 cut(s)	209, 427, 529
BstXI	CCANNNNNNTGG	1 cut(s)	73
BstYI	RGATCY	3 cut(s)	209, 427, 529
Bsu15I	ATCGAT	1 cut(s)	51
BsuRI	GGCC	6 cut(s)	65, 146, 393, 515, 578, 585
BsuTUI	ATCGAT	1 cut(s)	51
BtgI	CCRYGG	4 cut(s)	60, 198, 579, 894
BtsCI	GGATG	1 cut(s)	277
BtsI	GCAGTG	1 cut(s)	12
BtsIMutI	CAGTG	4 cut(s)	12, 375, 410, 936
Cac8I	GCNNGC	1 cut(s)	351
CaiI	CAGNNNCTG	4 cut(s)	539, 620, 667, 914
CciI	TCATGA	2 cut(s)	703, 736
CfoI	GCGC	1 cut(s)	476
Cfr13I	GGNCC	2 cut(s)	392, 583
ClaI	ATCGAT	1 cut(s)	51
Csp6I	GTAC	4 cut(s)	234, 267, 664, 688
CviAII	CATG	6 cut(s)	61, 215, 263, 704, 737, 946
CviQI	GTAC	4 cut(s)	234, 267, 664, 688
DdeI	CTNAG	1 cut(s)	660
DpnI	GATC	7 cut(s)	26, 42, 211, 429, 531, 624, 741
DpnII	GATC	7 cut(s)	24, 40, 209, 427, 529, 622, 739
EaeI	YGGCCR	3 cut(s)	63, 144, 576
Eco130I	CCWWGG	1 cut(s)	60
Eco24I	GRGCYC	1 cut(s)	834
Eco57I	CTGAAG	1 cut(s)	225
EcoRII	CCWGG	2 cut(s)	43, 364
EcoT14I	CCWWGG	1 cut(s)	60
EcoT38I	GRGCYC	1 cut(s)	834
ErhI	CCWWGG	1 cut(s)	60
FaeI	CATG	6 cut(s)	64, 218, 266, 707, 740, 949
FalI	AAGNNNNNCTT	2 cut(s)	342, 374
FaqI	GGGAC	1 cut(s)	641
FatI	CATG	6 cut(s)	60, 214, 262, 703, 736, 945
Fnu4HI	GCNGC	5 cut(s)	330, 333, 507, 540, 759
FokI	GGATG	1 cut(s)	284
FriOI	GRGCYC	1 cut(s)	834
Fsp4HI	GCNGC	5 cut(s)	330, 333, 507, 540, 759
FspBI	CTAG	1 cut(s)	425
GlaI	GCGC	1 cut(s)	475
GluI	GCNGC	5 cut(s)	330, 333, 507, 540, 759
HaeII	RGCGCY	1 cut(s)	477
HaeIII	GGCC	6 cut(s)	65, 146, 393, 515, 578, 585
HhaI	GCGC	1 cut(s)	476
Hin1II	CATG	6 cut(s)	64, 218, 266, 707, 740, 949
Hin6I	GCGC	1 cut(s)	474
HinP1I	GCGC	1 cut(s)	474
HincII	GTYRAC	2 cut(s)	636, 937
HindII	GTYRAC	2 cut(s)	636, 937
HinfI	GANTC	1 cut(s)	962
HphI	GGTGA	1 cut(s)	878
Hpy166II	GTNNAC	4 cut(s)	636, 688, 730, 937
Hpy188I	TCNGA	1 cut(s)	810
Hpy188III	TCNNGA	6 cut(s)	533, 610, 626, 704, 737, 966
Hpy8I	GTNNAC	4 cut(s)	636, 688, 730, 937
HpyAV	CCTTC	5 cut(s)	200, 743, 761, 780, 895
HpyCH4III	ACNGT	4 cut(s)	324, 379, 916, 931
HpyCH4V	TGCA	9 cut(s)	163, 179, 329, 410, 434, 440, 482, 542, 672
HpyF10VI	GCNNNNNNNGC	3 cut(s)	512, 755, 905
HpyF3I	CTNAG	1 cut(s)	660
Hsp92II	CATG	6 cut(s)	64, 218, 266, 707, 740, 949
HspAI	GCGC	1 cut(s)	474
Kzo9I	GATC	7 cut(s)	24, 40, 209, 427, 529, 622, 739
LmnI	GCTCC	3 cut(s)	346, 563, 928
Lsp1109I	GCAGC	5 cut(s)	341, 344, 518, 526, 770
LweI	GCATC	6 cut(s)	46, 526, 607, 697, 828, 910
MaeI	CTAG	1 cut(s)	425
MaeIII	GTNAC	5 cut(s)	217, 373, 592, 871, 910
MalI	GATC	7 cut(s)	26, 42, 211, 429, 531, 624, 741
MboI	GATC	7 cut(s)	24, 40, 209, 427, 529, 622, 739
MboII	GAAGA	2 cut(s)	34, 455
MfeI	CAATTG	2 cut(s)	303, 315
MflI	RGATCY	3 cut(s)	209, 427, 529
MhlI	GDGCHC	1 cut(s)	834
MlsI	TGGCCA	2 cut(s)	65, 146
MluCI	AATT	4 cut(s)	303, 315, 653, 675
MluNI	TGGCCA	2 cut(s)	65, 146
MlyI	GAGTC	1 cut(s)	956
MmeI	TCCRAC	1 cut(s)	150
MnlI	CCTC	5 cut(s)	85, 306, 505, 784, 821
Mox20I	TGGCCA	2 cut(s)	65, 146
MroXI	GAANNNNTTC	1 cut(s)	860
MscI	TGGCCA	2 cut(s)	65, 146
MseI	TTAA	1 cut(s)	765
MslI	CAYNNNNRTG	2 cut(s)	71, 705
Msp20I	TGGCCA	2 cut(s)	65, 146
MspA1I	CMGCKG	1 cut(s)	761
MspR9I	CCNGG	2 cut(s)	45, 366
MunI	CAATTG	2 cut(s)	303, 315
MvaI	CCWGG	2 cut(s)	45, 366
MwoI	GCNNNNNNNGC	3 cut(s)	512, 755, 905
NcoI	CCATGG	1 cut(s)	60
NdeII	GATC	7 cut(s)	24, 40, 209, 427, 529, 622, 739
NlaIII	CATG	6 cut(s)	64, 218, 266, 707, 740, 949
NlaIV	GGNNCC	1 cut(s)	211
NmuCI	GTSAC	3 cut(s)	217, 373, 871
PagI	TCATGA	2 cut(s)	703, 736
PdmI	GAANNNNTTC	1 cut(s)	860
PflFI	GACNNNGTC	1 cut(s)	640
PflMI	CCANNNNNTGG	1 cut(s)	305
PkrI	GCNGC	5 cut(s)	331, 334, 508, 541, 760
PleI	GAGTC	1 cut(s)	956
PpsI	GAGTC	1 cut(s)	956
Psp6I	CCWGG	2 cut(s)	43, 364
PspGI	CCWGG	2 cut(s)	43, 364
PspN4I	GGNNCC	1 cut(s)	211
PspPI	GGNCC	2 cut(s)	392, 583
PstI	CTGCAG	2 cut(s)	331, 544
PstNI	CAGNNNCTG	4 cut(s)	539, 620, 667, 914
PsuI	RGATCY	3 cut(s)	209, 427, 529
PsyI	GACNNNGTC	1 cut(s)	640
PvuII	CAGCTG	1 cut(s)	761
RsaI	GTAC	4 cut(s)	235, 268, 665, 689
RsaNI	GTAC	4 cut(s)	234, 267, 664, 688
RseI	CAYNNNNRTG	2 cut(s)	71, 705
SaqAI	TTAA	1 cut(s)	765
SatI	GCNGC	5 cut(s)	330, 333, 507, 540, 759
Sau3AI	GATC	7 cut(s)	24, 40, 209, 427, 529, 622, 739
Sau96I	GGNCC	2 cut(s)	392, 583
SchI	GAGTC	1 cut(s)	956
ScrFI	CCNGG	2 cut(s)	45, 366
SduI	GDGCHC	1 cut(s)	834
SetI	ASST	9 cut(s)	96, 235, 337, 360, 669, 735, 763, 863, 906
SfaNI	GCATC	6 cut(s)	46, 526, 607, 697, 828, 910
SfcI	CTRYAG	4 cut(s)	327, 540, 712, 744
SmiMI	CAYNNNNRTG	2 cut(s)	71, 705
SmlI	CTYRAG	1 cut(s)	228
SmoI	CTYRAG	1 cut(s)	228
Sse9I	AATT	4 cut(s)	303, 315, 653, 675
SspI	AATATT	1 cut(s)	406
SspMI	CTAG	1 cut(s)	425
StyD4I	CCNGG	2 cut(s)	43, 364
StyI	CCWWGG	1 cut(s)	60
TaaI	ACNGT	4 cut(s)	324, 379, 916, 931
TaqI	TCGA	2 cut(s)	33, 51
TasI	AATT	4 cut(s)	303, 315, 653, 675
TatI	WGTACW	1 cut(s)	687
Tru1I	TTAA	1 cut(s)	765
Tru9I	TTAA	1 cut(s)	765
TscAI	CASTG	4 cut(s)	12, 382, 417, 936
TseFI	GTSAC	3 cut(s)	217, 373, 871
TseI	GCWGC	5 cut(s)	329, 332, 506, 539, 758
Tsp45I	GTSAC	3 cut(s)	217, 373, 871
TspDTI	ATGAA	3 cut(s)	27, 251, 725
TspGWI	ACGGA	1 cut(s)	284
TspRI	CASTG	4 cut(s)	12, 382, 417, 936
Tth111I	GACNNNGTC	1 cut(s)	640
Van91I	CCANNNNNTGG	1 cut(s)	305
XapI	RAATTY	2 cut(s)	653, 675
XmnI	GAANNNNTTC	1 cut(s)	860
XspI	CTAG	1 cut(s)	425

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.